Wall clock time and date at job start Tue Mar 31 2020 00:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85174 * 25.33784 * 10 9 7 12 12 C 1.53778 * 113.61243 * 156.52902 * 10 9 7 13 13 C 1.53782 * 87.08085 * 139.98122 * 12 10 9 14 14 H 1.09003 * 113.61518 * 219.93024 * 13 12 10 15 15 N 1.46501 * 113.61205 * 89.11782 * 13 12 10 16 16 C 1.34780 * 120.00056 * 155.00042 * 15 13 12 17 17 O 1.21620 * 119.99894 * 359.97438 * 16 15 13 18 18 C 1.47100 * 120.00079 * 180.02562 * 16 15 13 19 19 C 1.31561 * 119.85227 * 179.72578 * 18 16 15 20 20 C 1.51413 * 120.28990 * 179.79232 * 19 18 16 21 21 C 1.53027 * 108.75713 * 288.80082 * 20 19 18 22 22 C 1.51782 * 110.81086 * 85.64955 * 21 20 19 23 23 C 1.51785 * 113.84239 * 293.05780 * 22 21 20 24 24 C 1.51404 * 119.85358 * 359.97438 * 18 16 15 25 25 C 1.53781 * 113.61483 * 254.13539 * 10 9 7 26 26 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 28 28 H 1.08996 * 113.61839 * 254.52927 * 12 10 9 29 29 H 1.09004 * 113.61298 * 25.35397 * 12 10 9 30 30 H 0.96995 * 119.99938 * 335.00079 * 15 13 12 31 31 H 1.07996 * 119.85677 * 0.02562 * 19 18 16 32 32 H 1.08998 * 109.58198 * 168.98473 * 20 19 18 33 33 H 1.08999 * 109.47755 * 48.55368 * 20 19 18 34 34 H 1.09000 * 109.21065 * 325.30226 * 21 20 19 35 35 H 1.09002 * 109.21117 * 205.98981 * 21 20 19 36 36 H 1.09004 * 108.60849 * 171.93257 * 22 21 20 37 37 H 1.08998 * 108.49634 * 54.10681 * 22 21 20 38 38 H 1.09003 * 109.20541 * 306.59840 * 23 22 21 39 39 H 1.08994 * 109.20950 * 187.27883 * 23 22 21 40 40 H 1.08999 * 109.62110 * 11.29990 * 24 18 16 41 41 H 1.09001 * 109.61833 * 131.84209 * 24 18 16 42 42 H 1.08998 * 113.61627 * 334.57498 * 25 10 9 43 43 H 1.09006 * 113.60895 * 105.47498 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0562 -3.5696 0.4275 12 6 1.2472 -4.8367 0.5596 13 6 1.8601 -5.6900 -0.5633 14 1 1.1557 -6.3886 -1.0149 15 7 3.1297 -6.3211 -0.1944 16 6 3.5285 -7.4476 -0.8177 17 8 2.8342 -7.9404 -1.6862 18 6 4.8030 -8.0816 -0.4469 19 6 5.1869 -9.1841 -1.0535 20 6 6.4990 -9.8424 -0.6829 21 6 7.6484 -8.9736 -1.1985 22 6 7.9936 -7.8863 -0.1973 23 6 6.9015 -6.8473 -0.0190 24 6 5.6644 -7.4656 0.6351 25 6 2.0314 -4.3822 -1.3573 26 1 -0.4850 -0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 1.5563 -5.1429 1.5590 29 1 0.1685 -4.7064 0.4716 30 1 3.6832 -5.9283 0.4985 31 1 4.5651 -9.6194 -1.8218 32 1 6.5538 -10.8306 -1.1397 33 1 6.5667 -9.9332 0.4012 34 1 7.3544 -8.5126 -2.1415 35 1 8.5250 -9.5998 -1.3643 36 1 8.9016 -7.3830 -0.5295 37 1 8.1894 -8.3542 0.7675 38 1 6.6278 -6.4438 -0.9939 39 1 7.2744 -6.0396 0.6108 40 1 5.1005 -6.6916 1.1557 41 1 5.9711 -8.2366 1.3420 42 1 1.1678 -4.1280 -1.9717 43 1 2.9730 -4.3220 -1.9033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020102144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:24 Heat of formation + Delta-G solvation = -27.612647 kcal Electronic energy + Delta-G solvation = -21638.042677 eV Core-core repulsion = 18489.634144 eV Total energy + Delta-G solvation = -3148.408532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49402 -39.88734 -38.66169 -36.15481 -34.46817 -33.43093 -32.70943 -31.45266 -26.89937 -26.68343 -26.20714 -25.31068 -24.06126 -22.67855 -21.25482 -20.49425 -19.67571 -19.17503 -18.20575 -17.43794 -16.89577 -16.24229 -16.00505 -15.89271 -15.72761 -15.36299 -15.13816 -14.63201 -14.50895 -14.13228 -13.85266 -13.72097 -13.46579 -13.28731 -12.94464 -12.66877 -12.61133 -12.44551 -12.10795 -11.88517 -11.87693 -11.64987 -11.60434 -11.53518 -11.34141 -11.12124 -10.91072 -10.87295 -10.23126 -9.92236 -9.12248 -8.40564 -5.34880 0.39671 1.58320 1.69040 1.82944 2.08615 2.21884 2.71082 3.36355 3.55484 3.61535 3.71194 3.73504 3.76062 3.97940 4.08930 4.10621 4.15434 4.18819 4.21692 4.46223 4.55892 4.59694 4.73361 4.76553 4.78245 4.83688 4.87485 4.95144 4.99933 5.06843 5.13447 5.23173 5.26129 5.28281 5.32944 5.49176 5.52590 5.56462 5.60430 5.66681 6.48190 6.50411 7.07482 7.15834 7.97750 8.09673 9.11361 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.003508 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.239446 B = 7979.690690 C = 8823.931319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.105 4.105 3 Si 1.130 2.870 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.159 3.841 11 H 0.080 0.920 12 C -0.141 4.141 13 C 0.133 3.867 14 H 0.090 0.910 15 N -0.694 5.694 16 C 0.547 3.453 17 O -0.593 6.593 18 C -0.191 4.191 19 C -0.063 4.063 20 C -0.091 4.091 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.076 4.076 25 C -0.172 4.172 26 H 0.245 0.755 27 H 0.361 0.639 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.412 0.588 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.442 -20.626 2.916 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.296 4.296 3 Si 0.954 3.046 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.049 3.951 11 H 0.098 0.902 12 C -0.181 4.181 13 C 0.027 3.973 14 H 0.108 0.892 15 N -0.345 5.345 16 C 0.338 3.662 17 O -0.475 6.475 18 C -0.194 4.194 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.113 4.113 25 C -0.214 4.214 26 H 0.055 0.945 27 H 0.194 0.806 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.251 0.749 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.060 -19.264 2.343 25.839 hybrid contribution -0.664 -1.221 -0.219 1.407 sum 16.396 -20.485 2.124 26.324 Atomic orbital electron populations 1.70961 1.07246 1.27977 1.56269 1.27217 0.97110 1.04767 1.00526 0.82598 0.73514 0.71498 0.76947 1.20860 1.22178 1.19858 1.20473 0.92450 0.87078 1.46579 0.91325 1.42608 1.04655 1.01871 1.88769 1.21872 0.95463 0.83684 0.94067 0.90227 1.23660 1.00818 0.95029 0.98577 1.21538 0.86101 0.92819 0.96890 0.89196 1.45602 1.22152 1.26171 1.40584 1.19052 0.86625 0.80027 0.80484 1.90745 1.57563 1.65285 1.33941 1.21217 0.95003 0.99321 1.03815 1.23547 0.96719 0.93125 0.94937 1.21027 0.89903 0.98979 1.02840 1.21271 0.97907 0.97317 0.98619 1.21147 0.97962 0.96211 1.00269 1.21311 0.94993 0.98684 1.00531 1.20807 0.94972 1.00504 0.95017 1.24175 1.01032 0.96704 0.99533 0.94493 0.80642 0.89346 0.89279 0.74939 0.87526 0.89369 0.88737 0.93314 0.89637 0.91690 0.90553 0.93740 0.90440 0.91063 0.88231 0.91218 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.41 13.70 21.65 0.30 -61.12 16 2 C -0.11 -6.11 5.50 84.86 0.47 -5.64 16 3 Si 1.13 51.86 29.92 68.60 2.05 53.92 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.33 -18.72 9.97 84.03 0.84 -17.88 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.74 -37.13 5.41 -320.45 -1.73 -38.86 16 10 C 0.16 6.16 4.34 45.52 0.20 6.36 16 11 H 0.08 2.98 8.11 -2.39 -0.02 2.96 16 12 C -0.14 -4.41 7.58 31.12 0.24 -4.17 16 13 C 0.13 4.14 4.33 45.58 0.20 4.33 16 14 H 0.09 2.99 7.46 -2.39 -0.02 2.97 16 15 N -0.69 -18.49 5.22 -443.35 -2.31 -20.80 16 16 C 0.55 15.82 7.75 86.57 0.67 16.49 16 17 O -0.59 -22.00 15.78 -4.09 -0.06 -22.07 16 18 C -0.19 -3.98 5.10 -17.88 -0.09 -4.07 16 19 C -0.06 -1.19 8.94 25.34 0.23 -0.96 16 20 C -0.09 -1.02 5.61 30.08 0.17 -0.85 16 21 C -0.11 -1.25 5.66 30.20 0.17 -1.08 16 22 C -0.12 -1.26 5.27 29.79 0.16 -1.10 16 23 C -0.12 -1.66 5.66 30.19 0.17 -1.49 16 24 C -0.08 -1.10 5.37 30.07 0.16 -0.94 16 25 C -0.17 -6.34 7.69 31.18 0.24 -6.10 16 26 H 0.24 15.31 6.77 -92.71 -0.63 14.68 16 27 H 0.36 18.96 6.74 -92.71 -0.62 18.34 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.09 2.85 8.11 -2.39 -0.02 2.83 16 30 H 0.41 8.98 6.48 -92.71 -0.60 8.38 16 31 H 0.11 2.39 7.44 -2.91 -0.02 2.37 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.82 6.74 -2.39 -0.02 0.81 16 34 H 0.05 0.71 7.86 -2.39 -0.02 0.69 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.60 7.87 -2.39 -0.02 0.58 16 38 H 0.04 0.82 7.85 -2.39 -0.02 0.80 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.00 5.99 -2.39 -0.01 0.98 16 41 H 0.10 1.07 6.74 -2.39 -0.02 1.05 16 42 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -72.24 339.10 1.98 -70.26 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.07 Total: 35.77 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.81 Total: -17.11 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -3.75 Total: -120.78 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.06 Total: -22.07 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.92 kcal Total: -72.24 1.98 -70.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020102144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.647 kcal (2) G-P(sol) polarization free energy of solvation -72.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds