Wall clock time and date at job start Tue Mar 31 2020 00:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00045 * 2 1 4 4 H 1.48501 * 109.46941 * 240.00166 * 3 2 1 5 5 H 1.48502 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47528 * 119.99723 * 3 2 1 7 7 C 1.38808 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00374 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00285 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.64316 * 323.31581 * 10 9 7 12 12 C 1.55162 * 110.71805 * 86.45194 * 10 9 7 13 13 C 1.54912 * 101.58049 * 153.86734 * 12 10 9 14 14 N 1.47423 * 104.83235 * 322.99450 * 13 12 10 15 15 C 1.34779 * 125.64629 * 204.09446 * 14 13 12 16 16 O 1.21282 * 119.99927 * 180.02562 * 15 14 13 17 17 C 1.50699 * 120.00033 * 0.02562 * 15 14 13 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.35643 * 55.00184 * 18 17 15 20 20 C 1.50060 * 109.35643 * 295.27750 * 18 17 15 21 21 C 1.29262 * 124.21636 * 222.51345 * 20 18 17 22 22 C 1.50066 * 124.01814 * 0.72910 * 21 20 18 23 23 C 1.53021 * 110.14843 * 342.74153 * 22 21 20 24 24 C 1.53025 * 109.35375 * 174.72341 * 18 17 15 25 25 C 1.47023 * 108.70598 * 24.35364 * 14 13 12 26 26 H 0.97004 * 120.00149 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00018 * 359.97438 * 9 7 2 28 28 H 1.08995 * 111.00365 * 35.79837 * 12 10 9 29 29 H 1.08999 * 111.00462 * 271.94316 * 12 10 9 30 30 H 1.08999 * 110.36851 * 204.15442 * 13 12 10 31 31 H 1.09007 * 110.45979 * 81.87757 * 13 12 10 32 32 H 1.08993 * 109.47512 * 60.00410 * 17 15 14 33 33 H 1.09000 * 109.47247 * 300.00119 * 17 15 14 34 34 H 1.08003 * 117.96790 * 42.63872 * 20 18 17 35 35 H 1.07994 * 118.01872 * 180.57638 * 21 20 18 36 36 H 1.09004 * 109.36015 * 222.53434 * 22 21 20 37 37 H 1.08999 * 109.24833 * 102.87854 * 22 21 20 38 38 H 1.09005 * 109.64214 * 289.75167 * 23 22 21 39 39 H 1.09001 * 109.64493 * 169.12223 * 23 22 21 40 40 H 1.09002 * 109.64166 * 289.32644 * 24 18 17 41 41 H 1.08998 * 109.64521 * 49.95545 * 24 18 17 42 42 H 1.08998 * 109.87806 * 118.13091 * 25 14 13 43 43 H 1.08994 * 109.88400 * 239.30033 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9585 -3.5806 -0.6088 12 6 2.4102 -4.0873 1.4490 13 6 2.5143 -5.6257 1.2996 14 7 1.4564 -5.9838 0.3373 15 6 0.8633 -7.1897 0.2348 16 8 0.0008 -7.3725 -0.5980 17 6 1.2718 -8.3110 1.1551 18 6 0.4517 -9.5613 0.8308 19 1 0.5635 -9.8026 -0.2263 20 6 -0.9950 -9.2989 1.1308 21 6 -1.7798 -10.1411 1.7188 22 6 -1.3490 -11.4961 2.1986 23 6 -0.0310 -11.8968 1.5323 24 6 0.9581 -10.7330 1.6748 25 6 1.1600 -4.8095 -0.4962 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 1.6141 -3.8151 2.1420 29 1 3.3624 -3.6599 1.7630 30 1 2.3358 -6.1129 2.2582 31 1 3.4928 -5.9052 0.9091 32 1 1.0921 -8.0163 2.1889 33 1 2.3315 -8.5262 1.0175 34 1 -1.4088 -8.3460 0.8353 35 1 -2.8081 -9.8513 1.8766 36 1 -2.1170 -12.2286 1.9497 37 1 -1.2134 -11.4681 3.2797 38 1 -0.2027 -12.1044 0.4761 39 1 0.3727 -12.7829 2.0221 40 1 1.9413 -11.0422 1.3200 41 1 1.0207 -10.4314 2.7204 42 1 1.3812 -5.0308 -1.5403 43 1 0.1113 -4.5331 -0.3877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019027753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:24 Heat of formation + Delta-G solvation = -40.492268 kcal Electronic energy + Delta-G solvation = -21521.113695 eV Core-core repulsion = 18372.146661 eV Total energy + Delta-G solvation = -3148.967035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.25137 -39.56311 -38.40283 -35.91618 -33.77797 -33.14772 -31.87233 -31.00740 -29.73702 -27.87769 -25.59132 -24.20666 -23.16228 -22.83851 -21.55703 -20.11521 -19.33952 -18.84719 -18.07799 -17.28380 -16.91622 -16.54068 -16.42746 -15.62324 -15.36540 -15.08381 -14.78860 -14.64028 -14.16050 -13.98513 -13.69987 -13.52758 -13.25536 -13.19970 -13.08936 -12.98172 -12.91264 -12.64626 -12.39234 -12.34696 -12.14079 -11.78598 -11.70572 -11.65666 -11.40151 -11.04518 -10.93435 -10.67824 -9.88505 -9.65674 -9.05855 -7.95621 -5.26445 1.41946 1.48510 1.51789 1.57710 1.65443 1.99300 2.56808 3.35570 3.50950 3.76919 3.79461 3.81759 3.89647 4.00728 4.08589 4.27779 4.30023 4.39539 4.42778 4.48736 4.52102 4.54812 4.67558 4.72995 4.80725 4.83496 4.88346 4.91612 5.01859 5.09832 5.12169 5.20379 5.25120 5.27962 5.44512 5.44727 5.52488 5.52900 5.81122 6.10346 6.24574 6.58637 7.17779 7.30615 8.02654 8.26399 9.27922 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043278 B = 0.002992 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.829444 B = 9354.644581 C = 9621.516961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.977 3.023 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.273 1.273 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.733 5.733 10 C 0.165 3.835 11 H 0.070 0.930 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.617 5.617 15 C 0.516 3.484 16 O -0.588 6.588 17 C -0.117 4.117 18 C -0.041 4.041 19 H 0.067 0.933 20 C -0.156 4.156 21 C -0.164 4.164 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.109 4.109 25 C 0.109 3.891 26 H 0.251 0.749 27 H 0.370 0.630 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 -24.289 7.425 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.199 1.199 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.373 5.373 10 C 0.055 3.945 11 H 0.088 0.912 12 C -0.187 4.187 13 C -0.016 4.016 14 N -0.350 5.350 15 C 0.307 3.693 16 O -0.469 6.469 17 C -0.156 4.156 18 C -0.059 4.059 19 H 0.086 0.914 20 C -0.174 4.174 21 C -0.183 4.183 22 C -0.126 4.126 23 C -0.158 4.158 24 C -0.147 4.147 25 C -0.015 4.015 26 H 0.059 0.941 27 H 0.202 0.798 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.968 -24.325 6.973 25.999 hybrid contribution -0.813 1.724 -0.489 1.968 sum 5.154 -22.601 6.484 24.072 Atomic orbital electron populations 1.69837 1.06887 1.26202 1.59437 1.25635 0.96325 1.01392 1.03637 0.85163 0.77089 0.78841 0.78360 1.20305 1.22660 1.19925 1.19611 0.91691 0.84664 1.41165 0.89737 1.42562 1.05308 1.00837 1.88557 1.21395 0.93746 0.83899 0.95444 0.91240 1.23362 1.02459 0.94529 0.98311 1.22560 0.90887 0.94909 0.93212 1.48669 1.39734 1.10224 1.36413 1.21269 0.80450 0.82930 0.84681 1.90675 1.33787 1.82773 1.39684 1.21744 1.03167 0.91317 0.99391 1.19835 0.91437 0.94373 1.00287 0.91435 1.22079 0.96590 0.99059 0.99711 1.22203 0.99045 0.96985 1.00029 1.20505 0.97900 0.93396 1.00798 1.21627 0.94969 0.98440 1.00778 1.21667 0.99276 0.93518 1.00204 1.21932 0.98862 0.86107 0.94601 0.94069 0.79786 0.92807 0.89114 0.87975 0.88498 0.87156 0.85516 0.90848 0.88628 0.90492 0.89756 0.92693 0.89533 0.89710 0.90453 0.92296 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.98 45.43 29.55 68.60 2.03 47.45 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.24 -12.94 9.98 84.03 0.84 -12.11 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.73 -36.68 5.25 -317.31 -1.67 -38.34 16 10 C 0.16 6.25 3.58 46.19 0.17 6.42 16 11 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 12 C -0.15 -4.42 6.77 31.99 0.22 -4.20 16 13 C 0.11 2.31 6.69 86.86 0.58 2.90 16 14 N -0.62 -18.20 3.33 -811.77 -2.70 -20.90 16 15 C 0.52 15.30 7.48 87.66 0.66 15.95 16 16 O -0.59 -22.82 14.60 -3.04 -0.04 -22.86 16 17 C -0.12 -2.18 4.14 29.85 0.12 -2.06 16 18 C -0.04 -0.82 2.12 -11.73 -0.02 -0.84 16 19 H 0.07 1.61 7.95 -2.39 -0.02 1.59 16 20 C -0.16 -3.89 8.39 27.21 0.23 -3.66 16 21 C -0.16 -3.44 9.80 27.21 0.27 -3.17 16 22 C -0.09 -1.29 6.11 29.66 0.18 -1.11 16 23 C -0.12 -1.55 6.01 30.73 0.18 -1.36 16 24 C -0.11 -1.41 5.30 30.73 0.16 -1.25 16 25 C 0.11 4.03 6.63 86.73 0.57 4.60 16 26 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.37 20.54 7.51 -92.71 -0.70 19.84 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.10 1.63 7.48 -2.39 -0.02 1.62 16 31 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.11 1.72 7.85 -2.39 -0.02 1.71 16 33 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 2.36 6.51 -2.91 -0.02 2.34 16 35 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 0.82 8.12 -2.38 -0.02 0.80 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.64 7.69 -2.39 -0.02 1.62 16 Total: -1.00 -71.13 342.43 2.80 -68.32 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.28 Total: 29.92 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 4.62 Total: -3.85 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -4.08 Total: -118.99 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.04 Total: -22.86 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -71.13 2.80 -68.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019027753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.831 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds