Wall clock time and date at job start Tue Mar 31 2020 00:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48504 * 109.47317 * 270.00112 * 3 2 1 5 5 H 1.48500 * 109.47095 * 30.00037 * 3 2 1 6 6 H 1.48501 * 109.47124 * 150.00024 * 3 2 1 7 7 C 1.38815 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.84641 * 23.80011 * 10 9 7 12 12 C 1.53785 * 113.61608 * 154.99520 * 10 9 7 13 13 C 1.53781 * 87.07861 * 89.20099 * 12 10 9 14 14 H 1.09001 * 113.61030 * 270.79867 * 13 12 10 15 15 N 1.46499 * 113.61433 * 139.98479 * 13 12 10 16 16 C 1.34777 * 120.00199 * 155.00089 * 15 13 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 13 19 19 H 1.08999 * 115.57592 * 34.13570 * 18 16 15 20 20 C 1.52305 * 117.53682 * 179.97438 * 18 16 15 21 21 H 1.08998 * 115.91384 * 1.58543 * 20 18 16 22 22 C 1.52072 * 119.83702 * 217.19229 * 20 18 16 23 23 C 1.52865 * 110.51420 * 310.45007 * 22 20 18 24 24 C 1.53292 * 108.59287 * 305.10860 * 23 22 20 25 25 C 1.52872 * 108.58203 * 74.44537 * 24 23 22 26 26 C 1.52298 * 60.58725 * 107.41047 * 20 18 16 27 27 H 1.09006 * 117.29894 * 252.90023 * 26 20 18 28 28 C 1.53780 * 113.69107 * 252.53348 * 10 9 7 29 29 H 0.97000 * 120.00319 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99842 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.61007 * 334.65221 * 12 10 9 32 32 H 1.08990 * 113.69025 * 203.76147 * 12 10 9 33 33 H 0.97000 * 119.99484 * 334.99186 * 15 13 12 34 34 H 1.09006 * 109.26386 * 70.72072 * 22 20 18 35 35 H 1.08999 * 109.26875 * 190.21511 * 22 20 18 36 36 H 1.08996 * 109.62133 * 64.84373 * 23 22 20 37 37 H 1.09011 * 109.61314 * 185.19677 * 23 22 20 38 38 H 1.08999 * 109.62152 * 194.17386 * 24 23 22 39 39 H 1.09003 * 109.62191 * 314.71624 * 24 23 22 40 40 H 1.09003 * 109.35746 * 65.68859 * 25 24 23 41 41 H 1.09004 * 109.36129 * 185.26925 * 25 24 23 42 42 H 1.08993 * 113.61656 * 156.32367 * 28 10 9 43 43 H 1.09004 * 113.61428 * 25.41668 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 1 3.0657 -3.5641 0.4027 12 6 1.2604 -4.8294 0.5918 13 6 0.7223 -5.0798 -0.8269 14 1 -0.1893 -4.5263 -1.0521 15 7 0.6269 -6.4993 -1.1762 16 6 -0.2511 -6.9048 -2.1149 17 8 -0.9625 -6.0945 -2.6701 18 6 -0.3536 -8.3659 -2.4698 19 1 -0.1904 -9.0624 -1.6474 20 6 -1.3647 -8.7619 -3.5377 21 1 -1.9262 -7.9437 -3.9888 22 6 -2.1401 -10.0628 -3.4002 23 6 -1.1911 -11.2229 -3.0996 24 6 -0.1123 -11.2663 -4.1877 25 6 0.8697 -10.1198 -3.9462 26 6 0.1218 -8.7925 -3.8672 27 1 0.5047 -8.0107 -4.5233 28 6 2.0011 -4.4020 -1.3467 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0016 31 1 0.4931 -4.5200 1.3015 32 1 1.8861 -5.6374 0.9705 33 1 1.1958 -7.1474 -0.7319 34 1 -2.8608 -9.9678 -2.5879 35 1 -2.6713 -10.2650 -4.3302 36 1 -0.7237 -11.0708 -2.1267 37 1 -1.7483 -12.1598 -3.0953 38 1 0.4173 -12.2178 -4.1403 39 1 -0.5758 -11.1509 -5.1675 40 1 1.4008 -10.2902 -3.0097 41 1 1.5884 -10.0811 -4.7648 42 1 2.8305 -5.0927 -1.4985 43 1 1.8318 -3.7478 -2.2019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020051800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:32 Heat of formation + Delta-G solvation = -0.170665 kcal Electronic energy + Delta-G solvation = -21363.206678 eV Core-core repulsion = 18215.988120 eV Total energy + Delta-G solvation = -3147.218559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54155 -39.07850 -37.59967 -33.97865 -33.31096 -32.52559 -31.07292 -29.70721 -26.06885 -25.08764 -24.25724 -23.09528 -22.80086 -21.77407 -20.16128 -18.94757 -18.35017 -17.46658 -17.29095 -15.95414 -15.55017 -14.90109 -14.83554 -14.40213 -14.23822 -14.10336 -13.96627 -13.56942 -13.09452 -12.67381 -12.60453 -12.43121 -12.10252 -11.98464 -11.95593 -11.64017 -11.42107 -11.16326 -10.86527 -10.79586 -10.56738 -10.24067 -10.15507 -10.12587 -9.97225 -9.83860 -9.69741 -9.42660 -8.90128 -8.64288 -6.99475 -5.78064 -3.08196 2.59924 3.31376 3.43920 3.48582 3.50618 3.66855 4.40476 4.45570 4.46750 4.57137 4.70401 4.80616 4.88865 5.05187 5.06396 5.14633 5.23383 5.28491 5.30499 5.40818 5.41924 5.49254 5.63007 5.65854 5.72122 5.81594 5.89384 5.94478 5.97290 6.01416 6.04135 6.10969 6.15317 6.25657 6.40516 6.65663 6.75202 6.81594 7.06436 7.69774 7.75187 8.40097 8.45484 9.50751 10.07324 10.41334 11.44162 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041829 B = 0.002900 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.227808 B = 9652.063540 C = 9812.061799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.164 4.164 13 C 0.125 3.875 14 H 0.112 0.888 15 N -0.714 5.714 16 C 0.537 3.463 17 O -0.540 6.540 18 C -0.189 4.189 19 H 0.120 0.880 20 C -0.107 4.107 21 H 0.113 0.887 22 C -0.089 4.089 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.091 4.091 26 C -0.119 4.119 27 H 0.107 0.893 28 C -0.184 4.184 29 H 0.257 0.743 30 H 0.386 0.614 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -25.197 -5.199 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.086 0.914 12 C -0.204 4.204 13 C 0.021 3.979 14 H 0.130 0.870 15 N -0.363 5.363 16 C 0.323 3.677 17 O -0.417 6.417 18 C -0.210 4.210 19 H 0.138 0.862 20 C -0.125 4.125 21 H 0.131 0.869 22 C -0.126 4.126 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.128 4.128 26 C -0.138 4.138 27 H 0.125 0.875 28 C -0.226 4.226 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.229 0.771 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.250 -24.396 -5.561 25.023 hybrid contribution 0.435 0.660 0.249 0.829 sum 0.685 -23.736 -5.313 24.332 Atomic orbital electron populations 1.69670 1.05157 1.25859 1.57100 1.24791 0.95542 0.97852 1.02632 0.86158 0.78613 0.83651 0.77553 1.21642 1.21734 1.20686 1.19271 0.91098 0.83899 1.43346 0.90928 1.42202 1.05780 0.99414 1.87016 1.20905 0.95219 0.85422 0.92590 0.91408 1.23894 1.00750 0.99932 0.95859 1.22635 0.99699 0.79664 0.95892 0.86975 1.46044 1.39940 1.09786 1.40536 1.19714 0.79651 0.89006 0.79354 1.90716 1.43442 1.55084 1.52498 1.22504 1.09145 0.94709 0.94655 0.86175 1.21915 0.91291 0.99524 0.99812 0.86868 1.20885 0.97402 0.92140 1.02216 1.21635 0.97232 0.98229 0.99036 1.21567 0.96908 0.97898 0.99287 1.21065 0.97265 0.92229 1.02260 1.22329 0.96993 0.99051 0.95400 0.87508 1.24311 0.96294 0.99735 1.02297 0.93360 0.77972 0.90904 0.90355 0.77068 0.91260 0.91030 0.91851 0.91708 0.91854 0.91549 0.91424 0.91262 0.91300 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.87 9.97 -15.06 -0.15 -7.02 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -17.96 5.31 -52.64 -0.28 -18.24 16 10 C 0.17 3.41 4.56 -67.12 -0.31 3.11 16 11 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 12 C -0.16 -2.66 7.58 -25.92 -0.20 -2.85 16 13 C 0.12 2.14 4.12 -67.12 -0.28 1.86 16 14 H 0.11 2.33 7.46 -51.93 -0.39 1.94 16 15 N -0.71 -9.83 5.35 -53.02 -0.28 -10.11 16 16 C 0.54 8.11 7.62 -10.98 -0.08 8.02 16 17 O -0.54 -10.73 15.79 5.55 0.09 -10.64 16 18 C -0.19 -2.05 5.31 -91.79 -0.49 -2.54 16 19 H 0.12 1.05 7.26 -51.93 -0.38 0.68 16 20 C -0.11 -1.12 5.58 -91.81 -0.51 -1.63 16 21 H 0.11 1.43 7.55 -51.93 -0.39 1.04 16 22 C -0.09 -0.71 5.93 -27.27 -0.16 -0.87 16 23 C -0.12 -0.82 5.70 -26.65 -0.15 -0.97 16 24 C -0.12 -0.76 5.93 -26.65 -0.16 -0.92 16 25 C -0.09 -0.66 5.82 -27.03 -0.16 -0.82 16 26 C -0.12 -1.16 5.90 -90.87 -0.54 -1.70 16 27 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 28 C -0.18 -3.32 7.68 -25.92 -0.20 -3.52 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.39 10.52 7.90 -40.82 -0.32 10.20 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.40 4.10 8.73 -40.82 -0.36 3.74 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.42 7.11 -51.93 -0.37 0.05 16 37 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 40 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -32.62 345.35 -10.28 -42.90 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -7.23 Total: 11.46 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.47 Total: -10.28 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.16 Total: -56.18 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.62 -10.28 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020051800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.729 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds