Wall clock time and date at job start Tue Mar 31 2020 00:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00190 * 2 1 4 4 H 1.48507 * 109.46999 * 269.99776 * 3 2 1 5 5 H 1.48494 * 109.46934 * 29.99764 * 3 2 1 6 6 H 1.48498 * 109.47158 * 150.00126 * 3 2 1 7 7 C 1.38811 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00311 * 359.97438 * 7 2 1 9 9 N 1.36944 * 120.00291 * 180.02562 * 7 2 1 10 10 C 1.46491 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.88547 * 328.87654 * 10 9 7 12 12 C 1.55153 * 111.00594 * 92.80362 * 10 9 7 13 13 C 1.54339 * 103.02416 * 153.38055 * 12 10 9 14 14 N 1.47015 * 107.26094 * 338.14031 * 13 12 10 15 15 C 1.34780 * 125.64739 * 178.84648 * 14 13 12 16 16 O 1.21280 * 120.00423 * 179.68855 * 15 14 13 17 17 C 1.50701 * 119.99795 * 359.69531 * 15 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 H 1.08999 * 109.63933 * 305.42059 * 18 17 15 20 20 C 1.53024 * 109.64069 * 66.05306 * 18 17 15 21 21 C 1.50074 * 110.14520 * 169.12403 * 20 18 17 22 22 C 1.29441 * 124.07518 * 342.86772 * 21 20 18 23 23 C 1.50062 * 124.07561 * 0.47060 * 22 21 20 24 24 C 1.53023 * 110.15152 * 342.86600 * 23 22 21 25 25 C 1.47427 * 108.70863 * 358.58502 * 14 13 12 26 26 H 0.96997 * 119.99685 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99507 * 359.97438 * 9 7 2 28 28 H 1.09005 * 110.71735 * 271.93801 * 12 10 9 29 29 H 1.08999 * 110.72368 * 35.03096 * 12 10 9 30 30 H 1.08994 * 109.98983 * 218.66498 * 13 12 10 31 31 H 1.08996 * 109.77601 * 97.49506 * 13 12 10 32 32 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 33 33 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 34 34 H 1.09002 * 109.36176 * 289.32857 * 20 18 17 35 35 H 1.09001 * 109.35829 * 48.91552 * 20 18 17 36 36 H 1.07999 * 117.95956 * 162.85166 * 21 20 18 37 37 H 1.08007 * 117.96062 * 180.49944 * 22 21 20 38 38 H 1.09012 * 109.36005 * 222.66286 * 23 22 21 39 39 H 1.08998 * 109.35829 * 103.07916 * 23 22 21 40 40 H 1.08993 * 109.64371 * 289.75731 * 24 23 22 41 41 H 1.08996 * 109.64559 * 169.11292 * 24 23 22 42 42 H 1.09000 * 110.36996 * 143.19200 * 25 14 13 43 43 H 1.09001 * 110.36275 * 265.52138 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5512 -3.2434 0.5271 12 6 4.4521 -2.9168 -1.4456 13 6 5.7179 -3.7791 -1.2553 14 7 6.3283 -3.3820 0.0218 15 6 7.4417 -3.9176 0.5604 16 8 7.8603 -3.5063 1.6218 17 6 8.1666 -5.0275 -0.1564 18 6 9.3876 -5.4513 0.6624 19 1 10.0109 -4.5811 0.8679 20 6 8.9300 -6.0840 1.9785 21 6 10.0907 -6.7394 2.6680 22 6 11.2062 -7.0390 2.0838 23 6 11.4985 -6.7637 0.6379 24 6 10.1975 -6.4925 -0.1206 25 6 5.5246 -2.2966 0.6128 26 1 -0.4849 0.8400 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 3.6396 -3.5083 -1.8678 29 1 4.6659 -2.0532 -2.0752 30 1 6.4171 -3.5998 -2.0720 31 1 5.4444 -4.8337 -1.2235 32 1 7.4972 -5.8791 -0.2785 33 1 8.4906 -4.6766 -1.1361 34 1 8.5146 -5.3115 2.6256 35 1 8.1632 -6.8309 1.7729 36 1 9.9890 -6.9755 3.7169 37 1 11.9743 -7.5173 2.6736 38 1 11.9988 -7.6274 0.1995 39 1 12.1502 -5.8935 0.5603 40 1 9.6235 -7.4151 -0.2052 41 1 10.4261 -6.1070 -1.1142 42 1 5.4840 -2.4016 1.6970 43 1 5.9390 -1.3260 0.3400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019244097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:36 Heat of formation + Delta-G solvation = -38.451819 kcal Electronic energy + Delta-G solvation = -21557.326061 eV Core-core repulsion = 18408.447507 eV Total energy + Delta-G solvation = -3148.878554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25289 -39.57280 -38.40918 -36.02980 -33.87412 -33.41031 -31.58509 -31.33107 -29.85499 -27.99511 -25.32244 -24.22257 -23.83466 -22.15497 -21.73652 -20.03341 -19.75395 -18.87891 -17.98347 -17.50405 -16.85319 -16.43396 -16.36473 -15.76144 -15.44720 -15.06529 -14.74050 -14.51875 -14.28525 -14.24749 -13.74398 -13.58918 -13.39329 -13.34326 -13.21521 -13.12331 -12.89279 -12.66235 -12.43895 -12.29683 -12.19235 -11.83641 -11.61798 -11.58124 -11.47358 -11.00777 -10.99041 -10.69480 -9.83414 -9.63656 -9.35767 -8.04105 -5.39130 1.38603 1.40751 1.43943 1.47787 1.66624 1.97534 2.46985 3.25245 3.49214 3.55074 3.74545 3.81020 3.87565 3.97610 4.14543 4.19984 4.28890 4.34347 4.43411 4.45660 4.50645 4.59026 4.68402 4.75053 4.79442 4.82900 4.86622 4.94246 5.00102 5.07456 5.13001 5.21909 5.26116 5.27962 5.39109 5.40513 5.53540 5.74781 5.81231 6.10985 6.19335 6.58813 7.03773 7.19201 7.78287 7.96893 9.16834 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042475 B = 0.003083 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.053855 B = 9078.654153 C = 9241.484235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.256 1.256 7 C -0.231 4.231 8 H 0.062 0.938 9 N -0.743 5.743 10 C 0.167 3.833 11 H 0.061 0.939 12 C -0.147 4.147 13 C 0.108 3.892 14 N -0.617 5.617 15 C 0.519 3.481 16 O -0.585 6.585 17 C -0.122 4.122 18 C -0.069 4.069 19 H 0.057 0.943 20 C -0.092 4.092 21 C -0.168 4.168 22 C -0.162 4.162 23 C -0.093 4.093 24 C -0.110 4.110 25 C 0.103 3.897 26 H 0.258 0.742 27 H 0.366 0.634 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.677 -15.447 -4.239 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.180 1.180 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.386 5.386 10 C 0.058 3.942 11 H 0.080 0.920 12 C -0.187 4.187 13 C -0.014 4.014 14 N -0.351 5.351 15 C 0.310 3.690 16 O -0.465 6.465 17 C -0.161 4.161 18 C -0.088 4.088 19 H 0.076 0.924 20 C -0.129 4.129 21 C -0.186 4.186 22 C -0.180 4.180 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.021 4.021 26 H 0.067 0.933 27 H 0.200 0.800 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.745 -15.359 -3.643 28.514 hybrid contribution -0.351 1.462 0.597 1.618 sum 23.394 -13.897 -3.046 27.381 Atomic orbital electron populations 1.69867 1.07066 1.26726 1.59440 1.25458 0.96051 1.01125 1.02538 0.85462 0.78528 0.79885 0.78209 1.20071 1.22467 1.18047 1.18996 0.82111 0.93604 1.41443 0.91983 1.42577 1.02650 1.03387 1.89975 1.21421 0.89745 0.87977 0.95105 0.92049 1.23208 0.97054 1.00139 0.98340 1.22221 0.94466 0.99953 0.84791 1.48602 1.26101 1.36831 1.23561 1.21210 0.79053 0.83689 0.85076 1.90663 1.66970 1.64258 1.24657 1.21800 0.97456 0.96415 1.00414 1.20929 0.95265 0.98187 0.94428 0.92406 1.20565 0.96651 0.98927 0.96741 1.22150 0.96128 1.00580 0.99751 1.22262 0.97404 1.00645 0.97644 1.20511 0.97960 1.02370 0.92152 1.21665 0.95661 0.98593 0.98798 1.22262 0.91143 0.90729 0.98015 0.93273 0.80002 0.90024 0.91018 0.88652 0.88990 0.86641 0.86137 0.92445 0.90813 0.88403 0.87241 0.89359 0.90850 0.90823 0.89646 0.92299 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.94 13.97 21.65 0.30 -61.63 16 2 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 3 Si 0.95 44.87 27.74 68.60 1.90 46.77 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.26 -11.04 6.52 99.48 0.65 -10.39 16 7 C -0.23 -12.73 10.44 84.03 0.88 -11.86 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 9 N -0.74 -33.43 5.05 -316.39 -1.60 -35.03 16 10 C 0.17 5.98 3.72 46.38 0.17 6.15 16 11 H 0.06 2.35 8.09 -2.39 -0.02 2.33 16 12 C -0.15 -4.06 6.64 31.79 0.21 -3.85 16 13 C 0.11 2.13 6.49 86.74 0.56 2.69 16 14 N -0.62 -16.20 3.33 -811.77 -2.70 -18.90 16 15 C 0.52 13.68 7.61 87.66 0.67 14.34 16 16 O -0.58 -20.50 14.35 -3.03 -0.04 -20.55 16 17 C -0.12 -1.96 4.37 29.85 0.13 -1.83 16 18 C -0.07 -1.24 1.87 -10.65 -0.02 -1.26 16 19 H 0.06 1.30 7.93 -2.39 -0.02 1.28 16 20 C -0.09 -1.96 5.05 29.66 0.15 -1.81 16 21 C -0.17 -3.26 9.80 27.04 0.27 -3.00 16 22 C -0.16 -2.59 9.80 27.04 0.27 -2.33 16 23 C -0.09 -1.16 6.12 29.66 0.18 -0.98 16 24 C -0.11 -1.32 5.31 30.74 0.16 -1.15 16 25 C 0.10 3.37 6.55 86.86 0.57 3.94 16 26 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.37 16.00 5.62 -92.71 -0.52 15.48 16 28 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.12 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.61 6.30 -2.39 -0.02 1.60 16 35 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 36 H 0.10 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.11 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 43 H 0.06 2.05 8.00 -2.39 -0.02 2.03 16 Total: -1.00 -71.22 340.33 2.92 -68.30 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.39 Total: 24.97 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 4.66 Total: -3.93 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -3.99 Total: -115.56 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.04 Total: -20.55 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Total: -71.22 2.92 -68.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019244097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.846 kcal (2) G-P(sol) polarization free energy of solvation -71.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds