Wall clock time and date at job start Tue Mar 31 2020 00:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99626 * 2 1 4 4 H 1.48504 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47253 * 299.99796 * 3 2 1 6 6 H 1.48502 * 109.47321 * 60.00154 * 3 2 1 7 7 C 1.38801 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00372 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00036 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00035 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.90833 * 336.25443 * 10 9 7 12 12 C 1.53779 * 113.61248 * 107.50119 * 10 9 7 13 13 C 1.53785 * 87.08074 * 139.98052 * 12 10 9 14 14 H 1.09002 * 113.69079 * 220.01033 * 13 12 10 15 15 N 1.46502 * 113.61445 * 89.11587 * 13 12 10 16 16 C 1.34772 * 119.99892 * 107.50361 * 15 13 12 17 17 O 1.21619 * 120.00284 * 359.97438 * 16 15 13 18 18 C 1.47106 * 119.99886 * 180.02562 * 16 15 13 19 19 C 1.32998 * 119.99977 * 186.98567 * 18 16 15 20 20 C 1.51267 * 120.84782 * 12.17008 * 19 18 16 21 21 C 1.53661 * 108.31317 * 128.62021 * 20 19 18 22 22 C 1.52952 * 109.32514 * 54.85450 * 21 20 19 23 23 C 1.52959 * 109.81904 * 296.27582 * 22 21 20 24 24 C 1.51261 * 120.85114 * 192.44518 * 19 18 16 25 25 C 1.53780 * 113.61298 * 204.99839 * 10 9 7 26 26 H 0.96995 * 119.99910 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99954 * 0.02562 * 9 7 2 28 28 H 1.09000 * 113.61764 * 25.43104 * 12 10 9 29 29 H 1.09001 * 113.61606 * 254.52475 * 12 10 9 30 30 H 0.97004 * 119.99731 * 287.50665 * 15 13 12 31 31 H 1.07996 * 120.00089 * 6.97789 * 18 16 15 32 32 H 1.09005 * 109.62559 * 248.38766 * 20 19 18 33 33 H 1.09004 * 109.63088 * 8.95778 * 20 19 18 34 34 H 1.09004 * 109.62515 * 294.83829 * 21 20 19 35 35 H 1.09001 * 109.41996 * 174.75192 * 21 20 19 36 36 H 1.08997 * 109.41389 * 176.17007 * 22 21 20 37 37 H 1.08999 * 109.41524 * 56.38250 * 22 21 20 38 38 H 1.08999 * 109.48283 * 303.61617 * 23 22 21 39 39 H 1.08997 * 109.49612 * 183.58331 * 23 22 21 40 40 H 1.09003 * 109.62479 * 351.04449 * 24 19 18 41 41 H 1.08999 * 109.62399 * 111.41523 * 24 19 18 42 42 H 1.09003 * 113.61529 * 105.47518 * 25 10 9 43 43 H 1.09004 * 113.61792 * 334.56472 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0663 -3.5646 -0.4038 12 6 1.9993 -4.4020 1.3444 13 6 1.8482 -5.6975 0.5296 14 1 1.1339 -6.4021 0.9557 15 7 3.1258 -6.3236 0.1805 16 6 3.5108 -7.4586 0.7971 17 8 2.7978 -7.9627 1.6436 18 6 4.7940 -8.0869 0.4470 19 6 5.1113 -9.2763 0.9506 20 6 4.0742 -10.1215 1.6564 21 6 4.0961 -11.5283 1.0387 22 6 5.5176 -12.0888 1.1065 23 6 6.4545 -11.2310 0.2545 24 6 6.5200 -9.8156 0.8377 25 6 1.2603 -4.8287 -0.5949 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3880 -0.0002 28 1 1.1210 -4.1569 1.9415 29 1 2.9274 -4.3501 1.9136 30 1 3.6947 -5.9213 -0.4944 31 1 5.4783 -7.5826 -0.2192 32 1 4.3118 -10.1813 2.7186 33 1 3.0877 -9.6773 1.5236 34 1 3.7751 -11.4763 -0.0017 35 1 3.4217 -12.1790 1.5953 36 1 5.5218 -13.1121 0.7312 37 1 5.8607 -12.0821 2.1410 38 1 6.0777 -11.1861 -0.7673 39 1 7.4518 -11.6709 0.2552 40 1 7.1057 -9.1747 0.1786 41 1 6.9812 -9.8443 1.8249 42 1 1.5919 -5.1212 -1.5913 43 1 0.1800 -4.7003 -0.5279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020014872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:18 Heat of formation + Delta-G solvation = -3.011302 kcal Electronic energy + Delta-G solvation = -21131.156344 eV Core-core repulsion = 17983.814606 eV Total energy + Delta-G solvation = -3147.341738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16193 -38.71847 -37.53293 -34.02333 -32.94648 -32.43436 -31.18861 -29.89210 -27.13477 -25.10057 -24.52666 -23.19982 -22.59638 -21.68559 -20.60545 -19.08335 -18.53832 -17.14915 -16.91727 -15.88189 -15.50261 -14.90941 -14.80071 -14.56824 -14.45959 -13.96526 -13.71462 -13.63274 -13.38370 -12.85781 -12.70477 -12.51250 -12.15174 -12.00319 -11.83727 -11.60233 -11.34933 -11.15556 -10.93837 -10.91177 -10.73711 -10.54609 -10.29231 -10.17838 -9.89477 -9.55657 -9.40575 -9.07612 -8.90267 -8.64511 -6.97994 -5.80203 -3.09157 1.27785 3.31927 3.35135 3.41363 3.46990 3.49268 4.43965 4.46256 4.57405 4.63354 4.76160 4.90101 5.02936 5.10089 5.14678 5.20688 5.24653 5.33022 5.37709 5.46384 5.51479 5.59105 5.67929 5.74186 5.78307 5.83516 5.88297 5.93674 6.04445 6.12181 6.14513 6.27116 6.34341 6.38239 6.52931 6.62170 6.67239 6.74830 7.11594 7.67558 7.70916 8.38219 8.39774 9.49534 10.07130 10.41535 11.42221 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042164 B = 0.002735 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.916983 B =10236.897153 C =10629.493587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.095 0.905 15 N -0.702 5.702 16 C 0.548 3.452 17 O -0.543 6.543 18 C -0.230 4.230 19 C -0.023 4.023 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.093 4.093 25 C -0.159 4.159 26 H 0.255 0.745 27 H 0.386 0.614 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.400 0.600 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 -23.140 -0.410 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.091 0.909 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.113 0.887 15 N -0.351 5.351 16 C 0.338 3.662 17 O -0.424 6.424 18 C -0.251 4.251 19 C -0.025 4.025 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.131 4.131 25 C -0.199 4.199 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.235 0.765 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.369 -23.284 0.158 25.912 hybrid contribution 0.537 1.266 -0.337 1.416 sum 11.906 -22.018 -0.179 25.032 Atomic orbital electron populations 1.69671 1.05130 1.25654 1.57526 1.24773 0.95540 0.97810 1.02824 0.86117 0.78777 0.84073 0.77202 1.20547 1.21838 1.21830 1.19338 0.91082 0.84226 1.42827 0.91077 1.42413 1.05781 0.99873 1.86979 1.21619 0.95041 0.85164 0.92739 0.90889 1.24298 1.01943 0.95362 1.00212 1.21809 0.85082 0.94053 0.98064 0.88668 1.45650 1.21898 1.25821 1.41767 1.18536 0.85923 0.80475 0.81262 1.90598 1.55908 1.62491 1.33430 1.22344 0.98141 0.98286 1.06335 1.22682 0.95435 0.92895 0.91517 1.21690 1.01417 0.93788 0.98919 1.21677 0.96459 0.96142 1.01176 1.21567 0.95511 0.98749 1.00291 1.21567 0.99770 0.94463 0.99624 1.20965 0.93061 0.96850 1.02182 1.23857 1.01559 0.97304 0.97211 0.93481 0.78015 0.89643 0.92460 0.76536 0.85643 0.90719 0.85974 0.92066 0.91630 0.92059 0.91883 0.91718 0.91632 0.90808 0.89814 0.91797 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.71 5.40 -52.64 -0.28 -17.99 16 10 C 0.17 3.22 4.36 -67.12 -0.29 2.93 16 11 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 12 C -0.18 -3.16 7.68 -25.92 -0.20 -3.36 16 13 C 0.12 1.78 4.32 -67.11 -0.29 1.49 16 14 H 0.10 1.54 7.46 -51.93 -0.39 1.15 16 15 N -0.70 -9.36 5.26 -54.19 -0.28 -9.65 16 16 C 0.55 7.64 7.62 -12.66 -0.10 7.55 16 17 O -0.54 -9.14 12.82 5.26 0.07 -9.08 16 18 C -0.23 -2.50 9.66 -37.80 -0.36 -2.86 16 19 C -0.02 -0.24 5.38 -100.61 -0.54 -0.78 16 20 C -0.12 -1.31 5.32 -27.26 -0.14 -1.46 16 21 C -0.12 -1.00 5.95 -26.41 -0.16 -1.15 16 22 C -0.12 -0.86 5.81 -26.78 -0.16 -1.01 16 23 C -0.12 -0.77 5.94 -26.64 -0.16 -0.93 16 24 C -0.09 -0.69 6.04 -27.49 -0.17 -0.86 16 25 C -0.16 -2.56 7.58 -25.92 -0.20 -2.75 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 27 H 0.39 10.17 7.92 -40.82 -0.32 9.85 16 28 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.40 4.47 8.68 -40.82 -0.35 4.11 16 31 H 0.13 1.06 7.96 -52.49 -0.42 0.65 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.12 1.65 4.79 -52.86 -0.25 1.40 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.48 7.92 -51.93 -0.41 0.06 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -31.35 345.18 -9.79 -41.14 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.19 Total: 10.98 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -3.01 Total: -10.54 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.16 Total: -54.98 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.35 -9.79 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020014872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.133 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds