Wall clock time and date at job start Mon Mar 30 2020 23:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99847 * 2 1 4 4 H 1.48503 * 109.47101 * 239.99744 * 3 2 1 5 5 H 1.48500 * 109.47584 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47253 * 120.00197 * 3 2 1 7 7 C 1.38807 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99700 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00090 * 180.02562 * 9 7 2 11 11 H 1.09008 * 112.90718 * 336.24776 * 10 9 7 12 12 C 1.53780 * 113.61708 * 107.49979 * 10 9 7 13 13 C 1.53784 * 87.08134 * 139.97953 * 12 10 9 14 14 H 1.08996 * 113.68867 * 220.00775 * 13 12 10 15 15 N 1.46502 * 113.61414 * 89.11557 * 13 12 10 16 16 C 1.34773 * 119.99671 * 107.50144 * 15 13 12 17 17 O 1.21280 * 120.00452 * 359.97438 * 16 15 13 18 18 C 1.50701 * 120.00095 * 180.02562 * 16 15 13 19 19 C 1.50696 * 109.47559 * 180.02562 * 18 16 15 20 20 C 1.29445 * 117.96534 * 94.97754 * 19 18 16 21 21 C 1.50062 * 124.07609 * 180.49161 * 20 19 18 22 22 C 1.53020 * 110.14863 * 342.86851 * 21 20 19 23 23 C 1.53392 * 108.43767 * 49.43866 * 22 21 20 24 24 C 1.50072 * 117.96000 * 274.99948 * 19 18 16 25 25 C 1.53779 * 87.07939 * 334.56692 * 13 12 10 26 26 H 0.97008 * 119.99825 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99875 * 359.97438 * 9 7 2 28 28 H 1.09001 * 113.61586 * 25.43070 * 12 10 9 29 29 H 1.09001 * 113.61482 * 254.52796 * 12 10 9 30 30 H 0.96995 * 119.99942 * 287.50464 * 15 13 12 31 31 H 1.09006 * 109.46995 * 59.99844 * 18 16 15 32 32 H 1.09002 * 109.47377 * 300.00492 * 18 16 15 33 33 H 1.08000 * 117.95950 * 0.51665 * 20 19 18 34 34 H 1.09002 * 109.35957 * 222.65996 * 21 20 19 35 35 H 1.09000 * 109.24676 * 103.00622 * 21 20 19 36 36 H 1.08999 * 109.64487 * 289.74759 * 22 21 20 37 37 H 1.09002 * 109.81509 * 169.22112 * 22 21 20 38 38 H 1.09003 * 109.64323 * 172.88171 * 23 22 21 39 39 H 1.08994 * 109.81816 * 52.35184 * 23 22 21 40 40 H 1.09000 * 109.35750 * 42.63871 * 24 19 18 41 41 H 1.09002 * 109.35438 * 283.05308 * 24 19 18 42 42 H 1.09006 * 113.60930 * 139.98016 * 25 13 12 43 43 H 1.08994 * 113.61572 * 270.88174 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 1 3.0664 -3.5645 -0.4052 12 6 1.9981 -4.4027 1.3418 13 6 1.8475 -5.6978 0.5263 14 1 1.1330 -6.4025 0.9516 15 7 3.1254 -6.3238 0.1778 16 6 3.5099 -7.4590 0.7942 17 8 2.7982 -7.9621 1.6376 18 6 4.8246 -8.1027 0.4362 19 6 5.0150 -9.3491 1.2615 20 6 4.6591 -10.4806 0.7431 21 6 4.7774 -11.8014 1.4455 22 6 5.7369 -11.6836 2.6316 23 6 5.3335 -10.4587 3.4622 24 6 5.6050 -9.2013 2.6334 25 6 1.2605 -4.8284 -0.5982 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0016 28 1 1.1194 -4.1578 1.9385 29 1 2.9258 -4.3510 1.9117 30 1 3.6947 -5.9212 -0.4964 31 1 5.6376 -7.4051 0.6380 32 1 4.8249 -8.3644 -0.6220 33 1 4.2520 -10.4736 -0.2572 34 1 5.1552 -12.5490 0.7480 35 1 3.7946 -12.1066 1.8047 36 1 6.7566 -11.5596 2.2671 37 1 5.6746 -12.5806 3.2477 38 1 5.9223 -10.4275 4.3789 39 1 4.2733 -10.5127 3.7094 40 1 5.1578 -8.3390 3.1280 41 1 6.6811 -9.0492 2.5494 42 1 1.5928 -5.1204 -1.5944 43 1 0.1802 -4.6999 -0.5319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020026992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:41 Heat of formation + Delta-G solvation = -30.366888 kcal Electronic energy + Delta-G solvation = -21152.621900 eV Core-core repulsion = 18004.093935 eV Total energy + Delta-G solvation = -3148.527965 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25945 -39.82527 -38.73150 -35.75028 -34.21357 -33.58808 -31.78735 -31.60269 -28.44241 -26.56401 -26.29485 -24.23715 -23.87363 -22.80342 -21.56643 -20.36714 -19.16097 -18.46082 -18.07263 -17.15896 -16.82032 -16.34037 -16.19439 -15.76597 -15.52763 -15.23175 -14.79910 -14.55557 -14.38970 -14.20577 -13.65516 -13.46460 -13.39642 -13.32045 -13.09903 -12.97725 -12.78255 -12.57766 -12.54434 -12.21331 -11.84434 -11.73777 -11.65248 -11.32291 -11.20321 -11.08515 -10.90868 -10.83866 -9.98819 -9.63391 -8.99469 -7.94861 -5.23637 1.28149 1.47787 1.50543 1.56610 1.68583 2.34222 2.56627 3.36434 3.67425 3.70894 3.80893 3.85287 3.95948 4.01443 4.08285 4.29507 4.32406 4.32793 4.37515 4.49439 4.59592 4.70096 4.72590 4.77444 4.78116 4.90080 4.92634 5.01761 5.04829 5.11299 5.12779 5.19467 5.21290 5.27892 5.34003 5.48016 5.50512 5.72805 5.77662 6.13116 6.26934 6.63525 7.32686 7.33168 8.09693 8.32092 9.28256 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040734 B = 0.002750 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.226322 B =10180.321132 C =10436.146675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.728 5.728 10 C 0.155 3.845 11 H 0.085 0.915 12 C -0.173 4.173 13 C 0.134 3.866 14 H 0.085 0.915 15 N -0.701 5.701 16 C 0.512 3.488 17 O -0.581 6.581 18 C -0.104 4.104 19 C -0.115 4.115 20 C -0.155 4.155 21 C -0.091 4.091 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.082 4.082 25 C -0.143 4.143 26 H 0.251 0.749 27 H 0.373 0.627 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.415 0.585 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.031 -23.161 0.049 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.045 3.955 11 H 0.103 0.897 12 C -0.216 4.216 13 C 0.028 3.972 14 H 0.103 0.897 15 N -0.352 5.352 16 C 0.301 3.699 17 O -0.460 6.460 18 C -0.144 4.144 19 C -0.115 4.115 20 C -0.173 4.173 21 C -0.127 4.127 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.119 4.119 25 C -0.182 4.182 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.252 0.748 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.672 -23.360 0.615 27.073 hybrid contribution -0.366 1.542 -0.066 1.587 sum 13.306 -21.817 0.549 25.561 Atomic orbital electron populations 1.69814 1.06677 1.26140 1.59482 1.25594 0.96376 1.01234 1.03774 0.85217 0.77185 0.79165 0.78226 1.20060 1.22410 1.20574 1.19679 0.91603 0.85324 1.41074 0.90303 1.42602 1.05430 1.01097 1.87380 1.21949 0.95682 0.83918 0.93962 0.89704 1.24153 1.01025 0.96875 0.99504 1.21448 0.86199 0.92768 0.96812 0.89729 1.45660 1.21249 1.25719 1.42604 1.21262 0.88501 0.79847 0.80326 1.90685 1.56677 1.64354 1.34277 1.20917 0.94140 0.96907 1.02393 1.20459 1.01126 0.93735 0.96226 1.22088 1.00076 0.94663 1.00453 1.20462 0.99866 0.95058 0.97359 1.21587 0.99405 0.97863 0.96460 1.21578 1.00820 0.94862 0.98545 1.20364 1.00703 0.98253 0.92546 1.23666 1.00832 0.95261 0.98480 0.94051 0.79449 0.91534 0.92665 0.74827 0.86241 0.85921 0.87657 0.89633 0.91687 0.90989 0.90749 0.90789 0.93640 0.92983 0.89519 0.89422 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 3 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.24 -13.37 9.97 84.03 0.84 -12.53 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -36.06 5.40 -320.45 -1.73 -37.79 16 10 C 0.15 5.77 4.35 45.52 0.20 5.97 16 11 H 0.09 2.96 8.10 -2.38 -0.02 2.94 16 12 C -0.17 -6.12 7.68 31.12 0.24 -5.88 16 13 C 0.13 3.96 4.32 45.52 0.20 4.15 16 14 H 0.08 2.74 7.46 -2.39 -0.02 2.72 16 15 N -0.70 -16.38 5.26 -440.04 -2.32 -18.70 16 16 C 0.51 12.84 7.82 87.66 0.69 13.52 16 17 O -0.58 -19.92 15.63 -3.03 -0.05 -19.96 16 18 C -0.10 -1.72 5.71 29.10 0.17 -1.55 16 19 C -0.12 -2.19 4.33 -15.10 -0.07 -2.26 16 20 C -0.15 -2.78 9.37 27.03 0.25 -2.53 16 21 C -0.09 -1.37 6.12 29.66 0.18 -1.19 16 22 C -0.12 -1.60 6.01 30.73 0.18 -1.41 16 23 C -0.12 -2.09 6.01 30.73 0.18 -1.91 16 24 C -0.08 -1.52 5.80 29.66 0.17 -1.35 16 25 C -0.14 -4.33 7.58 31.12 0.24 -4.09 16 26 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 27 H 0.37 20.04 7.92 -92.71 -0.73 19.30 16 28 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.41 7.28 8.70 -92.71 -0.81 6.48 16 31 H 0.12 1.49 8.12 -2.38 -0.02 1.47 16 32 H 0.12 1.40 7.79 -2.39 -0.02 1.38 16 33 H 0.11 1.73 7.74 -2.91 -0.02 1.71 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 0.97 8.13 -2.39 -0.02 0.95 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.08 2.70 8.12 -2.39 -0.02 2.69 16 Total: -1.00 -69.69 350.43 1.61 -68.08 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.54 Total: 34.76 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 3.94 Total: -15.03 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -3.76 Total: -115.53 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.69 1.61 -68.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020026992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.714 kcal (2) G-P(sol) polarization free energy of solvation -69.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds