Wall clock time and date at job start Tue Mar 31 2020 00:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99626 * 2 1 4 4 H 1.48504 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47253 * 299.99796 * 3 2 1 6 6 H 1.48502 * 109.47321 * 60.00154 * 3 2 1 7 7 C 1.38801 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00372 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00036 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00035 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.90833 * 336.25443 * 10 9 7 12 12 C 1.53779 * 113.61248 * 107.50119 * 10 9 7 13 13 C 1.53785 * 87.08074 * 139.98052 * 12 10 9 14 14 H 1.09002 * 113.69079 * 220.01033 * 13 12 10 15 15 N 1.46502 * 113.61445 * 89.11587 * 13 12 10 16 16 C 1.34772 * 119.99892 * 107.50361 * 15 13 12 17 17 O 1.21619 * 120.00284 * 359.97438 * 16 15 13 18 18 C 1.47106 * 119.99886 * 180.02562 * 16 15 13 19 19 C 1.32998 * 119.99977 * 186.98567 * 18 16 15 20 20 C 1.51267 * 120.84782 * 12.17008 * 19 18 16 21 21 C 1.53661 * 108.31317 * 128.62021 * 20 19 18 22 22 C 1.52952 * 109.32514 * 54.85450 * 21 20 19 23 23 C 1.52959 * 109.81904 * 296.27582 * 22 21 20 24 24 C 1.51261 * 120.85114 * 192.44518 * 19 18 16 25 25 C 1.53780 * 113.61298 * 204.99839 * 10 9 7 26 26 H 0.96995 * 119.99910 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99954 * 0.02562 * 9 7 2 28 28 H 1.09000 * 113.61764 * 25.43104 * 12 10 9 29 29 H 1.09001 * 113.61606 * 254.52475 * 12 10 9 30 30 H 0.97004 * 119.99731 * 287.50665 * 15 13 12 31 31 H 1.07996 * 120.00089 * 6.97789 * 18 16 15 32 32 H 1.09005 * 109.62559 * 248.38766 * 20 19 18 33 33 H 1.09004 * 109.63088 * 8.95778 * 20 19 18 34 34 H 1.09004 * 109.62515 * 294.83829 * 21 20 19 35 35 H 1.09001 * 109.41996 * 174.75192 * 21 20 19 36 36 H 1.08997 * 109.41389 * 176.17007 * 22 21 20 37 37 H 1.08999 * 109.41524 * 56.38250 * 22 21 20 38 38 H 1.08999 * 109.48283 * 303.61617 * 23 22 21 39 39 H 1.08997 * 109.49612 * 183.58331 * 23 22 21 40 40 H 1.09003 * 109.62479 * 351.04449 * 24 19 18 41 41 H 1.08999 * 109.62399 * 111.41523 * 24 19 18 42 42 H 1.09003 * 113.61529 * 105.47518 * 25 10 9 43 43 H 1.09004 * 113.61792 * 334.56472 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0663 -3.5646 -0.4038 12 6 1.9993 -4.4020 1.3444 13 6 1.8482 -5.6975 0.5296 14 1 1.1339 -6.4021 0.9557 15 7 3.1258 -6.3236 0.1805 16 6 3.5108 -7.4586 0.7971 17 8 2.7978 -7.9627 1.6436 18 6 4.7940 -8.0869 0.4470 19 6 5.1113 -9.2763 0.9506 20 6 4.0742 -10.1215 1.6564 21 6 4.0961 -11.5283 1.0387 22 6 5.5176 -12.0888 1.1065 23 6 6.4545 -11.2310 0.2545 24 6 6.5200 -9.8156 0.8377 25 6 1.2603 -4.8287 -0.5949 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3880 -0.0002 28 1 1.1210 -4.1569 1.9415 29 1 2.9274 -4.3501 1.9136 30 1 3.6947 -5.9213 -0.4944 31 1 5.4783 -7.5826 -0.2192 32 1 4.3118 -10.1813 2.7186 33 1 3.0877 -9.6773 1.5236 34 1 3.7751 -11.4763 -0.0017 35 1 3.4217 -12.1790 1.5953 36 1 5.5218 -13.1121 0.7312 37 1 5.8607 -12.0821 2.1410 38 1 6.0777 -11.1861 -0.7673 39 1 7.4518 -11.6709 0.2552 40 1 7.1057 -9.1747 0.1786 41 1 6.9812 -9.8443 1.8249 42 1 1.5919 -5.1212 -1.5913 43 1 0.1800 -4.7003 -0.5279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020014872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:17 Heat of formation + Delta-G solvation = -22.283699 kcal Electronic energy + Delta-G solvation = -21131.992058 eV Core-core repulsion = 17983.814606 eV Total energy + Delta-G solvation = -3148.177452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29637 -39.82660 -38.54378 -35.76833 -34.15277 -33.51083 -31.85439 -31.77475 -28.00450 -26.56275 -26.29770 -24.14903 -23.77758 -22.79362 -21.41727 -20.41662 -19.57358 -19.03246 -18.01973 -17.00440 -16.77883 -16.25291 -15.97171 -15.61582 -15.50363 -15.27726 -15.11675 -14.52080 -14.33216 -14.20035 -13.63625 -13.52781 -13.40726 -13.32760 -13.16986 -12.84941 -12.77487 -12.55023 -12.11197 -11.99934 -11.85220 -11.82084 -11.70623 -11.59342 -11.19522 -11.16662 -10.85837 -10.44451 -9.97754 -9.78315 -8.99342 -7.95317 -5.23980 0.40714 1.47637 1.48404 1.58267 2.25312 2.31207 2.56217 3.36327 3.69614 3.72921 3.81010 3.85584 3.95894 4.06166 4.08014 4.22255 4.32045 4.32677 4.35179 4.48750 4.52405 4.66033 4.72911 4.81531 4.90479 4.91842 5.01823 5.03737 5.13215 5.15646 5.19176 5.20259 5.22458 5.26435 5.39631 5.46331 5.51053 5.61128 5.72762 5.80007 6.26928 6.66430 7.32891 7.33802 8.09312 8.31959 9.28210 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042164 B = 0.002735 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.916983 B =10236.897153 C =10629.493587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.728 5.728 10 C 0.154 3.846 11 H 0.083 0.917 12 C -0.173 4.173 13 C 0.135 3.865 14 H 0.089 0.911 15 N -0.696 5.696 16 C 0.541 3.459 17 O -0.579 6.579 18 C -0.243 4.243 19 C -0.017 4.017 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.092 4.092 25 C -0.143 4.143 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.413 0.587 31 H 0.154 0.846 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.398 -24.485 -1.248 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.365 5.365 10 C 0.044 3.956 11 H 0.101 0.899 12 C -0.215 4.215 13 C 0.028 3.972 14 H 0.107 0.893 15 N -0.346 5.346 16 C 0.334 3.666 17 O -0.462 6.462 18 C -0.263 4.263 19 C -0.019 4.019 20 C -0.162 4.162 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.152 4.152 24 C -0.128 4.128 25 C -0.182 4.182 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.250 0.750 31 H 0.171 0.829 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.056 -24.672 -0.697 28.404 hybrid contribution -0.272 1.549 -0.020 1.573 sum 13.784 -23.124 -0.717 26.930 Atomic orbital electron populations 1.69824 1.06657 1.25992 1.59646 1.25589 0.96392 1.01207 1.03839 0.85082 0.78337 0.79850 0.76550 1.18850 1.22000 1.22362 1.19743 0.91585 0.85315 1.40765 0.90358 1.42611 1.05448 1.01077 1.87356 1.21946 0.95617 0.83971 0.94040 0.89909 1.24152 1.01061 0.96821 0.99458 1.21472 0.86039 0.92859 0.96837 0.89335 1.45556 1.21235 1.25736 1.42050 1.19131 0.86660 0.80227 0.80620 1.90609 1.57199 1.63379 1.35005 1.22399 0.97096 0.98883 1.07936 1.22986 0.96598 0.92381 0.89896 1.21611 1.00263 0.95298 0.99074 1.21652 0.98009 0.94820 1.00677 1.21569 0.94233 0.99435 1.00743 1.21579 1.00616 0.93779 0.99254 1.21045 0.91109 0.97565 1.03126 1.23668 1.00902 0.95208 0.98424 0.94051 0.79398 0.91296 0.92783 0.75009 0.82856 0.91187 0.88918 0.92403 0.91463 0.90823 0.91650 0.91811 0.89771 0.89227 0.89028 0.89567 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.54 13.06 21.65 0.28 -59.25 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 3 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.24 -13.32 9.97 84.03 0.84 -12.48 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.73 -36.34 5.40 -320.45 -1.73 -38.07 16 10 C 0.15 5.85 4.36 45.52 0.20 6.05 16 11 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 12 C -0.17 -6.20 7.68 31.12 0.24 -5.96 16 13 C 0.13 4.05 4.32 45.52 0.20 4.25 16 14 H 0.09 2.86 7.46 -2.39 -0.02 2.84 16 15 N -0.70 -17.56 5.26 -443.62 -2.33 -19.89 16 16 C 0.54 14.66 7.62 86.57 0.66 15.32 16 17 O -0.58 -19.71 12.82 -4.09 -0.05 -19.76 16 18 C -0.24 -4.80 9.66 23.43 0.23 -4.58 16 19 C -0.02 -0.31 5.38 -17.26 -0.09 -0.40 16 20 C -0.13 -2.66 5.32 30.25 0.16 -2.50 16 21 C -0.11 -1.82 5.95 30.80 0.18 -1.63 16 22 C -0.12 -1.41 5.81 30.56 0.18 -1.23 16 23 C -0.11 -1.15 5.94 30.66 0.18 -0.97 16 24 C -0.09 -1.08 6.04 30.10 0.18 -0.89 16 25 C -0.14 -4.40 7.58 31.12 0.24 -4.17 16 26 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.37 20.15 7.92 -92.71 -0.73 19.41 16 28 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.41 8.27 8.68 -92.71 -0.81 7.46 16 31 H 0.15 2.11 7.96 -2.91 -0.02 2.08 16 32 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.09 2.58 4.79 -17.13 -0.08 2.50 16 34 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.81 7.92 -2.39 -0.02 0.79 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.09 2.79 8.12 -2.39 -0.02 2.77 16 Total: -1.00 -68.13 345.18 1.44 -66.69 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.61 Total: 35.49 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 3.85 Total: -13.20 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -3.78 Total: -117.21 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.13 1.44 -66.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020014872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.409 kcal (2) G-P(sol) polarization free energy of solvation -68.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds