Wall clock time and date at job start Tue Mar 31 2020 00:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00190 * 2 1 4 4 H 1.48507 * 109.46999 * 269.99776 * 3 2 1 5 5 H 1.48494 * 109.46934 * 29.99764 * 3 2 1 6 6 H 1.48498 * 109.47158 * 150.00126 * 3 2 1 7 7 C 1.38811 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00311 * 359.97438 * 7 2 1 9 9 N 1.36944 * 120.00291 * 180.02562 * 7 2 1 10 10 C 1.46491 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.88547 * 328.87654 * 10 9 7 12 12 C 1.55153 * 111.00594 * 92.80362 * 10 9 7 13 13 C 1.54339 * 103.02416 * 153.38055 * 12 10 9 14 14 N 1.47015 * 107.26094 * 338.14031 * 13 12 10 15 15 C 1.34780 * 125.64739 * 178.84648 * 14 13 12 16 16 O 1.21280 * 120.00423 * 179.68855 * 15 14 13 17 17 C 1.50701 * 119.99795 * 359.69531 * 15 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 H 1.08999 * 109.63933 * 305.42059 * 18 17 15 20 20 C 1.53024 * 109.64069 * 66.05306 * 18 17 15 21 21 C 1.50074 * 110.14520 * 169.12403 * 20 18 17 22 22 C 1.29441 * 124.07518 * 342.86772 * 21 20 18 23 23 C 1.50062 * 124.07561 * 0.47060 * 22 21 20 24 24 C 1.53023 * 110.15152 * 342.86600 * 23 22 21 25 25 C 1.47427 * 108.70863 * 358.58502 * 14 13 12 26 26 H 0.96997 * 119.99685 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99507 * 359.97438 * 9 7 2 28 28 H 1.09005 * 110.71735 * 271.93801 * 12 10 9 29 29 H 1.08999 * 110.72368 * 35.03096 * 12 10 9 30 30 H 1.08994 * 109.98983 * 218.66498 * 13 12 10 31 31 H 1.08996 * 109.77601 * 97.49506 * 13 12 10 32 32 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 33 33 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 34 34 H 1.09002 * 109.36176 * 289.32857 * 20 18 17 35 35 H 1.09001 * 109.35829 * 48.91552 * 20 18 17 36 36 H 1.07999 * 117.95956 * 162.85166 * 21 20 18 37 37 H 1.08007 * 117.96062 * 180.49944 * 22 21 20 38 38 H 1.09012 * 109.36005 * 222.66286 * 23 22 21 39 39 H 1.08998 * 109.35829 * 103.07916 * 23 22 21 40 40 H 1.08993 * 109.64371 * 289.75731 * 24 23 22 41 41 H 1.08996 * 109.64559 * 169.11292 * 24 23 22 42 42 H 1.09000 * 110.36996 * 143.19200 * 25 14 13 43 43 H 1.09001 * 110.36275 * 265.52138 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5512 -3.2434 0.5271 12 6 4.4521 -2.9168 -1.4456 13 6 5.7179 -3.7791 -1.2553 14 7 6.3283 -3.3820 0.0218 15 6 7.4417 -3.9176 0.5604 16 8 7.8603 -3.5063 1.6218 17 6 8.1666 -5.0275 -0.1564 18 6 9.3876 -5.4513 0.6624 19 1 10.0109 -4.5811 0.8679 20 6 8.9300 -6.0840 1.9785 21 6 10.0907 -6.7394 2.6680 22 6 11.2062 -7.0390 2.0838 23 6 11.4985 -6.7637 0.6379 24 6 10.1975 -6.4925 -0.1206 25 6 5.5246 -2.2966 0.6128 26 1 -0.4849 0.8400 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 3.6396 -3.5083 -1.8678 29 1 4.6659 -2.0532 -2.0752 30 1 6.4171 -3.5998 -2.0720 31 1 5.4444 -4.8337 -1.2235 32 1 7.4972 -5.8791 -0.2785 33 1 8.4906 -4.6766 -1.1361 34 1 8.5146 -5.3115 2.6256 35 1 8.1632 -6.8309 1.7729 36 1 9.9890 -6.9755 3.7169 37 1 11.9743 -7.5173 2.6736 38 1 11.9988 -7.6274 0.1995 39 1 12.1502 -5.8935 0.5603 40 1 9.6235 -7.4151 -0.2052 41 1 10.4261 -6.1070 -1.1142 42 1 5.4840 -2.4016 1.6970 43 1 5.9390 -1.3260 0.3400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019244097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:37 Heat of formation + Delta-G solvation = -19.336071 kcal Electronic energy + Delta-G solvation = -21556.497140 eV Core-core repulsion = 18408.447507 eV Total energy + Delta-G solvation = -3148.049633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18241 -38.65294 -37.22295 -34.29781 -32.95770 -31.63403 -30.91893 -29.90742 -28.62270 -26.93450 -23.76657 -23.22212 -22.65430 -21.33449 -20.25532 -18.95927 -18.14576 -17.78426 -16.89426 -16.25523 -16.06731 -15.30527 -14.90272 -14.40108 -14.13578 -13.98655 -13.50229 -13.42824 -13.17348 -12.94557 -12.63042 -12.60127 -12.30483 -12.25661 -12.08540 -11.88474 -11.70497 -11.45533 -10.93740 -10.86109 -10.80686 -10.68653 -10.50173 -10.31291 -10.10831 -9.68768 -9.60869 -9.10330 -9.02096 -8.48088 -7.39152 -5.85083 -3.22847 2.15868 2.72848 3.08072 3.33451 3.36650 3.41957 4.42397 4.45891 4.52237 4.56160 4.80277 4.89518 4.96523 5.05090 5.17406 5.19284 5.22656 5.28875 5.39220 5.41641 5.49419 5.50893 5.55292 5.60401 5.65363 5.65910 5.77740 5.85257 5.86433 5.99013 6.11576 6.13803 6.23503 6.26126 6.44838 6.50485 6.51711 6.74617 6.83018 7.66899 7.88818 8.27632 8.33346 9.09905 9.82287 10.00384 11.32612 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042475 B = 0.003083 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.053855 B = 9078.654153 C = 9241.484235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.738 5.738 10 C 0.177 3.823 11 H 0.075 0.925 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.615 5.615 15 C 0.525 3.475 16 O -0.543 6.543 17 C -0.132 4.132 18 C -0.071 4.071 19 H 0.080 0.920 20 C -0.094 4.094 21 C -0.143 4.143 22 C -0.169 4.169 23 C -0.088 4.088 24 C -0.116 4.116 25 C 0.094 3.906 26 H 0.261 0.739 27 H 0.363 0.637 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.867 -14.244 -2.238 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.093 0.907 12 C -0.197 4.197 13 C -0.022 4.022 14 N -0.350 5.350 15 C 0.314 3.686 16 O -0.421 6.421 17 C -0.171 4.171 18 C -0.090 4.090 19 H 0.099 0.901 20 C -0.130 4.130 21 C -0.161 4.161 22 C -0.187 4.187 23 C -0.125 4.125 24 C -0.154 4.154 25 C -0.029 4.029 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.875 -14.105 -1.617 25.245 hybrid contribution 0.495 1.206 -0.086 1.306 sum 21.370 -12.899 -1.703 25.019 Atomic orbital electron populations 1.69694 1.05127 1.26028 1.56834 1.24676 0.95240 0.97286 1.01570 0.86567 0.79321 0.84906 0.77852 1.20969 1.21594 1.20191 1.19045 0.80162 0.94864 1.43890 0.88999 1.42618 1.04157 1.01533 1.89640 1.21264 0.89549 0.90114 0.92535 0.90702 1.23387 0.95199 0.99593 1.01488 1.22099 0.95619 0.99327 0.85162 1.48506 1.26114 1.37484 1.22860 1.20337 0.79491 0.83337 0.85461 1.90667 1.65944 1.62876 1.22635 1.21739 0.97823 0.97542 1.00046 1.20962 0.95102 0.98373 0.94515 0.90148 1.20646 0.96162 0.99727 0.96506 1.22120 0.95541 0.98976 0.99492 1.21988 0.97942 1.02166 0.96633 1.20407 0.97633 1.01454 0.93038 1.21681 0.96159 0.99113 0.98404 1.22588 0.91672 0.89600 0.99059 0.92894 0.80322 0.90213 0.90751 0.91961 0.91673 0.88951 0.89006 0.89012 0.91353 0.88213 0.88351 0.91290 0.91069 0.91648 0.91605 0.90394 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.78 10.44 -15.06 -0.16 -6.94 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.74 -16.69 5.05 -51.36 -0.26 -16.95 16 10 C 0.18 3.21 3.72 -65.79 -0.24 2.97 16 11 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 12 C -0.16 -2.32 6.64 -24.89 -0.17 -2.49 16 13 C 0.10 1.20 6.49 -3.06 -0.02 1.18 16 14 N -0.62 -8.75 3.33 -170.51 -0.57 -9.31 16 15 C 0.52 7.37 7.61 -10.98 -0.08 7.29 16 16 O -0.54 -9.46 14.35 5.56 0.08 -9.38 16 17 C -0.13 -1.29 4.37 -27.88 -0.12 -1.41 16 18 C -0.07 -0.71 1.87 -90.40 -0.17 -0.88 16 19 H 0.08 0.95 7.93 -51.93 -0.41 0.53 16 20 C -0.09 -1.02 5.05 -28.17 -0.14 -1.16 16 21 C -0.14 -1.43 9.80 -35.90 -0.35 -1.78 16 22 C -0.17 -1.51 9.80 -35.90 -0.35 -1.86 16 23 C -0.09 -0.69 6.12 -28.18 -0.17 -0.86 16 24 C -0.12 -0.91 5.31 -26.51 -0.14 -1.05 16 25 C 0.09 1.57 6.55 -2.53 -0.02 1.55 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.36 8.14 5.62 -40.82 -0.23 7.91 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.23 6.30 -51.93 -0.33 0.90 16 35 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.10 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 43 H 0.06 1.08 8.00 -51.93 -0.42 0.66 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -31.45 340.33 -9.09 -40.54 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.30 Total: 6.15 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.23 Total: -5.29 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.05 Total: -54.03 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.45 -9.09 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019244097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.207 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds