Wall clock time and date at job start Tue Mar 31 2020 00:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99590 * 2 1 4 4 H 1.48493 * 109.46985 * 269.99968 * 3 2 1 5 5 H 1.48495 * 109.47023 * 30.00560 * 3 2 1 6 6 H 1.48500 * 109.46858 * 150.00231 * 3 2 1 7 7 C 1.38805 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00406 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00150 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99986 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.89081 * 328.87558 * 10 9 7 12 12 C 1.55160 * 111.00672 * 92.80719 * 10 9 7 13 13 C 1.54333 * 103.02072 * 153.37921 * 12 10 9 14 14 N 1.47024 * 107.26785 * 338.13737 * 13 12 10 15 15 C 1.34766 * 125.64793 * 178.85150 * 14 13 12 16 16 O 1.21284 * 120.00199 * 179.69395 * 15 14 13 17 17 C 1.50698 * 120.00298 * 359.69344 * 15 14 13 18 18 C 1.52995 * 109.47553 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.24387 * 304.65689 * 18 17 15 20 20 C 1.50172 * 109.55933 * 64.24673 * 18 17 15 21 21 C 1.29440 * 124.14460 * 137.02257 * 20 18 17 22 22 C 1.50068 * 124.08015 * 359.75709 * 21 20 18 23 23 C 1.53028 * 110.14332 * 17.13513 * 22 21 20 24 24 C 1.53025 * 109.36262 * 184.99839 * 18 17 15 25 25 C 1.47425 * 108.70275 * 358.58669 * 14 13 12 26 26 H 0.96997 * 119.99934 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99627 * 0.02562 * 9 7 2 28 28 H 1.09001 * 110.71353 * 271.93476 * 12 10 9 29 29 H 1.08993 * 110.72045 * 35.20808 * 12 10 9 30 30 H 1.09007 * 109.98900 * 218.66260 * 13 12 10 31 31 H 1.09000 * 109.77764 * 97.49477 * 13 12 10 32 32 H 1.08999 * 109.47123 * 59.99894 * 17 15 14 33 33 H 1.09007 * 109.47129 * 299.99675 * 17 15 14 34 34 H 1.07996 * 117.88631 * 317.27254 * 20 18 17 35 35 H 1.08006 * 117.96034 * 179.73940 * 21 20 18 36 36 H 1.09000 * 109.35920 * 256.92754 * 22 21 20 37 37 H 1.09006 * 109.24835 * 137.26782 * 22 21 20 38 38 H 1.09000 * 109.63704 * 190.87646 * 23 22 21 39 39 H 1.09000 * 109.64344 * 70.24823 * 23 22 21 40 40 H 1.09002 * 109.64203 * 70.67022 * 24 18 17 41 41 H 1.09002 * 109.64069 * 310.25405 * 24 18 17 42 42 H 1.08996 * 110.37089 * 143.19427 * 25 14 13 43 43 H 1.09000 * 110.36692 * 265.52064 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5518 -3.2431 0.5268 12 6 4.4512 -2.9173 -1.4468 13 6 5.7171 -3.7794 -1.2570 14 7 6.3286 -3.3817 0.0196 15 6 7.4423 -3.9170 0.5574 16 8 7.8617 -3.5052 1.6184 17 6 8.1668 -5.0271 -0.1593 18 6 9.3877 -5.4513 0.6593 19 1 10.0135 -4.5793 0.8493 20 6 8.9378 -6.0314 1.9694 21 6 9.4401 -7.0988 2.5020 22 6 10.5398 -7.9103 1.8823 23 6 11.2512 -7.0946 0.8005 24 6 10.1902 -6.4898 -0.1276 25 6 5.5252 -2.2961 0.6106 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3620 -0.0004 28 1 3.6384 -3.5090 -1.8680 29 1 4.6676 -2.0541 -2.0761 30 1 6.4158 -3.6004 -2.0744 31 1 5.4437 -4.8340 -1.2244 32 1 8.4900 -4.6766 -1.1395 33 1 7.4974 -5.8789 -0.2805 34 1 8.1422 -5.5277 2.4982 35 1 9.0431 -7.4257 3.4518 36 1 10.1172 -8.8107 1.4364 37 1 11.2573 -8.1914 2.6533 38 1 11.9122 -7.7444 0.2270 39 1 11.8299 -6.2961 1.2649 40 1 10.6768 -6.0102 -0.9769 41 1 9.5236 -7.2755 -0.4830 42 1 5.4855 -2.4005 1.6949 43 1 5.9393 -1.3256 0.3371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019027754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:28 Heat of formation + Delta-G solvation = -18.773125 kcal Electronic energy + Delta-G solvation = -21535.858216 eV Core-core repulsion = 18387.832994 eV Total energy + Delta-G solvation = -3148.025222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17817 -38.65637 -37.23663 -34.29830 -32.86046 -31.62202 -31.15726 -29.90055 -28.60140 -26.94443 -23.76083 -22.73068 -22.46863 -21.97611 -20.26364 -18.97606 -18.09647 -17.78907 -16.98502 -16.23005 -16.10551 -15.26814 -14.90413 -14.44465 -14.22148 -13.85020 -13.49600 -13.40496 -13.23327 -12.86977 -12.71483 -12.56146 -12.33821 -12.24883 -12.10797 -11.85636 -11.64911 -11.45457 -11.09097 -10.92109 -10.79039 -10.71045 -10.49660 -10.28810 -10.10849 -9.68657 -9.60429 -9.07492 -9.02107 -8.48592 -7.39139 -5.85034 -3.22846 2.25283 2.72724 3.08457 3.33462 3.36621 3.41928 4.40284 4.51391 4.52233 4.54780 4.72088 4.89537 4.94800 5.04088 5.14416 5.18922 5.24392 5.28145 5.36851 5.40071 5.46457 5.48442 5.52155 5.55875 5.64343 5.68461 5.71721 5.85086 5.85757 5.87113 6.11627 6.12435 6.17258 6.24046 6.44121 6.50485 6.64135 6.74535 6.89935 7.66353 7.88790 8.26895 8.33367 9.09892 9.82271 10.00381 11.32649 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.003079 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.458891 B = 9092.987573 C = 9176.359738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.738 5.738 10 C 0.177 3.823 11 H 0.075 0.925 12 C -0.155 4.155 13 C 0.101 3.899 14 N -0.615 5.615 15 C 0.525 3.475 16 O -0.543 6.543 17 C -0.128 4.128 18 C -0.043 4.043 19 H 0.087 0.913 20 C -0.133 4.133 21 C -0.173 4.173 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.116 4.116 25 C 0.094 3.906 26 H 0.261 0.739 27 H 0.364 0.636 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.896 -14.778 -2.401 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.093 0.907 12 C -0.196 4.196 13 C -0.022 4.022 14 N -0.350 5.350 15 C 0.314 3.686 16 O -0.421 6.421 17 C -0.168 4.168 18 C -0.062 4.062 19 H 0.105 0.895 20 C -0.150 4.150 21 C -0.191 4.191 22 C -0.126 4.126 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.029 4.029 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.899 -14.635 -1.782 25.576 hybrid contribution 0.364 1.293 -0.074 1.346 sum 21.264 -13.342 -1.856 25.171 Atomic orbital electron populations 1.69696 1.05124 1.26029 1.56842 1.24676 0.95240 0.97285 1.01571 0.86566 0.79319 0.84907 0.77851 1.20966 1.21592 1.20195 1.19044 0.80162 0.94868 1.43883 0.88998 1.42617 1.04156 1.01527 1.89641 1.21267 0.89538 0.90116 0.92546 0.90708 1.23387 0.95189 0.99577 1.01486 1.22111 0.95626 0.99347 0.85165 1.48505 1.26078 1.37453 1.22915 1.20322 0.79546 0.83303 0.85476 1.90691 1.65966 1.62863 1.22613 1.21673 0.97660 0.97551 0.99894 1.19855 0.95150 0.98385 0.92803 0.89520 1.22227 1.00148 0.96125 0.96545 1.22007 0.99276 0.97474 1.00327 1.20432 0.96408 0.98005 0.97758 1.21589 0.97570 0.99576 0.96982 1.21666 0.97621 0.98278 0.97773 1.22589 0.91685 0.89592 0.99054 0.92894 0.80320 0.90186 0.90746 0.91935 0.91670 0.88840 0.88865 0.87032 0.88212 0.91212 0.91476 0.91749 0.91723 0.91616 0.91563 0.90413 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.62 27.74 -169.99 -4.71 16.91 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.25 -6.79 10.44 -15.06 -0.16 -6.95 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 N -0.74 -16.73 5.05 -51.35 -0.26 -16.99 16 10 C 0.18 3.23 3.72 -65.78 -0.24 2.98 16 11 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 12 C -0.16 -2.33 6.64 -24.89 -0.17 -2.49 16 13 C 0.10 1.20 6.49 -3.06 -0.02 1.18 16 14 N -0.62 -8.82 3.33 -170.51 -0.57 -9.39 16 15 C 0.52 7.47 7.49 -10.99 -0.08 7.38 16 16 O -0.54 -9.59 14.50 5.55 0.08 -9.51 16 17 C -0.13 -1.28 4.34 -27.89 -0.12 -1.40 16 18 C -0.04 -0.44 2.12 -92.02 -0.19 -0.64 16 19 H 0.09 1.00 7.96 -51.93 -0.41 0.59 16 20 C -0.13 -1.54 8.42 -35.85 -0.30 -1.84 16 21 C -0.17 -1.74 9.80 -35.90 -0.35 -2.10 16 22 C -0.09 -0.71 6.12 -28.17 -0.17 -0.88 16 23 C -0.12 -0.90 6.01 -26.51 -0.16 -1.06 16 24 C -0.12 -0.90 5.29 -26.52 -0.14 -1.04 16 25 C 0.09 1.58 6.55 -2.52 -0.02 1.56 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.36 8.16 5.62 -40.82 -0.23 7.93 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.11 1.56 6.48 -52.49 -0.34 1.22 16 35 H 0.10 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 42 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 43 H 0.06 1.08 8.00 -51.93 -0.42 0.67 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -31.57 340.52 -9.10 -40.67 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.32 Total: 6.13 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.22 Total: -5.14 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.05 Total: -54.19 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.57 -9.10 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019027754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.894 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds