Wall clock time and date at job start Tue Mar 31 2020 00:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55156 * 111.00784 * 86.45040 * 10 9 7 13 13 C 1.54325 * 102.94629 * 153.57711 * 12 10 9 14 14 N 1.47018 * 107.26791 * 337.80770 * 13 12 10 15 15 C 1.34779 * 125.64980 * 178.92265 * 14 13 12 16 16 O 1.21281 * 120.00114 * 180.02562 * 15 14 13 17 17 C 1.50696 * 119.99848 * 0.02562 * 15 14 13 18 18 H 1.08998 * 115.57566 * 34.15143 * 17 15 14 19 19 C 1.52306 * 117.54022 * 180.02562 * 17 15 14 20 20 H 1.08996 * 115.91468 * 1.58882 * 19 17 15 21 21 C 1.52075 * 119.83978 * 217.19681 * 19 17 15 22 22 C 1.52873 * 110.51427 * 310.44921 * 21 19 17 23 23 C 1.53302 * 108.58987 * 305.10929 * 22 21 19 24 24 C 1.52875 * 108.58206 * 74.44283 * 23 22 21 25 25 C 1.52069 * 60.64002 * 107.37911 * 19 17 15 26 26 H 1.09000 * 117.25634 * 252.87034 * 25 19 17 27 27 C 1.47428 * 108.70653 * 358.94229 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09006 * 110.71784 * 271.94057 * 12 10 9 31 31 H 1.08998 * 110.71749 * 35.03386 * 12 10 9 32 32 H 1.09001 * 109.88082 * 97.22397 * 13 12 10 33 33 H 1.08997 * 109.88174 * 218.23304 * 13 12 10 34 34 H 1.08997 * 109.26613 * 70.71670 * 21 19 17 35 35 H 1.08997 * 109.26850 * 190.18032 * 21 19 17 36 36 H 1.08994 * 109.61785 * 64.83882 * 22 21 19 37 37 H 1.08995 * 109.61603 * 185.20136 * 22 21 19 38 38 H 1.08993 * 109.61930 * 194.17567 * 23 22 21 39 39 H 1.09005 * 109.61644 * 314.71887 * 23 22 21 40 40 H 1.09005 * 109.35575 * 65.69037 * 24 23 22 41 41 H 1.09003 * 109.35823 * 185.26780 * 24 23 22 42 42 H 1.09009 * 110.36455 * 265.29447 * 27 14 13 43 43 H 1.09000 * 110.36736 * 142.97060 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 2.4126 -4.0943 1.4441 13 6 2.5162 -5.6295 1.3252 14 7 1.7446 -6.0284 0.1391 15 6 1.6048 -7.2878 -0.3201 16 8 0.9420 -7.5012 -1.3131 17 6 2.2721 -8.4308 0.4004 18 1 2.3365 -8.3307 1.4838 19 6 2.0774 -9.8307 -0.1673 20 1 1.4840 -9.8967 -1.0791 21 6 1.9260 -11.0149 0.7747 22 6 3.0362 -11.0088 1.8257 23 6 4.3895 -10.9686 1.1067 24 6 4.6079 -9.5585 0.5580 25 6 3.4269 -9.1461 -0.3178 26 1 3.6956 -8.7852 -1.3107 27 6 1.1493 -4.8226 -0.4652 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 3.3661 -3.6662 1.7536 31 1 1.6210 -3.8111 2.1378 32 1 3.5592 -5.9224 1.2046 33 1 2.1001 -6.0993 2.2163 34 1 0.9585 -10.9565 1.2732 35 1 1.9790 -11.9401 0.2009 36 1 2.9333 -10.1296 2.4615 37 1 2.9688 -11.9105 2.4343 38 1 5.1850 -11.2149 1.8100 39 1 4.3889 -11.6850 0.2852 40 1 4.7039 -8.8586 1.3882 41 1 5.5220 -9.5393 -0.0355 42 1 0.1320 -4.6784 -0.1011 43 1 1.1566 -4.9000 -1.5525 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018672720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:44 Heat of formation + Delta-G solvation = -32.462807 kcal Electronic energy + Delta-G solvation = -21789.288064 eV Core-core repulsion = 18640.669213 eV Total energy + Delta-G solvation = -3148.618851 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67159 -40.06365 -38.56609 -36.29488 -34.08425 -33.29684 -31.68592 -31.00920 -29.54917 -26.64030 -25.40307 -24.33470 -23.43661 -22.74794 -21.81751 -20.35007 -19.51743 -19.13232 -18.59461 -17.36667 -16.97983 -16.77204 -15.87431 -15.74672 -15.51103 -14.90021 -14.85646 -14.68895 -14.65750 -14.44696 -13.94900 -13.62686 -13.30588 -13.24684 -13.10149 -12.76924 -12.70993 -12.53144 -12.42762 -12.02571 -11.87427 -11.80355 -11.75025 -11.33932 -11.22420 -11.09428 -10.96366 -10.75535 -10.63220 -9.79287 -9.19344 -8.41651 -5.37965 1.33804 1.59296 1.70107 1.78123 1.84152 2.70841 2.73693 3.28514 3.40068 3.54961 3.66801 3.70767 3.72890 3.88046 4.00994 4.01346 4.09569 4.17520 4.22067 4.33318 4.35293 4.38870 4.56831 4.62765 4.67758 4.72470 4.83826 4.86263 4.89550 5.04915 5.09928 5.12878 5.15223 5.25422 5.30797 5.32832 5.34992 5.43960 5.54566 5.58406 6.42264 6.46211 7.00154 7.03324 7.91911 8.03958 9.09874 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039454 B = 0.003225 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.519776 B = 8679.851635 C = 9006.431168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.103 4.103 3 Si 1.131 2.869 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.296 1.296 7 C -0.330 4.330 8 H 0.073 0.927 9 N -0.742 5.742 10 C 0.171 3.829 11 H 0.058 0.942 12 C -0.143 4.143 13 C 0.111 3.889 14 N -0.610 5.610 15 C 0.548 3.452 16 O -0.594 6.594 17 C -0.187 4.187 18 H 0.145 0.855 19 C -0.107 4.107 20 H 0.086 0.914 21 C -0.086 4.086 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.089 4.089 25 C -0.105 4.105 26 H 0.090 0.910 27 C 0.107 3.893 28 H 0.244 0.756 29 H 0.360 0.640 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 -23.840 6.519 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.294 4.294 3 Si 0.956 3.044 4 H -0.209 1.209 5 H -0.197 1.197 6 H -0.223 1.223 7 C -0.461 4.461 8 H 0.091 0.909 9 N -0.383 5.383 10 C 0.061 3.939 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.011 4.011 14 N -0.342 5.342 15 C 0.339 3.661 16 O -0.475 6.475 17 C -0.207 4.207 18 H 0.163 0.837 19 C -0.125 4.125 20 H 0.104 0.896 21 C -0.123 4.123 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.126 4.126 25 C -0.124 4.124 26 H 0.108 0.892 27 C -0.017 4.017 28 H 0.054 0.946 29 H 0.193 0.807 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.048 -22.361 5.968 25.645 hybrid contribution -0.911 -1.095 -0.456 1.495 sum 10.137 -23.455 5.512 26.140 Atomic orbital electron populations 1.70968 1.07328 1.27951 1.56106 1.27253 0.97056 1.04789 1.00346 0.82577 0.73524 0.71348 0.76953 1.20858 1.19674 1.22285 1.20378 0.92487 0.86441 1.46817 0.90949 1.42430 1.04639 1.01430 1.89835 1.21363 0.93542 0.83704 0.95300 0.92394 1.23186 1.02809 0.93819 0.98541 1.22183 0.96894 0.94811 0.87212 1.48421 1.50910 1.05335 1.29555 1.20155 0.79793 0.82657 0.83509 1.90655 1.43611 1.84457 1.28802 1.22422 1.06474 0.91306 1.00539 0.83743 1.21942 0.98468 0.91277 1.00860 0.89566 1.20907 0.99727 0.95469 0.96196 1.21650 0.94198 1.02827 0.97286 1.21570 0.97512 0.96036 1.00267 1.21150 0.95096 0.97838 0.98529 1.22418 0.89954 1.00579 0.99414 0.89156 1.22206 0.96910 0.84788 0.97805 0.94560 0.80734 0.89575 0.91944 0.88885 0.89240 0.91288 0.90101 0.91736 0.90189 0.90203 0.91637 0.90353 0.90414 0.92585 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.10 13.70 21.65 0.30 -60.81 16 2 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 3 Si 1.13 51.27 29.92 68.60 2.05 53.33 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.33 -18.18 9.98 84.03 0.84 -17.34 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -37.11 5.28 -316.39 -1.67 -38.78 16 10 C 0.17 6.74 3.69 46.38 0.17 6.92 16 11 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 12 C -0.14 -4.49 6.65 31.78 0.21 -4.27 16 13 C 0.11 2.67 6.28 86.73 0.54 3.22 16 14 N -0.61 -18.94 3.33 -811.79 -2.70 -21.64 16 15 C 0.55 17.39 7.64 87.66 0.67 18.05 16 16 O -0.59 -24.00 16.45 -3.03 -0.05 -24.04 16 17 C -0.19 -4.06 4.67 -11.55 -0.05 -4.11 16 18 H 0.14 2.46 6.85 -2.39 -0.02 2.45 16 19 C -0.11 -2.14 5.57 -11.64 -0.06 -2.20 16 20 H 0.09 2.19 7.55 -2.39 -0.02 2.17 16 21 C -0.09 -1.19 5.93 30.25 0.18 -1.01 16 22 C -0.12 -1.26 5.70 30.65 0.17 -1.09 16 23 C -0.12 -1.14 5.93 30.65 0.18 -0.96 16 24 C -0.09 -1.09 5.83 30.46 0.18 -0.91 16 25 C -0.10 -1.94 5.90 -10.98 -0.06 -2.01 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 C 0.11 4.01 6.53 86.85 0.57 4.58 16 28 H 0.24 15.28 6.77 -92.71 -0.63 14.65 16 29 H 0.36 19.07 6.54 -92.71 -0.61 18.47 16 30 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.73 8.06 -2.39 -0.02 1.71 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.68 7.11 -2.39 -0.02 0.66 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.67 8.04 -2.38 -0.02 0.65 16 40 H 0.08 0.86 8.06 -2.38 -0.02 0.84 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 2.19 8.00 -2.38 -0.02 2.18 16 43 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 Total: -1.00 -71.42 340.04 2.45 -68.97 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.52 Total: 29.60 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 4.00 Total: -6.61 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -4.07 Total: -121.23 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.33 kcal Total: -71.42 2.45 -68.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018672720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.503 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds