Wall clock time and date at job start Tue Mar 31 2020 00:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48504 * 109.47317 * 270.00112 * 3 2 1 5 5 H 1.48500 * 109.47095 * 30.00037 * 3 2 1 6 6 H 1.48501 * 109.47124 * 150.00024 * 3 2 1 7 7 C 1.38815 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.84641 * 23.80011 * 10 9 7 12 12 C 1.53785 * 113.61608 * 154.99520 * 10 9 7 13 13 C 1.53781 * 87.07861 * 89.20099 * 12 10 9 14 14 H 1.09001 * 113.61030 * 270.79867 * 13 12 10 15 15 N 1.46499 * 113.61433 * 139.98479 * 13 12 10 16 16 C 1.34777 * 120.00199 * 155.00089 * 15 13 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 13 19 19 H 1.08999 * 115.57592 * 34.13570 * 18 16 15 20 20 C 1.52305 * 117.53682 * 179.97438 * 18 16 15 21 21 H 1.08998 * 115.91384 * 1.58543 * 20 18 16 22 22 C 1.52072 * 119.83702 * 217.19229 * 20 18 16 23 23 C 1.52865 * 110.51420 * 310.45007 * 22 20 18 24 24 C 1.53292 * 108.59287 * 305.10860 * 23 22 20 25 25 C 1.52872 * 108.58203 * 74.44537 * 24 23 22 26 26 C 1.52298 * 60.58725 * 107.41047 * 20 18 16 27 27 H 1.09006 * 117.29894 * 252.90023 * 26 20 18 28 28 C 1.53780 * 113.69107 * 252.53348 * 10 9 7 29 29 H 0.97000 * 120.00319 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99842 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.61007 * 334.65221 * 12 10 9 32 32 H 1.08990 * 113.69025 * 203.76147 * 12 10 9 33 33 H 0.97000 * 119.99484 * 334.99186 * 15 13 12 34 34 H 1.09006 * 109.26386 * 70.72072 * 22 20 18 35 35 H 1.08999 * 109.26875 * 190.21511 * 22 20 18 36 36 H 1.08996 * 109.62133 * 64.84373 * 23 22 20 37 37 H 1.09011 * 109.61314 * 185.19677 * 23 22 20 38 38 H 1.08999 * 109.62152 * 194.17386 * 24 23 22 39 39 H 1.09003 * 109.62191 * 314.71624 * 24 23 22 40 40 H 1.09003 * 109.35746 * 65.68859 * 25 24 23 41 41 H 1.09004 * 109.36129 * 185.26925 * 25 24 23 42 42 H 1.08993 * 113.61656 * 156.32367 * 28 10 9 43 43 H 1.09004 * 113.61428 * 25.41668 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 1 3.0657 -3.5641 0.4027 12 6 1.2604 -4.8294 0.5918 13 6 0.7223 -5.0798 -0.8269 14 1 -0.1893 -4.5263 -1.0521 15 7 0.6269 -6.4993 -1.1762 16 6 -0.2511 -6.9048 -2.1149 17 8 -0.9625 -6.0945 -2.6701 18 6 -0.3536 -8.3659 -2.4698 19 1 -0.1904 -9.0624 -1.6474 20 6 -1.3647 -8.7619 -3.5377 21 1 -1.9262 -7.9437 -3.9888 22 6 -2.1401 -10.0628 -3.4002 23 6 -1.1911 -11.2229 -3.0996 24 6 -0.1123 -11.2663 -4.1877 25 6 0.8697 -10.1198 -3.9462 26 6 0.1218 -8.7925 -3.8672 27 1 0.5047 -8.0107 -4.5233 28 6 2.0011 -4.4020 -1.3467 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0016 31 1 0.4931 -4.5200 1.3015 32 1 1.8861 -5.6374 0.9705 33 1 1.1958 -7.1474 -0.7319 34 1 -2.8608 -9.9678 -2.5879 35 1 -2.6713 -10.2650 -4.3302 36 1 -0.7237 -11.0708 -2.1267 37 1 -1.7483 -12.1598 -3.0953 38 1 0.4173 -12.2178 -4.1403 39 1 -0.5758 -11.1509 -5.1675 40 1 1.4008 -10.2902 -3.0097 41 1 1.5884 -10.0811 -4.7648 42 1 2.8305 -5.0927 -1.4985 43 1 1.8318 -3.7478 -2.2019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020051800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:32 Heat of formation + Delta-G solvation = -21.471169 kcal Electronic energy + Delta-G solvation = -21364.130337 eV Core-core repulsion = 18215.988120 eV Total energy + Delta-G solvation = -3148.142218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57551 -40.28978 -38.89532 -35.74722 -34.31620 -33.88704 -31.71082 -31.64412 -27.17975 -26.54061 -25.91552 -24.49556 -23.41861 -22.90273 -21.28085 -20.26270 -19.38535 -19.22260 -18.45484 -17.39478 -16.68033 -16.41911 -16.07158 -15.72070 -15.40379 -15.05153 -14.83535 -14.80266 -14.57484 -14.25887 -13.65387 -13.37823 -13.30868 -13.23515 -13.13872 -12.81886 -12.70602 -12.62360 -12.18727 -12.01979 -11.84530 -11.74364 -11.74292 -11.37824 -11.16858 -11.01185 -10.89958 -10.72387 -10.54093 -9.98645 -9.05761 -7.97632 -5.27916 1.45305 1.45733 1.48449 1.56779 2.17390 2.53804 2.77869 3.34162 3.59361 3.63966 3.70516 3.73907 3.83096 3.88019 4.03332 4.06842 4.19231 4.27727 4.32533 4.36681 4.40970 4.65231 4.69497 4.77626 4.80451 4.85860 4.95997 5.00231 5.06437 5.12857 5.14283 5.22675 5.27286 5.29862 5.34353 5.37055 5.45497 5.49247 5.55779 5.67453 6.24682 6.61441 7.28939 7.30495 8.04980 8.26418 9.26049 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041829 B = 0.002900 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.227808 B = 9652.063540 C = 9812.061799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.151 3.849 11 H 0.080 0.920 12 C -0.137 4.137 13 C 0.129 3.871 14 H 0.065 0.935 15 N -0.696 5.696 16 C 0.529 3.471 17 O -0.599 6.599 18 C -0.185 4.185 19 H 0.153 0.847 20 C -0.114 4.114 21 H 0.079 0.921 22 C -0.086 4.086 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.087 4.087 26 C -0.108 4.108 27 H 0.086 0.914 28 C -0.171 4.171 29 H 0.251 0.749 30 H 0.371 0.629 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.419 0.581 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 -28.308 -4.443 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.375 4.375 8 H 0.101 0.899 9 N -0.362 5.362 10 C 0.040 3.960 11 H 0.098 0.902 12 C -0.176 4.176 13 C 0.024 3.976 14 H 0.084 0.916 15 N -0.346 5.346 16 C 0.317 3.683 17 O -0.480 6.480 18 C -0.206 4.206 19 H 0.171 0.829 20 C -0.133 4.133 21 H 0.098 0.902 22 C -0.123 4.123 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.124 4.124 26 C -0.127 4.127 27 H 0.105 0.895 28 C -0.213 4.213 29 H 0.060 0.940 30 H 0.202 0.798 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.256 0.744 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.581 -27.589 -4.784 28.120 hybrid contribution -0.254 1.569 -0.042 1.590 sum 2.327 -26.020 -4.825 26.566 Atomic orbital electron populations 1.69847 1.06885 1.26172 1.59453 1.25678 0.96400 1.01516 1.03633 0.85074 0.77848 0.79109 0.77329 1.21686 1.22259 1.18756 1.19731 0.91724 0.84980 1.41112 0.89885 1.42417 1.05316 1.00977 1.87470 1.21245 0.95832 0.84548 0.94326 0.90180 1.23736 1.00094 0.99231 0.94570 1.22192 0.97408 0.81183 0.96848 0.91634 1.45800 1.39945 1.08715 1.40180 1.20523 0.78657 0.90555 0.78521 1.90700 1.45684 1.57079 1.54510 1.22508 1.09985 0.91980 0.96107 0.82950 1.21938 0.91801 0.99900 0.99658 0.90233 1.20896 0.97511 0.91355 1.02546 1.21642 0.97000 0.97876 0.99275 1.21575 0.96725 0.98215 0.98990 1.21109 0.97286 0.90660 1.03382 1.22390 0.96522 1.00012 0.93744 0.89533 1.24184 0.97960 0.99529 0.99602 0.94026 0.79765 0.92115 0.85432 0.74353 0.91295 0.90589 0.91294 0.90289 0.90091 0.92030 0.89901 0.90602 0.87521 0.94962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.92 13.06 21.65 0.28 -61.63 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 3 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.24 -13.80 9.97 84.03 0.84 -12.96 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.72 -37.71 5.31 -320.44 -1.70 -39.41 16 10 C 0.15 5.87 4.56 45.52 0.21 6.08 16 11 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 12 C -0.14 -4.15 7.58 31.12 0.24 -3.92 16 13 C 0.13 4.40 4.12 45.52 0.19 4.59 16 14 H 0.07 2.90 7.46 -2.39 -0.02 2.89 16 15 N -0.70 -18.08 5.35 -440.03 -2.36 -20.44 16 16 C 0.53 15.99 7.62 87.66 0.67 16.66 16 17 O -0.60 -25.19 15.79 -3.04 -0.05 -25.24 16 18 C -0.19 -3.75 5.31 -11.55 -0.06 -3.81 16 19 H 0.15 2.10 7.26 -2.39 -0.02 2.08 16 20 C -0.11 -2.36 5.58 -11.56 -0.06 -2.42 16 21 H 0.08 2.18 7.55 -2.39 -0.02 2.16 16 22 C -0.09 -1.23 5.93 30.24 0.18 -1.05 16 23 C -0.12 -1.19 5.70 30.65 0.17 -1.02 16 24 C -0.12 -1.12 5.93 30.65 0.18 -0.94 16 25 C -0.09 -1.00 5.82 30.40 0.18 -0.82 16 26 C -0.11 -1.98 5.90 -10.95 -0.06 -2.04 16 27 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 28 C -0.17 -6.05 7.68 31.12 0.24 -5.81 16 29 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.37 21.21 7.90 -92.71 -0.73 20.48 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.13 2.66 8.12 -2.39 -0.02 2.64 16 33 H 0.42 7.08 8.73 -92.71 -0.81 6.27 16 34 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 0.63 7.11 -2.39 -0.02 0.61 16 37 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.66 8.04 -2.39 -0.02 0.64 16 40 H 0.08 0.75 8.06 -2.39 -0.02 0.73 16 41 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.60 345.35 1.03 -74.57 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.54 Total: 34.79 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 3.36 Total: -11.74 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -3.78 Total: -121.49 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -75.60 1.03 -74.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020051800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.099 kcal (2) G-P(sol) polarization free energy of solvation -75.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds