Wall clock time and date at job start Tue Mar 31 2020 00:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85174 * 25.33784 * 10 9 7 12 12 C 1.53778 * 113.61243 * 156.52902 * 10 9 7 13 13 C 1.53782 * 87.08085 * 139.98122 * 12 10 9 14 14 H 1.09003 * 113.61518 * 219.93024 * 13 12 10 15 15 N 1.46501 * 113.61205 * 89.11782 * 13 12 10 16 16 C 1.34780 * 120.00056 * 155.00042 * 15 13 12 17 17 O 1.21620 * 119.99894 * 359.97438 * 16 15 13 18 18 C 1.47100 * 120.00079 * 180.02562 * 16 15 13 19 19 C 1.31561 * 119.85227 * 179.72578 * 18 16 15 20 20 C 1.51413 * 120.28990 * 179.79232 * 19 18 16 21 21 C 1.53027 * 108.75713 * 288.80082 * 20 19 18 22 22 C 1.51782 * 110.81086 * 85.64955 * 21 20 19 23 23 C 1.51785 * 113.84239 * 293.05780 * 22 21 20 24 24 C 1.51404 * 119.85358 * 359.97438 * 18 16 15 25 25 C 1.53781 * 113.61483 * 254.13539 * 10 9 7 26 26 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 28 28 H 1.08996 * 113.61839 * 254.52927 * 12 10 9 29 29 H 1.09004 * 113.61298 * 25.35397 * 12 10 9 30 30 H 0.96995 * 119.99938 * 335.00079 * 15 13 12 31 31 H 1.07996 * 119.85677 * 0.02562 * 19 18 16 32 32 H 1.08998 * 109.58198 * 168.98473 * 20 19 18 33 33 H 1.08999 * 109.47755 * 48.55368 * 20 19 18 34 34 H 1.09000 * 109.21065 * 325.30226 * 21 20 19 35 35 H 1.09002 * 109.21117 * 205.98981 * 21 20 19 36 36 H 1.09004 * 108.60849 * 171.93257 * 22 21 20 37 37 H 1.08998 * 108.49634 * 54.10681 * 22 21 20 38 38 H 1.09003 * 109.20541 * 306.59840 * 23 22 21 39 39 H 1.08994 * 109.20950 * 187.27883 * 23 22 21 40 40 H 1.08999 * 109.62110 * 11.29990 * 24 18 16 41 41 H 1.09001 * 109.61833 * 131.84209 * 24 18 16 42 42 H 1.08998 * 113.61627 * 334.57498 * 25 10 9 43 43 H 1.09006 * 113.60895 * 105.47498 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0562 -3.5696 0.4275 12 6 1.2472 -4.8367 0.5596 13 6 1.8601 -5.6900 -0.5633 14 1 1.1557 -6.3886 -1.0149 15 7 3.1297 -6.3211 -0.1944 16 6 3.5285 -7.4476 -0.8177 17 8 2.8342 -7.9404 -1.6862 18 6 4.8030 -8.0816 -0.4469 19 6 5.1869 -9.1841 -1.0535 20 6 6.4990 -9.8424 -0.6829 21 6 7.6484 -8.9736 -1.1985 22 6 7.9936 -7.8863 -0.1973 23 6 6.9015 -6.8473 -0.0190 24 6 5.6644 -7.4656 0.6351 25 6 2.0314 -4.3822 -1.3573 26 1 -0.4850 -0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 1.5563 -5.1429 1.5590 29 1 0.1685 -4.7064 0.4716 30 1 3.6832 -5.9283 0.4985 31 1 4.5651 -9.6194 -1.8218 32 1 6.5538 -10.8306 -1.1397 33 1 6.5667 -9.9332 0.4012 34 1 7.3544 -8.5126 -2.1415 35 1 8.5250 -9.5998 -1.3643 36 1 8.9016 -7.3830 -0.5295 37 1 8.1894 -8.3542 0.7675 38 1 6.6278 -6.4438 -0.9939 39 1 7.2744 -6.0396 0.6108 40 1 5.1005 -6.6916 1.1557 41 1 5.9711 -8.2366 1.3420 42 1 1.1678 -4.1280 -1.9717 43 1 2.9730 -4.3220 -1.9033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020102144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:25 Heat of formation + Delta-G solvation = -6.756583 kcal Electronic energy + Delta-G solvation = -21637.138290 eV Core-core repulsion = 18489.634144 eV Total energy + Delta-G solvation = -3147.504146 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33046 -38.74255 -37.59603 -34.33036 -33.17380 -32.62390 -31.84575 -29.57629 -26.06640 -25.20995 -24.91986 -23.97226 -22.53599 -21.56087 -20.66819 -19.06228 -18.42410 -17.45793 -17.24172 -16.18267 -15.35221 -15.14257 -14.96028 -14.79562 -14.25140 -13.94778 -13.89824 -13.56545 -13.45114 -13.35565 -12.92918 -12.27684 -12.23080 -11.98279 -11.93386 -11.54562 -11.38559 -11.01949 -10.96978 -10.81757 -10.75581 -10.56312 -10.30655 -10.11271 -9.94467 -9.77611 -9.27795 -9.16730 -8.92496 -8.76240 -7.06260 -6.13814 -3.13898 1.31349 3.21998 3.29758 3.49826 3.54709 3.68825 4.33442 4.50441 4.53913 4.65458 4.69566 4.72212 4.89730 4.97160 5.06874 5.14975 5.19157 5.32114 5.36773 5.42142 5.46053 5.48834 5.53699 5.75310 5.79781 5.81204 5.82327 5.84511 5.88205 6.03204 6.08932 6.14718 6.22789 6.26082 6.39580 6.47956 6.57890 6.61788 7.01102 7.61970 7.78012 8.29951 8.72199 9.18729 10.05081 10.20040 11.34499 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.003508 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.239446 B = 7979.690690 C = 8823.931319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.336 4.336 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.172 3.828 11 H 0.073 0.927 12 C -0.160 4.160 13 C 0.116 3.884 14 H 0.096 0.904 15 N -0.702 5.702 16 C 0.553 3.447 17 O -0.549 6.549 18 C -0.177 4.177 19 C -0.074 4.074 20 C -0.096 4.096 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.081 4.081 25 C -0.175 4.175 26 H 0.256 0.744 27 H 0.369 0.631 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.400 0.600 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.960 -19.450 1.626 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.364 5.364 10 C 0.060 3.940 11 H 0.091 0.909 12 C -0.200 4.200 13 C 0.011 3.989 14 H 0.114 0.886 15 N -0.353 5.353 16 C 0.341 3.659 17 O -0.428 6.428 18 C -0.180 4.180 19 C -0.094 4.094 20 C -0.133 4.133 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.119 4.119 25 C -0.217 4.217 26 H 0.067 0.933 27 H 0.202 0.798 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.236 0.764 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.526 -18.039 1.029 23.183 hybrid contribution 0.078 -1.467 0.249 1.490 sum 14.604 -19.506 1.278 24.400 Atomic orbital electron populations 1.70850 1.06072 1.28515 1.53366 1.25803 0.97047 1.01096 1.00257 0.83198 0.73912 0.75298 0.76244 1.22270 1.21342 1.22123 1.20118 0.92071 0.85873 1.48661 0.91670 1.42412 1.04791 1.00859 1.88321 1.21553 0.94929 0.84670 0.92826 0.90857 1.23846 1.01326 0.97442 0.97400 1.21837 0.85259 0.93989 0.97853 0.88590 1.45691 1.22779 1.26366 1.40439 1.18403 0.85800 0.80323 0.81364 1.90769 1.55978 1.64115 1.31985 1.21235 0.96022 0.98697 1.02020 1.23316 0.95850 0.93767 0.96419 1.20953 0.91931 0.98657 1.01737 1.21265 0.97442 0.97111 0.99408 1.21140 0.98474 0.96534 0.99476 1.21304 0.94619 0.97978 1.01613 1.20774 0.95413 1.00025 0.95669 1.24312 1.01923 0.95200 1.00303 0.93309 0.79760 0.91683 0.89180 0.76372 0.85717 0.90798 0.90356 0.91607 0.91486 0.92078 0.92158 0.91554 0.91212 0.91245 0.90259 0.89753 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.17 13.70 55.49 0.76 -28.41 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 3 Si 1.08 25.88 29.92 -169.99 -5.09 20.80 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.34 -9.43 9.97 -15.06 -0.15 -9.58 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -18.07 5.41 -52.64 -0.28 -18.35 16 10 C 0.17 3.39 4.34 -67.12 -0.29 3.10 16 11 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 12 C -0.16 -2.60 7.58 -25.92 -0.20 -2.79 16 13 C 0.12 1.84 4.33 -67.03 -0.29 1.55 16 14 H 0.10 1.60 7.46 -51.93 -0.39 1.21 16 15 N -0.70 -9.70 5.22 -54.11 -0.28 -9.99 16 16 C 0.55 8.09 7.75 -12.66 -0.10 7.99 16 17 O -0.55 -10.04 15.78 5.26 0.08 -9.95 16 18 C -0.18 -1.95 5.10 -102.53 -0.52 -2.48 16 19 C -0.07 -0.74 8.94 -35.81 -0.32 -1.06 16 20 C -0.10 -0.67 5.61 -27.52 -0.15 -0.83 16 21 C -0.11 -0.78 5.66 -27.34 -0.15 -0.93 16 22 C -0.12 -0.80 5.27 -27.97 -0.15 -0.95 16 23 C -0.12 -0.95 5.66 -27.35 -0.15 -1.11 16 24 C -0.08 -0.69 5.37 -27.54 -0.15 -0.84 16 25 C -0.18 -3.20 7.69 -25.83 -0.20 -3.40 16 26 H 0.26 7.77 6.77 -40.82 -0.28 7.49 16 27 H 0.37 9.47 6.74 -40.82 -0.28 9.19 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 30 H 0.40 4.71 6.48 -40.82 -0.26 4.45 16 31 H 0.13 1.39 7.44 -52.49 -0.39 1.00 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.50 6.74 -51.93 -0.35 0.15 16 34 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 38 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.57 5.99 -51.93 -0.31 0.26 16 41 H 0.08 0.57 6.74 -51.93 -0.35 0.22 16 42 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -33.12 339.10 -9.46 -42.58 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.84 Total: 10.92 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.92 Total: -12.71 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.19 Total: -56.75 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.09 Total: 20.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.12 -9.46 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020102144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.826 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds