Wall clock time and date at job start Tue Mar 31 2020 00:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48499 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47353 * 300.00304 * 3 2 1 6 6 H 1.48503 * 109.46873 * 60.00255 * 3 2 1 7 7 C 1.38814 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99932 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 2 11 11 H 1.09008 * 112.85066 * 336.19587 * 10 9 7 12 12 C 1.53776 * 113.69328 * 107.46461 * 10 9 7 13 13 C 1.53782 * 87.08446 * 139.98941 * 12 10 9 14 14 H 1.08995 * 113.69570 * 220.00481 * 13 12 10 15 15 N 1.46503 * 113.61284 * 89.11457 * 13 12 10 16 16 C 1.34774 * 120.00128 * 107.50643 * 15 13 12 17 17 O 1.21280 * 119.99786 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00168 * 180.02562 * 16 15 13 19 19 C 1.53003 * 109.46929 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.24679 * 54.65382 * 19 18 16 21 21 C 1.50070 * 109.36006 * 294.99769 * 19 18 16 22 22 C 1.29443 * 124.07366 * 222.92835 * 21 19 18 23 23 C 1.50065 * 124.07980 * 359.94620 * 22 21 19 24 24 C 1.53022 * 110.19829 * 343.32387 * 23 22 21 25 25 C 1.53027 * 109.35478 * 174.30946 * 19 18 16 26 26 C 1.53780 * 87.07886 * 334.57064 * 13 12 10 27 27 H 0.97005 * 120.00067 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99945 * 0.02562 * 9 7 2 29 29 H 1.09001 * 113.61873 * 25.44252 * 12 10 9 30 30 H 1.09004 * 113.61741 * 254.53563 * 12 10 9 31 31 H 0.97004 * 120.00426 * 287.50960 * 15 13 12 32 32 H 1.08999 * 109.47089 * 59.99839 * 18 16 15 33 33 H 1.08996 * 109.47222 * 299.99967 * 18 16 15 34 34 H 1.08002 * 117.95792 * 42.63726 * 21 19 18 35 35 H 1.08004 * 117.95536 * 180.19025 * 22 21 19 36 36 H 1.09002 * 109.48570 * 223.00094 * 23 22 21 37 37 H 1.08994 * 109.06324 * 103.38489 * 23 22 21 38 38 H 1.08993 * 109.64759 * 289.55912 * 24 23 22 39 39 H 1.09000 * 109.81311 * 169.03276 * 24 23 22 40 40 H 1.08997 * 109.64512 * 289.32478 * 25 19 18 41 41 H 1.09001 * 109.64307 * 49.96194 * 25 19 18 42 42 H 1.08999 * 113.61780 * 139.98230 * 26 13 12 43 43 H 1.08998 * 113.60917 * 270.79625 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0655 -3.5639 -0.4060 12 6 2.0009 -4.4033 1.3427 13 6 1.8495 -5.6982 0.5271 14 1 1.1362 -6.4035 0.9535 15 7 3.1271 -6.3233 0.1761 16 6 3.5134 -7.4586 0.7912 17 8 2.8035 -7.9623 1.6358 18 6 4.8278 -8.1013 0.4305 19 6 5.0239 -9.3663 1.2686 20 1 4.1619 -10.0207 1.1385 21 6 5.1485 -8.9899 2.7160 22 6 6.0160 -9.5047 3.5271 23 6 7.0176 -10.5507 3.1340 24 6 6.6090 -11.2027 1.8112 25 6 6.2873 -10.0929 0.8023 26 6 1.2600 -4.8288 -0.5960 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 1.1232 -4.1591 1.9411 30 1 2.9296 -4.3513 1.9110 31 1 3.6951 -5.9202 -0.4991 32 1 5.6407 -7.4034 0.6311 33 1 4.8262 -8.3627 -0.6276 34 1 4.4755 -8.2395 3.1037 35 1 6.0164 -9.1627 4.5516 36 1 7.0712 -11.3131 3.9112 37 1 7.9951 -10.0824 3.0193 38 1 5.7271 -11.8241 1.9659 39 1 7.4273 -11.8156 1.4332 40 1 6.1166 -10.5303 -0.1814 41 1 7.1182 -9.3890 0.7546 42 1 1.5905 -5.1202 -1.5930 43 1 0.1795 -4.7021 -0.5286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020283454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:33 Heat of formation + Delta-G solvation = -9.436378 kcal Electronic energy + Delta-G solvation = -21170.007531 eV Core-core repulsion = 18022.387181 eV Total energy + Delta-G solvation = -3147.620350 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21283 -38.82925 -37.63955 -34.02271 -32.97694 -32.37434 -31.16314 -29.91216 -27.48889 -25.12470 -24.53794 -22.90687 -22.41064 -21.93010 -20.42021 -18.93498 -18.09709 -17.24317 -16.96252 -16.17496 -15.80192 -15.23175 -14.96453 -14.47630 -14.30967 -13.95548 -13.57920 -13.49446 -13.09525 -12.86526 -12.68615 -12.47796 -12.27877 -12.10193 -11.86218 -11.73078 -11.54529 -11.09591 -10.92947 -10.79254 -10.74560 -10.33580 -10.28376 -10.19819 -9.92174 -9.62166 -9.56391 -9.08013 -8.92313 -8.75214 -6.99646 -5.81577 -3.10597 2.24806 2.71633 3.26614 3.40370 3.45978 3.48319 4.45986 4.49976 4.56142 4.58568 4.79747 4.94724 5.03402 5.09369 5.21158 5.23051 5.25331 5.36702 5.44270 5.45852 5.48316 5.50328 5.55868 5.67978 5.71250 5.85773 5.86512 5.92935 6.11637 6.13486 6.18858 6.25019 6.32060 6.52174 6.62809 6.64179 6.70417 6.89198 7.08614 7.64128 7.66277 8.34042 8.36841 9.48113 10.05656 10.39964 11.40820 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.002816 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.616113 B = 9940.025997 C =10282.122606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.176 4.176 13 C 0.115 3.885 14 H 0.095 0.905 15 N -0.709 5.709 16 C 0.512 3.488 17 O -0.542 6.542 18 C -0.135 4.135 19 C -0.043 4.043 20 H 0.087 0.913 21 C -0.133 4.133 22 C -0.172 4.172 23 C -0.089 4.089 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.160 4.160 27 H 0.255 0.745 28 H 0.386 0.614 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.400 0.600 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.931 -21.346 0.543 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.055 3.945 11 H 0.091 0.909 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.113 0.887 15 N -0.359 5.359 16 C 0.298 3.702 17 O -0.419 6.419 18 C -0.175 4.175 19 C -0.061 4.061 20 H 0.105 0.895 21 C -0.151 4.151 22 C -0.191 4.191 23 C -0.126 4.126 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.199 4.199 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.234 0.766 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.527 -21.513 1.137 24.920 hybrid contribution 0.305 1.310 -0.182 1.357 sum 12.831 -20.203 0.954 23.952 Atomic orbital electron populations 1.69669 1.05147 1.25679 1.57453 1.24777 0.95537 0.97827 1.02781 0.86116 0.78785 0.84054 0.77218 1.20528 1.21825 1.21813 1.19336 0.91073 0.84217 1.42924 0.91075 1.42412 1.05786 0.99875 1.86970 1.21611 0.95031 0.85165 0.92712 0.90899 1.24295 1.01898 0.95417 1.00222 1.21805 0.85156 0.94038 0.98041 0.88739 1.45775 1.22056 1.25868 1.42219 1.20648 0.87865 0.80387 0.81252 1.90685 1.55414 1.63373 1.32415 1.21728 0.95782 0.98248 1.01738 1.19829 0.98542 0.95281 0.92456 0.89464 1.22201 0.97989 1.00082 0.94818 1.22013 0.98073 0.99535 0.99433 1.20425 0.98024 0.96964 0.97198 1.21586 1.01362 0.97573 0.95218 1.21680 0.97390 0.97749 0.98568 1.23854 1.01553 0.97326 0.97205 0.93465 0.78018 0.89681 0.92505 0.76600 0.88767 0.88714 0.87041 0.88217 0.91436 0.91249 0.91742 0.91766 0.91579 0.91540 0.91812 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.58 5.40 -52.64 -0.28 -17.87 16 10 C 0.17 3.19 4.35 -67.12 -0.29 2.89 16 11 H 0.07 1.35 8.10 -51.92 -0.42 0.93 16 12 C -0.18 -3.11 7.68 -25.92 -0.20 -3.31 16 13 C 0.12 1.74 4.32 -67.12 -0.29 1.45 16 14 H 0.09 1.52 7.46 -51.93 -0.39 1.13 16 15 N -0.71 -8.86 5.26 -53.02 -0.28 -9.14 16 16 C 0.51 6.57 7.46 -10.99 -0.08 6.49 16 17 O -0.54 -8.94 13.89 5.56 0.08 -8.87 16 18 C -0.13 -1.21 5.13 -27.88 -0.14 -1.36 16 19 C -0.04 -0.41 2.11 -92.06 -0.19 -0.61 16 20 H 0.09 0.96 7.94 -51.93 -0.41 0.54 16 21 C -0.13 -1.50 8.42 -35.90 -0.30 -1.80 16 22 C -0.17 -1.72 9.80 -35.90 -0.35 -2.07 16 23 C -0.09 -0.70 6.11 -28.18 -0.17 -0.87 16 24 C -0.12 -0.88 6.01 -26.51 -0.16 -1.04 16 25 C -0.12 -0.87 5.30 -26.51 -0.14 -1.01 16 26 C -0.16 -2.51 7.58 -25.92 -0.20 -2.71 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 28 H 0.39 10.12 7.93 -40.82 -0.32 9.80 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.40 4.08 8.70 -40.82 -0.36 3.73 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 1.52 6.53 -52.49 -0.34 1.18 16 35 H 0.10 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -31.65 346.73 -9.61 -41.26 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.28 Total: 10.74 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.77 Total: -11.26 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.16 Total: -54.25 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.65 -9.61 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020283454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.820 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds