Wall clock time and date at job start Tue Mar 31 2020 00:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00045 * 2 1 4 4 H 1.48501 * 109.46941 * 240.00166 * 3 2 1 5 5 H 1.48502 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47528 * 119.99723 * 3 2 1 7 7 C 1.38808 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00374 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00285 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.64316 * 323.31581 * 10 9 7 12 12 C 1.55162 * 110.71805 * 86.45194 * 10 9 7 13 13 C 1.54912 * 101.58049 * 153.86734 * 12 10 9 14 14 N 1.47423 * 104.83235 * 322.99450 * 13 12 10 15 15 C 1.34779 * 125.64629 * 204.09446 * 14 13 12 16 16 O 1.21282 * 119.99927 * 180.02562 * 15 14 13 17 17 C 1.50699 * 120.00033 * 0.02562 * 15 14 13 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.35643 * 55.00184 * 18 17 15 20 20 C 1.50060 * 109.35643 * 295.27750 * 18 17 15 21 21 C 1.29262 * 124.21636 * 222.51345 * 20 18 17 22 22 C 1.50066 * 124.01814 * 0.72910 * 21 20 18 23 23 C 1.53021 * 110.14843 * 342.74153 * 22 21 20 24 24 C 1.53025 * 109.35375 * 174.72341 * 18 17 15 25 25 C 1.47023 * 108.70598 * 24.35364 * 14 13 12 26 26 H 0.97004 * 120.00149 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00018 * 359.97438 * 9 7 2 28 28 H 1.08995 * 111.00365 * 35.79837 * 12 10 9 29 29 H 1.08999 * 111.00462 * 271.94316 * 12 10 9 30 30 H 1.08999 * 110.36851 * 204.15442 * 13 12 10 31 31 H 1.09007 * 110.45979 * 81.87757 * 13 12 10 32 32 H 1.08993 * 109.47512 * 60.00410 * 17 15 14 33 33 H 1.09000 * 109.47247 * 300.00119 * 17 15 14 34 34 H 1.08003 * 117.96790 * 42.63872 * 20 18 17 35 35 H 1.07994 * 118.01872 * 180.57638 * 21 20 18 36 36 H 1.09004 * 109.36015 * 222.53434 * 22 21 20 37 37 H 1.08999 * 109.24833 * 102.87854 * 22 21 20 38 38 H 1.09005 * 109.64214 * 289.75167 * 23 22 21 39 39 H 1.09001 * 109.64493 * 169.12223 * 23 22 21 40 40 H 1.09002 * 109.64166 * 289.32644 * 24 18 17 41 41 H 1.08998 * 109.64521 * 49.95545 * 24 18 17 42 42 H 1.08998 * 109.87806 * 118.13091 * 25 14 13 43 43 H 1.08994 * 109.88400 * 239.30033 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9585 -3.5806 -0.6088 12 6 2.4102 -4.0873 1.4490 13 6 2.5143 -5.6257 1.2996 14 7 1.4564 -5.9838 0.3373 15 6 0.8633 -7.1897 0.2348 16 8 0.0008 -7.3725 -0.5980 17 6 1.2718 -8.3110 1.1551 18 6 0.4517 -9.5613 0.8308 19 1 0.5635 -9.8026 -0.2263 20 6 -0.9950 -9.2989 1.1308 21 6 -1.7798 -10.1411 1.7188 22 6 -1.3490 -11.4961 2.1986 23 6 -0.0310 -11.8968 1.5323 24 6 0.9581 -10.7330 1.6748 25 6 1.1600 -4.8095 -0.4962 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 1.6141 -3.8151 2.1420 29 1 3.3624 -3.6599 1.7630 30 1 2.3358 -6.1129 2.2582 31 1 3.4928 -5.9052 0.9091 32 1 1.0921 -8.0163 2.1889 33 1 2.3315 -8.5262 1.0175 34 1 -1.4088 -8.3460 0.8353 35 1 -2.8081 -9.8513 1.8766 36 1 -2.1170 -12.2286 1.9497 37 1 -1.2134 -11.4681 3.2797 38 1 -0.2027 -12.1044 0.4761 39 1 0.3727 -12.7829 2.0221 40 1 1.9413 -11.0422 1.3200 41 1 1.0207 -10.4314 2.7204 42 1 1.3812 -5.0308 -1.5403 43 1 0.1113 -4.5331 -0.3877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019027753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:25 Heat of formation + Delta-G solvation = -21.858276 kcal Electronic energy + Delta-G solvation = -21520.305665 eV Core-core repulsion = 18372.146661 eV Total energy + Delta-G solvation = -3148.159004 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.09406 -38.59436 -37.12510 -34.13071 -32.80558 -31.47064 -31.12266 -29.53195 -28.40763 -26.74770 -23.80358 -22.90321 -22.42279 -21.95442 -20.04114 -18.94191 -18.06405 -17.38669 -16.92268 -16.06337 -15.88526 -15.34666 -14.75899 -14.39662 -14.26234 -13.64934 -13.51708 -13.32806 -13.06851 -12.80813 -12.74468 -12.57301 -12.23268 -12.15065 -11.89631 -11.65799 -11.52688 -11.17716 -11.03403 -10.84873 -10.72689 -10.67435 -10.35692 -10.23379 -10.11757 -9.77335 -9.51763 -9.02962 -8.97616 -8.37828 -7.05877 -5.83172 -3.14042 2.31319 2.82090 3.18764 3.40361 3.45041 3.46189 4.46205 4.53380 4.56065 4.60191 4.77467 4.99928 5.04530 5.09808 5.20718 5.27461 5.34823 5.36130 5.42948 5.52062 5.53182 5.54903 5.58426 5.63174 5.72513 5.75527 5.77785 5.91212 5.96253 6.13590 6.17228 6.22706 6.25617 6.37439 6.57656 6.59807 6.69721 6.89767 6.95887 7.63192 7.76509 8.33765 8.37109 9.45474 9.99991 10.34640 11.38996 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043278 B = 0.002992 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.829444 B = 9354.644581 C = 9621.516961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.171 3.829 11 H 0.063 0.937 12 C -0.154 4.154 13 C 0.098 3.902 14 N -0.614 5.614 15 C 0.523 3.477 16 O -0.544 6.544 17 C -0.128 4.128 18 C -0.043 4.043 19 H 0.087 0.913 20 C -0.132 4.132 21 C -0.173 4.173 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.116 4.116 25 C 0.101 3.899 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -22.076 5.670 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.025 4.025 14 N -0.348 5.348 15 C 0.312 3.688 16 O -0.422 6.422 17 C -0.168 4.168 18 C -0.062 4.062 19 H 0.106 0.894 20 C -0.150 4.150 21 C -0.191 4.191 22 C -0.126 4.126 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.022 4.022 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.112 -22.061 5.195 22.877 hybrid contribution 0.115 1.124 0.089 1.134 sum 3.226 -20.937 5.283 21.833 Atomic orbital electron populations 1.69657 1.05176 1.26019 1.56928 1.24778 0.95526 0.97834 1.02532 0.86239 0.78515 0.83346 0.77876 1.21169 1.21656 1.21179 1.19162 0.91013 0.83822 1.43651 0.91015 1.42358 1.05799 0.99372 1.88159 1.21181 0.94100 0.85701 0.93047 0.91906 1.23558 1.02667 0.91651 1.01706 1.22397 0.90393 0.97636 0.92082 1.48551 1.38974 1.10950 1.36366 1.20312 0.81446 0.82349 0.84713 1.90690 1.31875 1.82030 1.37579 1.21676 1.01464 0.93581 1.00066 1.19846 0.92477 0.93061 1.00781 0.89447 1.22163 0.94974 0.99988 0.97854 1.21957 0.99470 0.96043 1.01673 1.20431 0.97108 0.95078 0.99981 1.21592 0.95342 0.97637 1.01150 1.21675 0.98527 0.94905 1.00227 1.22263 1.00895 0.84909 0.94168 0.93283 0.77956 0.90644 0.90569 0.91341 0.91669 0.88951 0.88891 0.87065 0.88210 0.91487 0.91262 0.91715 0.91788 0.91599 0.91570 0.91736 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.60 9.98 -15.06 -0.15 -6.75 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.49 5.25 -51.64 -0.27 -17.76 16 10 C 0.17 3.27 3.58 -66.09 -0.24 3.03 16 11 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 12 C -0.15 -2.48 6.77 -24.58 -0.17 -2.64 16 13 C 0.10 1.24 6.69 -2.53 -0.02 1.23 16 14 N -0.61 -9.39 3.33 -170.51 -0.57 -9.96 16 15 C 0.52 7.91 7.48 -10.99 -0.08 7.82 16 16 O -0.54 -10.11 14.60 5.56 0.08 -10.03 16 17 C -0.13 -1.37 4.14 -27.88 -0.12 -1.48 16 18 C -0.04 -0.47 2.12 -92.06 -0.19 -0.66 16 19 H 0.09 1.06 7.95 -51.93 -0.41 0.64 16 20 C -0.13 -1.63 8.39 -35.86 -0.30 -1.93 16 21 C -0.17 -1.86 9.80 -35.86 -0.35 -2.21 16 22 C -0.09 -0.75 6.11 -28.18 -0.17 -0.92 16 23 C -0.12 -0.95 6.01 -26.52 -0.16 -1.11 16 24 C -0.12 -0.95 5.30 -26.51 -0.14 -1.09 16 25 C 0.10 1.81 6.63 -3.06 -0.02 1.79 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.39 10.18 7.51 -40.82 -0.31 9.87 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.11 1.66 6.51 -52.48 -0.34 1.32 16 35 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -31.00 342.43 -9.39 -40.39 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.29 Total: 7.67 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.20 Total: -5.32 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.11 Total: -54.77 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.00 -9.39 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019027753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.534 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds