Wall clock time and date at job start Tue Mar 31 2020 00:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55156 * 111.00784 * 86.45040 * 10 9 7 13 13 C 1.54325 * 102.94629 * 153.57711 * 12 10 9 14 14 N 1.47018 * 107.26791 * 337.80770 * 13 12 10 15 15 C 1.34779 * 125.64980 * 178.92265 * 14 13 12 16 16 O 1.21281 * 120.00114 * 180.02562 * 15 14 13 17 17 C 1.50696 * 119.99848 * 0.02562 * 15 14 13 18 18 H 1.08998 * 115.57566 * 34.15143 * 17 15 14 19 19 C 1.52306 * 117.54022 * 180.02562 * 17 15 14 20 20 H 1.08996 * 115.91468 * 1.58882 * 19 17 15 21 21 C 1.52075 * 119.83978 * 217.19681 * 19 17 15 22 22 C 1.52873 * 110.51427 * 310.44921 * 21 19 17 23 23 C 1.53302 * 108.58987 * 305.10929 * 22 21 19 24 24 C 1.52875 * 108.58206 * 74.44283 * 23 22 21 25 25 C 1.52069 * 60.64002 * 107.37911 * 19 17 15 26 26 H 1.09000 * 117.25634 * 252.87034 * 25 19 17 27 27 C 1.47428 * 108.70653 * 358.94229 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09006 * 110.71784 * 271.94057 * 12 10 9 31 31 H 1.08998 * 110.71749 * 35.03386 * 12 10 9 32 32 H 1.09001 * 109.88082 * 97.22397 * 13 12 10 33 33 H 1.08997 * 109.88174 * 218.23304 * 13 12 10 34 34 H 1.08997 * 109.26613 * 70.71670 * 21 19 17 35 35 H 1.08997 * 109.26850 * 190.18032 * 21 19 17 36 36 H 1.08994 * 109.61785 * 64.83882 * 22 21 19 37 37 H 1.08995 * 109.61603 * 185.20136 * 22 21 19 38 38 H 1.08993 * 109.61930 * 194.17567 * 23 22 21 39 39 H 1.09005 * 109.61644 * 314.71887 * 23 22 21 40 40 H 1.09005 * 109.35575 * 65.69037 * 24 23 22 41 41 H 1.09003 * 109.35823 * 185.26780 * 24 23 22 42 42 H 1.09009 * 110.36455 * 265.29447 * 27 14 13 43 43 H 1.09000 * 110.36736 * 142.97060 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 2.4126 -4.0943 1.4441 13 6 2.5162 -5.6295 1.3252 14 7 1.7446 -6.0284 0.1391 15 6 1.6048 -7.2878 -0.3201 16 8 0.9420 -7.5012 -1.3131 17 6 2.2721 -8.4308 0.4004 18 1 2.3365 -8.3307 1.4838 19 6 2.0774 -9.8307 -0.1673 20 1 1.4840 -9.8967 -1.0791 21 6 1.9260 -11.0149 0.7747 22 6 3.0362 -11.0088 1.8257 23 6 4.3895 -10.9686 1.1067 24 6 4.6079 -9.5585 0.5580 25 6 3.4269 -9.1461 -0.3178 26 1 3.6956 -8.7852 -1.3107 27 6 1.1493 -4.8226 -0.4652 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 3.3661 -3.6662 1.7536 31 1 1.6210 -3.8111 2.1378 32 1 3.5592 -5.9224 1.2046 33 1 2.1001 -6.0993 2.2163 34 1 0.9585 -10.9565 1.2732 35 1 1.9790 -11.9401 0.2009 36 1 2.9333 -10.1296 2.4615 37 1 2.9688 -11.9105 2.4343 38 1 5.1850 -11.2149 1.8100 39 1 4.3889 -11.6850 0.2852 40 1 4.7039 -8.8586 1.3882 41 1 5.5220 -9.5393 -0.0355 42 1 0.1320 -4.6784 -0.1011 43 1 1.1566 -4.9000 -1.5525 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018672720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:44 Heat of formation + Delta-G solvation = -13.372026 kcal Electronic energy + Delta-G solvation = -21788.460226 eV Core-core repulsion = 18640.669213 eV Total energy + Delta-G solvation = -3147.791013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60777 -38.95582 -37.18100 -34.42844 -33.32515 -31.54804 -31.06383 -29.49607 -27.97019 -25.54951 -23.63564 -23.01333 -22.80928 -21.75404 -20.25844 -19.31039 -18.30950 -17.50726 -17.44338 -15.95745 -15.84000 -15.18895 -14.66903 -14.50487 -14.22705 -14.19327 -13.71717 -13.56876 -13.32058 -12.84312 -12.76508 -12.58256 -12.35173 -12.14127 -11.94825 -11.68465 -11.42784 -11.16308 -11.04831 -10.71566 -10.68314 -10.57509 -10.28502 -10.14893 -10.05173 -9.96645 -9.61788 -9.25198 -8.98141 -8.46135 -7.14010 -6.17048 -3.19020 2.53189 3.04270 3.48759 3.53392 3.64129 3.67618 4.30446 4.44934 4.46368 4.61526 4.69225 4.72122 4.82849 4.97685 5.00606 5.05964 5.21906 5.23947 5.30003 5.32158 5.41082 5.49048 5.57406 5.62787 5.63748 5.68426 5.73550 5.81267 5.89576 5.94159 5.95369 5.97832 6.03429 6.12991 6.15542 6.28645 6.48546 6.52903 6.81342 7.68886 7.74201 8.29148 8.68315 9.12668 9.99234 10.12764 11.30986 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039454 B = 0.003225 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.519776 B = 8679.851635 C = 9006.431168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.336 4.336 8 H 0.067 0.933 9 N -0.727 5.727 10 C 0.177 3.823 11 H 0.064 0.936 12 C -0.154 4.154 13 C 0.104 3.896 14 N -0.609 5.609 15 C 0.554 3.446 16 O -0.548 6.548 17 C -0.184 4.184 18 H 0.121 0.879 19 C -0.107 4.107 20 H 0.112 0.888 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.091 4.091 25 C -0.117 4.117 26 H 0.106 0.894 27 C 0.099 3.901 28 H 0.256 0.744 29 H 0.369 0.631 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.795 -22.216 4.658 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.240 4.240 3 Si 0.914 3.086 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.466 4.466 8 H 0.085 0.915 9 N -0.369 5.369 10 C 0.066 3.934 11 H 0.082 0.918 12 C -0.196 4.196 13 C -0.019 4.019 14 N -0.342 5.342 15 C 0.343 3.657 16 O -0.427 6.427 17 C -0.205 4.205 18 H 0.139 0.861 19 C -0.125 4.125 20 H 0.130 0.870 21 C -0.126 4.126 22 C -0.162 4.162 23 C -0.156 4.156 24 C -0.129 4.129 25 C -0.136 4.136 26 H 0.124 0.876 27 C -0.025 4.025 28 H 0.067 0.933 29 H 0.203 0.797 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.494 -20.677 4.078 22.722 hybrid contribution -0.130 -1.510 0.198 1.529 sum 8.364 -22.188 4.275 24.094 Atomic orbital electron populations 1.70855 1.06087 1.28579 1.53045 1.25825 0.97025 1.01089 1.00059 0.83183 0.73898 0.75205 0.76272 1.22233 1.22072 1.21322 1.20040 0.92080 0.85427 1.49095 0.91507 1.42268 1.04852 1.00347 1.89387 1.21223 0.94110 0.85117 0.92998 0.91814 1.23390 1.02861 0.91448 1.01854 1.22066 0.95365 0.97210 0.87285 1.48335 1.50898 1.05994 1.29002 1.19330 0.80425 0.82001 0.83923 1.90678 1.41579 1.83809 1.26613 1.22421 1.05461 0.92684 0.99893 0.86079 1.21893 0.98467 0.90904 1.01273 0.86955 1.20882 0.98995 0.96498 0.96220 1.21639 0.94819 1.02026 0.97701 1.21566 0.97127 0.96936 0.99979 1.21101 0.96263 0.96867 0.98642 1.22327 0.89397 1.01982 0.99853 0.87559 1.22523 0.97406 0.83776 0.98746 0.93253 0.79700 0.90640 0.90710 0.91766 0.92130 0.91296 0.91015 0.91812 0.91662 0.91791 0.91568 0.91318 0.91209 0.91592 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.79 13.70 55.49 0.76 -28.03 16 2 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 3 Si 1.08 25.55 29.92 -169.99 -5.09 20.46 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.34 -9.22 9.98 -15.06 -0.15 -9.37 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.73 -17.84 5.28 -51.36 -0.27 -18.11 16 10 C 0.18 3.50 3.69 -65.79 -0.24 3.26 16 11 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 12 C -0.15 -2.55 6.65 -24.90 -0.17 -2.72 16 13 C 0.10 1.41 6.28 -3.07 -0.02 1.39 16 14 N -0.61 -9.73 3.33 -170.52 -0.57 -10.29 16 15 C 0.55 8.90 7.64 -10.99 -0.08 8.82 16 16 O -0.55 -10.73 16.45 5.56 0.09 -10.64 16 17 C -0.18 -2.17 4.67 -91.79 -0.43 -2.59 16 18 H 0.12 1.26 6.85 -51.93 -0.36 0.90 16 19 C -0.11 -1.13 5.57 -91.92 -0.51 -1.64 16 20 H 0.11 1.39 7.55 -51.93 -0.39 1.00 16 21 C -0.09 -0.71 5.93 -27.27 -0.16 -0.88 16 22 C -0.12 -0.87 5.70 -26.64 -0.15 -1.02 16 23 C -0.12 -0.80 5.93 -26.64 -0.16 -0.96 16 24 C -0.09 -0.72 5.83 -26.94 -0.16 -0.87 16 25 C -0.12 -1.19 5.90 -90.90 -0.54 -1.72 16 26 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 27 C 0.10 1.80 6.53 -2.53 -0.02 1.79 16 28 H 0.26 7.72 6.77 -40.82 -0.28 7.44 16 29 H 0.37 9.39 6.54 -40.82 -0.27 9.12 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.71 8.06 -51.93 -0.42 0.30 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.47 7.11 -51.93 -0.37 0.10 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 40 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.24 8.00 -51.92 -0.42 0.82 16 43 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -32.12 340.04 -10.01 -42.12 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.18 Total: 7.18 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.88 Total: -7.82 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.08 Total: -56.43 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.09 Total: 20.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.12 -10.01 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018672720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.752 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds