Wall clock time and date at job start Mon Mar 30 2020 23:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99847 * 2 1 4 4 H 1.48503 * 109.47101 * 239.99744 * 3 2 1 5 5 H 1.48500 * 109.47584 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47253 * 120.00197 * 3 2 1 7 7 C 1.38807 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99700 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00090 * 180.02562 * 9 7 2 11 11 H 1.09008 * 112.90718 * 336.24776 * 10 9 7 12 12 C 1.53780 * 113.61708 * 107.49979 * 10 9 7 13 13 C 1.53784 * 87.08134 * 139.97953 * 12 10 9 14 14 H 1.08996 * 113.68867 * 220.00775 * 13 12 10 15 15 N 1.46502 * 113.61414 * 89.11557 * 13 12 10 16 16 C 1.34773 * 119.99671 * 107.50144 * 15 13 12 17 17 O 1.21280 * 120.00452 * 359.97438 * 16 15 13 18 18 C 1.50701 * 120.00095 * 180.02562 * 16 15 13 19 19 C 1.50696 * 109.47559 * 180.02562 * 18 16 15 20 20 C 1.29445 * 117.96534 * 94.97754 * 19 18 16 21 21 C 1.50062 * 124.07609 * 180.49161 * 20 19 18 22 22 C 1.53020 * 110.14863 * 342.86851 * 21 20 19 23 23 C 1.53392 * 108.43767 * 49.43866 * 22 21 20 24 24 C 1.50072 * 117.96000 * 274.99948 * 19 18 16 25 25 C 1.53779 * 87.07939 * 334.56692 * 13 12 10 26 26 H 0.97008 * 119.99825 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99875 * 359.97438 * 9 7 2 28 28 H 1.09001 * 113.61586 * 25.43070 * 12 10 9 29 29 H 1.09001 * 113.61482 * 254.52796 * 12 10 9 30 30 H 0.96995 * 119.99942 * 287.50464 * 15 13 12 31 31 H 1.09006 * 109.46995 * 59.99844 * 18 16 15 32 32 H 1.09002 * 109.47377 * 300.00492 * 18 16 15 33 33 H 1.08000 * 117.95950 * 0.51665 * 20 19 18 34 34 H 1.09002 * 109.35957 * 222.65996 * 21 20 19 35 35 H 1.09000 * 109.24676 * 103.00622 * 21 20 19 36 36 H 1.08999 * 109.64487 * 289.74759 * 22 21 20 37 37 H 1.09002 * 109.81509 * 169.22112 * 22 21 20 38 38 H 1.09003 * 109.64323 * 172.88171 * 23 22 21 39 39 H 1.08994 * 109.81816 * 52.35184 * 23 22 21 40 40 H 1.09000 * 109.35750 * 42.63871 * 24 19 18 41 41 H 1.09002 * 109.35438 * 283.05308 * 24 19 18 42 42 H 1.09006 * 113.60930 * 139.98016 * 25 13 12 43 43 H 1.08994 * 113.61572 * 270.88174 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 1 3.0664 -3.5645 -0.4052 12 6 1.9981 -4.4027 1.3418 13 6 1.8475 -5.6978 0.5263 14 1 1.1330 -6.4025 0.9516 15 7 3.1254 -6.3238 0.1778 16 6 3.5099 -7.4590 0.7942 17 8 2.7982 -7.9621 1.6376 18 6 4.8246 -8.1027 0.4362 19 6 5.0150 -9.3491 1.2615 20 6 4.6591 -10.4806 0.7431 21 6 4.7774 -11.8014 1.4455 22 6 5.7369 -11.6836 2.6316 23 6 5.3335 -10.4587 3.4622 24 6 5.6050 -9.2013 2.6334 25 6 1.2605 -4.8284 -0.5982 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0016 28 1 1.1194 -4.1578 1.9385 29 1 2.9258 -4.3510 1.9117 30 1 3.6947 -5.9212 -0.4964 31 1 5.6376 -7.4051 0.6380 32 1 4.8249 -8.3644 -0.6220 33 1 4.2520 -10.4736 -0.2572 34 1 5.1552 -12.5490 0.7480 35 1 3.7946 -12.1066 1.8047 36 1 6.7566 -11.5596 2.2671 37 1 5.6746 -12.5806 3.2477 38 1 5.9223 -10.4275 4.3789 39 1 4.2733 -10.5127 3.7094 40 1 5.1578 -8.3390 3.1280 41 1 6.6811 -9.0492 2.5494 42 1 1.5928 -5.1204 -1.5944 43 1 0.1802 -4.6999 -0.5319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020026992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:42 Heat of formation + Delta-G solvation = -10.495809 kcal Electronic energy + Delta-G solvation = -21151.760225 eV Core-core repulsion = 18004.093935 eV Total energy + Delta-G solvation = -3147.666291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13363 -38.78941 -37.62618 -34.00529 -33.12373 -32.40846 -30.90723 -29.91551 -27.57529 -25.11860 -24.50140 -23.44828 -22.47067 -21.83721 -20.56083 -18.94087 -17.72173 -17.25781 -16.91605 -16.10555 -15.55475 -15.17434 -14.90959 -14.59386 -14.07115 -13.97458 -13.76104 -13.50958 -13.42245 -12.80806 -12.65932 -12.39230 -12.30514 -12.19076 -11.85872 -11.74696 -11.60415 -10.97338 -10.89878 -10.78766 -10.63928 -10.40368 -10.31122 -10.25820 -9.93135 -9.78984 -9.56000 -8.91154 -8.87891 -8.74541 -6.99366 -5.80877 -3.10005 2.05788 2.73018 3.38117 3.41339 3.45903 3.46985 4.40132 4.51313 4.56551 4.73648 4.86972 4.97203 5.02566 5.10339 5.18351 5.21944 5.28694 5.40255 5.41162 5.45150 5.45873 5.50195 5.63812 5.74663 5.78501 5.86766 5.90173 5.93602 5.99544 6.15414 6.16950 6.25402 6.32605 6.49266 6.53235 6.63837 6.70727 6.86803 7.09084 7.64846 7.65801 8.35501 8.37557 9.48594 10.06157 10.40527 11.41375 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040734 B = 0.002750 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.226322 B =10180.321132 C =10436.146675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.094 0.906 15 N -0.710 5.710 16 C 0.514 3.486 17 O -0.536 6.536 18 C -0.112 4.112 19 C -0.096 4.096 20 C -0.151 4.151 21 C -0.087 4.087 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.080 4.080 25 C -0.160 4.160 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.400 0.600 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.723 -22.002 1.029 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.055 3.945 11 H 0.091 0.909 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.112 0.888 15 N -0.360 5.360 16 C 0.300 3.700 17 O -0.413 6.413 18 C -0.152 4.152 19 C -0.097 4.097 20 C -0.169 4.169 21 C -0.124 4.124 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.117 4.117 25 C -0.199 4.199 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.234 0.766 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.298 -22.160 1.617 24.927 hybrid contribution 0.332 1.286 -0.403 1.388 sum 11.630 -20.874 1.214 23.926 Atomic orbital electron populations 1.69651 1.05144 1.25910 1.57278 1.24772 0.95535 0.97812 1.02738 0.86260 0.78543 0.83466 0.77853 1.21230 1.21650 1.21222 1.19244 0.91015 0.84246 1.43202 0.91184 1.42395 1.05772 0.99851 1.86996 1.21611 0.95030 0.85165 0.92704 0.90889 1.24299 1.01909 0.95393 1.00223 1.21800 0.85116 0.94012 0.98056 0.88785 1.45754 1.22057 1.25844 1.42378 1.20542 0.87688 0.80335 0.81406 1.90696 1.55074 1.63199 1.32322 1.20878 0.96151 0.97083 1.01061 1.20278 1.00353 0.93186 0.95868 1.21839 1.00885 0.94120 1.00044 1.20392 0.99950 0.95233 0.96793 1.21596 0.99204 0.98150 0.96768 1.21569 1.01995 0.94277 0.97774 1.20347 0.99853 0.98855 0.92667 1.23857 1.01571 0.97329 0.97189 0.93362 0.78009 0.89675 0.92497 0.76622 0.88350 0.88549 0.88190 0.91364 0.90931 0.91902 0.91910 0.91881 0.91433 0.90813 0.91216 0.91815 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.71 -17.62 5.40 -52.64 -0.28 -17.90 16 10 C 0.17 3.20 4.35 -67.12 -0.29 2.91 16 11 H 0.07 1.35 8.10 -51.92 -0.42 0.93 16 12 C -0.18 -3.13 7.68 -25.92 -0.20 -3.33 16 13 C 0.12 1.77 4.32 -67.12 -0.29 1.48 16 14 H 0.09 1.54 7.46 -51.93 -0.39 1.15 16 15 N -0.71 -9.06 5.26 -53.02 -0.28 -9.34 16 16 C 0.51 6.86 7.82 -10.99 -0.09 6.78 16 17 O -0.54 -9.29 15.63 5.56 0.09 -9.20 16 18 C -0.11 -1.07 5.71 -29.04 -0.17 -1.24 16 19 C -0.10 -1.00 4.33 -100.94 -0.44 -1.44 16 20 C -0.15 -1.49 9.37 -35.90 -0.34 -1.83 16 21 C -0.09 -0.73 6.12 -28.18 -0.17 -0.90 16 22 C -0.12 -0.94 6.01 -26.52 -0.16 -1.10 16 23 C -0.12 -1.08 6.01 -26.51 -0.16 -1.24 16 24 C -0.08 -0.79 5.80 -28.17 -0.16 -0.96 16 25 C -0.16 -2.54 7.58 -25.92 -0.20 -2.73 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.39 10.15 7.92 -40.82 -0.32 9.82 16 28 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.40 4.14 8.70 -40.82 -0.36 3.79 16 31 H 0.10 0.78 8.12 -51.93 -0.42 0.35 16 32 H 0.10 0.73 7.79 -51.93 -0.40 0.33 16 33 H 0.10 0.93 7.74 -52.49 -0.41 0.52 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.49 8.12 -51.93 -0.42 1.07 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -32.09 350.43 -9.73 -41.82 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.34 Total: 10.39 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.90 Total: -10.95 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.16 Total: -54.50 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.09 -9.73 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020026992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.325 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds