Wall clock time and date at job start Tue Mar 31 2020 00:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99590 * 2 1 4 4 H 1.48493 * 109.46985 * 269.99968 * 3 2 1 5 5 H 1.48495 * 109.47023 * 30.00560 * 3 2 1 6 6 H 1.48500 * 109.46858 * 150.00231 * 3 2 1 7 7 C 1.38805 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00406 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00150 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99986 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.89081 * 328.87558 * 10 9 7 12 12 C 1.55160 * 111.00672 * 92.80719 * 10 9 7 13 13 C 1.54333 * 103.02072 * 153.37921 * 12 10 9 14 14 N 1.47024 * 107.26785 * 338.13737 * 13 12 10 15 15 C 1.34766 * 125.64793 * 178.85150 * 14 13 12 16 16 O 1.21284 * 120.00199 * 179.69395 * 15 14 13 17 17 C 1.50698 * 120.00298 * 359.69344 * 15 14 13 18 18 C 1.52995 * 109.47553 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.24387 * 304.65689 * 18 17 15 20 20 C 1.50172 * 109.55933 * 64.24673 * 18 17 15 21 21 C 1.29440 * 124.14460 * 137.02257 * 20 18 17 22 22 C 1.50068 * 124.08015 * 359.75709 * 21 20 18 23 23 C 1.53028 * 110.14332 * 17.13513 * 22 21 20 24 24 C 1.53025 * 109.36262 * 184.99839 * 18 17 15 25 25 C 1.47425 * 108.70275 * 358.58669 * 14 13 12 26 26 H 0.96997 * 119.99934 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99627 * 0.02562 * 9 7 2 28 28 H 1.09001 * 110.71353 * 271.93476 * 12 10 9 29 29 H 1.08993 * 110.72045 * 35.20808 * 12 10 9 30 30 H 1.09007 * 109.98900 * 218.66260 * 13 12 10 31 31 H 1.09000 * 109.77764 * 97.49477 * 13 12 10 32 32 H 1.08999 * 109.47123 * 59.99894 * 17 15 14 33 33 H 1.09007 * 109.47129 * 299.99675 * 17 15 14 34 34 H 1.07996 * 117.88631 * 317.27254 * 20 18 17 35 35 H 1.08006 * 117.96034 * 179.73940 * 21 20 18 36 36 H 1.09000 * 109.35920 * 256.92754 * 22 21 20 37 37 H 1.09006 * 109.24835 * 137.26782 * 22 21 20 38 38 H 1.09000 * 109.63704 * 190.87646 * 23 22 21 39 39 H 1.09000 * 109.64344 * 70.24823 * 23 22 21 40 40 H 1.09002 * 109.64203 * 70.67022 * 24 18 17 41 41 H 1.09002 * 109.64069 * 310.25405 * 24 18 17 42 42 H 1.08996 * 110.37089 * 143.19427 * 25 14 13 43 43 H 1.09000 * 110.36692 * 265.52064 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5518 -3.2431 0.5268 12 6 4.4512 -2.9173 -1.4468 13 6 5.7171 -3.7794 -1.2570 14 7 6.3286 -3.3817 0.0196 15 6 7.4423 -3.9170 0.5574 16 8 7.8617 -3.5052 1.6184 17 6 8.1668 -5.0271 -0.1593 18 6 9.3877 -5.4513 0.6593 19 1 10.0135 -4.5793 0.8493 20 6 8.9378 -6.0314 1.9694 21 6 9.4401 -7.0988 2.5020 22 6 10.5398 -7.9103 1.8823 23 6 11.2512 -7.0946 0.8005 24 6 10.1902 -6.4898 -0.1276 25 6 5.5252 -2.2961 0.6106 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3620 -0.0004 28 1 3.6384 -3.5090 -1.8680 29 1 4.6676 -2.0541 -2.0761 30 1 6.4158 -3.6004 -2.0744 31 1 5.4437 -4.8340 -1.2244 32 1 8.4900 -4.6766 -1.1395 33 1 7.4974 -5.8789 -0.2805 34 1 8.1422 -5.5277 2.4982 35 1 9.0431 -7.4257 3.4518 36 1 10.1172 -8.8107 1.4364 37 1 11.2573 -8.1914 2.6533 38 1 11.9122 -7.7444 0.2270 39 1 11.8299 -6.2961 1.2649 40 1 10.6768 -6.0102 -0.9769 41 1 9.5236 -7.2755 -0.4830 42 1 5.4855 -2.4005 1.6949 43 1 5.9393 -1.3256 0.3371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019027754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:28 Heat of formation + Delta-G solvation = -38.072758 kcal Electronic energy + Delta-G solvation = -21536.695111 eV Core-core repulsion = 18387.832994 eV Total energy + Delta-G solvation = -3148.862117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.26444 -39.57338 -38.43512 -36.04033 -33.82309 -33.36071 -31.85551 -31.32814 -29.84359 -27.96398 -25.35230 -24.14482 -23.16012 -22.79798 -21.77220 -20.08106 -19.76198 -18.83415 -18.07963 -17.52509 -16.90324 -16.43428 -16.38792 -15.77949 -15.40906 -15.05371 -14.77156 -14.50501 -14.38360 -14.16868 -13.56645 -13.53912 -13.51895 -13.37535 -13.22146 -13.11636 -12.95789 -12.66277 -12.38561 -12.30551 -12.19748 -11.84178 -11.68993 -11.60332 -11.40535 -11.04485 -11.00809 -10.68151 -9.87020 -9.66205 -9.36547 -8.04605 -5.39781 1.38214 1.40433 1.42365 1.47434 1.64648 1.96560 2.46530 3.24577 3.47793 3.53681 3.77896 3.82841 3.86584 3.97309 4.07371 4.18603 4.28742 4.34565 4.41505 4.43894 4.50340 4.54355 4.67884 4.72373 4.80686 4.81751 4.88257 4.90998 4.97709 5.09871 5.11947 5.21346 5.24673 5.26268 5.38214 5.44638 5.52254 5.74032 5.82039 6.10543 6.18760 6.56610 7.03109 7.16696 7.77481 7.96276 9.16321 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.003079 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.458891 B = 9092.987573 C = 9176.359738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.256 1.256 7 C -0.231 4.231 8 H 0.062 0.938 9 N -0.743 5.743 10 C 0.167 3.833 11 H 0.061 0.939 12 C -0.146 4.146 13 C 0.107 3.893 14 N -0.617 5.617 15 C 0.519 3.481 16 O -0.586 6.586 17 C -0.118 4.118 18 C -0.041 4.041 19 H 0.066 0.934 20 C -0.155 4.155 21 C -0.165 4.165 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.110 4.110 25 C 0.103 3.897 26 H 0.259 0.741 27 H 0.367 0.633 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.800 -16.158 -4.323 29.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.181 1.181 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.386 5.386 10 C 0.058 3.942 11 H 0.079 0.921 12 C -0.187 4.187 13 C -0.015 4.015 14 N -0.351 5.351 15 C 0.310 3.690 16 O -0.466 6.466 17 C -0.157 4.157 18 C -0.060 4.060 19 H 0.084 0.916 20 C -0.174 4.174 21 C -0.183 4.183 22 C -0.126 4.126 23 C -0.158 4.158 24 C -0.147 4.147 25 C -0.022 4.022 26 H 0.067 0.933 27 H 0.200 0.800 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.861 -16.067 -3.729 29.007 hybrid contribution -0.540 1.591 0.617 1.790 sum 23.321 -14.476 -3.111 27.624 Atomic orbital electron populations 1.69869 1.07067 1.26743 1.59416 1.25461 0.96056 1.01136 1.02505 0.85457 0.78517 0.79857 0.78230 1.20032 1.22445 1.18061 1.18993 0.82106 0.93610 1.41495 0.92013 1.42571 1.02650 1.03361 1.89980 1.21419 0.89716 0.87988 0.95124 0.92129 1.23208 0.97006 1.00142 0.98333 1.22234 0.94523 0.99911 0.84811 1.48600 1.26046 1.36808 1.23629 1.21189 0.79123 0.83635 0.85082 1.90678 1.67033 1.64269 1.24652 1.21736 0.97306 0.96265 1.00393 1.19839 0.95260 0.98378 0.92485 0.91551 1.22150 1.00418 0.96950 0.97849 1.22246 0.99172 0.96916 0.99959 1.20503 0.95778 0.98079 0.98269 1.21623 0.97689 0.99568 0.96951 1.21657 0.97499 0.97785 0.97801 1.22266 0.91170 0.90743 0.97972 0.93260 0.79981 0.89995 0.90919 0.88531 0.89127 0.85795 0.86979 0.90424 0.88496 0.89765 0.90557 0.89668 0.92723 0.89933 0.90455 0.92388 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.06 13.97 21.65 0.30 -61.75 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.95 44.96 27.74 68.60 1.90 46.86 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.26 -11.07 6.52 99.48 0.65 -10.42 16 7 C -0.23 -12.81 10.44 84.03 0.88 -11.93 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 N -0.74 -33.58 5.05 -316.37 -1.60 -35.18 16 10 C 0.17 6.04 3.72 46.39 0.17 6.22 16 11 H 0.06 2.35 8.09 -2.39 -0.02 2.33 16 12 C -0.15 -4.08 6.64 31.79 0.21 -3.87 16 13 C 0.11 2.17 6.49 86.73 0.56 2.73 16 14 N -0.62 -16.55 3.33 -811.76 -2.70 -19.25 16 15 C 0.52 14.07 7.49 87.66 0.66 14.73 16 16 O -0.59 -20.99 14.50 -3.04 -0.04 -21.04 16 17 C -0.12 -2.00 4.34 29.85 0.13 -1.87 16 18 C -0.04 -0.76 2.12 -11.70 -0.02 -0.79 16 19 H 0.07 1.49 7.96 -2.39 -0.02 1.48 16 20 C -0.16 -3.57 8.42 27.07 0.23 -3.34 16 21 C -0.16 -3.17 9.80 27.04 0.27 -2.90 16 22 C -0.09 -1.19 6.12 29.66 0.18 -1.01 16 23 C -0.12 -1.45 6.01 30.73 0.18 -1.27 16 24 C -0.11 -1.32 5.29 30.73 0.16 -1.16 16 25 C 0.10 3.41 6.55 86.86 0.57 3.98 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.37 16.06 5.62 -92.71 -0.52 15.54 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.08 2.29 6.48 -2.91 -0.02 2.27 16 35 H 0.10 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.79 8.10 -2.39 -0.02 0.78 16 42 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 43 H 0.06 2.10 8.00 -2.39 -0.02 2.08 16 Total: -1.00 -71.73 340.52 2.90 -68.83 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.39 Total: 25.03 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 4.64 Total: -3.50 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -3.99 Total: -116.18 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.04 Total: -21.04 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Total: -71.73 2.90 -68.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019027754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.756 kcal (2) G-P(sol) polarization free energy of solvation -71.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds