Wall clock time and date at job start Tue Mar 31 2020 00:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48499 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47353 * 300.00304 * 3 2 1 6 6 H 1.48503 * 109.46873 * 60.00255 * 3 2 1 7 7 C 1.38814 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99932 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 2 11 11 H 1.09008 * 112.85066 * 336.19587 * 10 9 7 12 12 C 1.53776 * 113.69328 * 107.46461 * 10 9 7 13 13 C 1.53782 * 87.08446 * 139.98941 * 12 10 9 14 14 H 1.08995 * 113.69570 * 220.00481 * 13 12 10 15 15 N 1.46503 * 113.61284 * 89.11457 * 13 12 10 16 16 C 1.34774 * 120.00128 * 107.50643 * 15 13 12 17 17 O 1.21280 * 119.99786 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00168 * 180.02562 * 16 15 13 19 19 C 1.53003 * 109.46929 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.24679 * 54.65382 * 19 18 16 21 21 C 1.50070 * 109.36006 * 294.99769 * 19 18 16 22 22 C 1.29443 * 124.07366 * 222.92835 * 21 19 18 23 23 C 1.50065 * 124.07980 * 359.94620 * 22 21 19 24 24 C 1.53022 * 110.19829 * 343.32387 * 23 22 21 25 25 C 1.53027 * 109.35478 * 174.30946 * 19 18 16 26 26 C 1.53780 * 87.07886 * 334.57064 * 13 12 10 27 27 H 0.97005 * 120.00067 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99945 * 0.02562 * 9 7 2 29 29 H 1.09001 * 113.61873 * 25.44252 * 12 10 9 30 30 H 1.09004 * 113.61741 * 254.53563 * 12 10 9 31 31 H 0.97004 * 120.00426 * 287.50960 * 15 13 12 32 32 H 1.08999 * 109.47089 * 59.99839 * 18 16 15 33 33 H 1.08996 * 109.47222 * 299.99967 * 18 16 15 34 34 H 1.08002 * 117.95792 * 42.63726 * 21 19 18 35 35 H 1.08004 * 117.95536 * 180.19025 * 22 21 19 36 36 H 1.09002 * 109.48570 * 223.00094 * 23 22 21 37 37 H 1.08994 * 109.06324 * 103.38489 * 23 22 21 38 38 H 1.08993 * 109.64759 * 289.55912 * 24 23 22 39 39 H 1.09000 * 109.81311 * 169.03276 * 24 23 22 40 40 H 1.08997 * 109.64512 * 289.32478 * 25 19 18 41 41 H 1.09001 * 109.64307 * 49.96194 * 25 19 18 42 42 H 1.08999 * 113.61780 * 139.98230 * 26 13 12 43 43 H 1.08998 * 113.60917 * 270.79625 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0655 -3.5639 -0.4060 12 6 2.0009 -4.4033 1.3427 13 6 1.8495 -5.6982 0.5271 14 1 1.1362 -6.4035 0.9535 15 7 3.1271 -6.3233 0.1761 16 6 3.5134 -7.4586 0.7912 17 8 2.8035 -7.9623 1.6358 18 6 4.8278 -8.1013 0.4305 19 6 5.0239 -9.3663 1.2686 20 1 4.1619 -10.0207 1.1385 21 6 5.1485 -8.9899 2.7160 22 6 6.0160 -9.5047 3.5271 23 6 7.0176 -10.5507 3.1340 24 6 6.6090 -11.2027 1.8112 25 6 6.2873 -10.0929 0.8023 26 6 1.2600 -4.8288 -0.5960 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 1.1232 -4.1591 1.9411 30 1 2.9296 -4.3513 1.9110 31 1 3.6951 -5.9202 -0.4991 32 1 5.6407 -7.4034 0.6311 33 1 4.8262 -8.3627 -0.6276 34 1 4.4755 -8.2395 3.1037 35 1 6.0164 -9.1627 4.5516 36 1 7.0712 -11.3131 3.9112 37 1 7.9951 -10.0824 3.0193 38 1 5.7271 -11.8241 1.9659 39 1 7.4273 -11.8156 1.4332 40 1 6.1166 -10.5303 -0.1814 41 1 7.1182 -9.3890 0.7546 42 1 1.5905 -5.1202 -1.5930 43 1 0.1795 -4.7021 -0.5286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020283454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:32 Heat of formation + Delta-G solvation = -29.147780 kcal Electronic energy + Delta-G solvation = -21170.862282 eV Core-core repulsion = 18022.387181 eV Total energy + Delta-G solvation = -3148.475101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.29758 -39.87269 -38.71647 -35.75798 -34.16029 -33.43833 -31.84932 -31.77372 -28.31063 -26.56636 -26.30950 -24.13169 -23.24422 -22.97396 -21.41445 -20.35842 -19.15496 -18.80894 -18.07012 -17.08420 -16.97920 -16.58579 -16.21357 -15.76438 -15.58341 -15.09463 -15.02787 -14.43269 -14.27531 -13.80504 -13.56874 -13.51094 -13.41080 -13.33232 -13.15748 -12.96060 -12.84956 -12.58596 -12.34095 -12.11009 -11.84896 -11.75225 -11.69322 -11.39675 -11.19652 -11.02860 -10.86020 -10.63530 -9.97461 -9.85548 -8.99855 -7.95663 -5.24307 1.43322 1.47577 1.48205 1.58120 1.70524 2.23862 2.55995 3.36084 3.69092 3.73256 3.82662 3.85651 3.92155 3.95962 4.05795 4.30966 4.32300 4.33464 4.42955 4.51592 4.56425 4.72108 4.74689 4.84013 4.86024 4.89952 4.91826 4.96872 5.09860 5.12571 5.12956 5.21213 5.24948 5.29109 5.45289 5.50650 5.53063 5.73150 5.83446 6.11229 6.26548 6.64860 7.32531 7.34579 8.09143 8.31464 9.27889 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.002816 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.616113 B = 9940.025997 C =10282.122606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.728 5.728 10 C 0.155 3.845 11 H 0.085 0.915 12 C -0.174 4.174 13 C 0.134 3.866 14 H 0.086 0.914 15 N -0.701 5.701 16 C 0.508 3.492 17 O -0.583 6.583 18 C -0.126 4.126 19 C -0.041 4.041 20 H 0.069 0.931 21 C -0.154 4.154 22 C -0.167 4.167 23 C -0.090 4.090 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.142 4.142 27 H 0.251 0.749 28 H 0.373 0.627 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.415 0.585 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.643 -22.663 -0.731 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.045 3.955 11 H 0.102 0.898 12 C -0.216 4.216 13 C 0.028 3.972 14 H 0.104 0.896 15 N -0.353 5.353 16 C 0.297 3.703 17 O -0.463 6.463 18 C -0.165 4.165 19 C -0.059 4.059 20 H 0.087 0.913 21 C -0.172 4.172 22 C -0.185 4.185 23 C -0.126 4.126 24 C -0.159 4.159 25 C -0.148 4.148 26 C -0.182 4.182 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.251 0.749 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.304 -22.872 -0.156 27.520 hybrid contribution -0.515 1.625 0.304 1.731 sum 14.789 -21.247 0.149 25.888 Atomic orbital electron populations 1.69824 1.06683 1.25990 1.59646 1.25593 0.96382 1.01227 1.03845 0.85084 0.78374 0.79847 0.76528 1.18778 1.22012 1.22419 1.19749 0.91598 0.85298 1.40753 0.90294 1.42619 1.05448 1.01122 1.87342 1.21949 0.95680 0.83934 0.93964 0.89753 1.24153 1.00937 0.97029 0.99505 1.21446 0.86296 0.92761 0.96745 0.89634 1.45688 1.21238 1.25812 1.42515 1.21410 0.88763 0.79912 0.80215 1.90678 1.56955 1.64441 1.34198 1.21777 0.93488 0.97897 1.03374 1.19819 0.99190 0.95478 0.91458 0.91302 1.22145 0.98264 1.00424 0.96363 1.22242 0.97891 0.99362 0.99054 1.20489 0.97674 0.96512 0.97958 1.21619 1.01711 0.97641 0.94881 1.21673 0.96178 0.97701 0.99279 1.23658 1.00798 0.95208 0.98526 0.94061 0.79447 0.91565 0.92806 0.74855 0.87115 0.85507 0.90309 0.88608 0.90564 0.89974 0.92653 0.89786 0.89861 0.90628 0.89366 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 7 C -0.24 -13.22 9.97 84.03 0.84 -12.39 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.73 -36.09 5.40 -320.45 -1.73 -37.82 16 10 C 0.15 5.77 4.35 45.52 0.20 5.96 16 11 H 0.08 2.95 8.10 -2.38 -0.02 2.93 16 12 C -0.17 -6.16 7.68 31.12 0.24 -5.92 16 13 C 0.13 3.93 4.32 45.52 0.20 4.13 16 14 H 0.09 2.74 7.46 -2.39 -0.02 2.72 16 15 N -0.70 -16.21 5.26 -440.04 -2.32 -18.53 16 16 C 0.51 12.43 7.46 87.66 0.65 13.08 16 17 O -0.58 -19.44 13.89 -3.03 -0.04 -19.48 16 18 C -0.13 -1.94 5.13 29.85 0.15 -1.79 16 19 C -0.04 -0.73 2.11 -11.73 -0.02 -0.75 16 20 H 0.07 1.47 7.94 -2.39 -0.02 1.45 16 21 C -0.15 -3.45 8.42 27.04 0.23 -3.23 16 22 C -0.17 -3.22 9.80 27.04 0.27 -2.96 16 23 C -0.09 -1.21 6.11 29.66 0.18 -1.03 16 24 C -0.12 -1.45 6.01 30.73 0.18 -1.27 16 25 C -0.11 -1.31 5.30 30.74 0.16 -1.15 16 26 C -0.14 -4.29 7.58 31.12 0.24 -4.06 16 27 H 0.25 14.87 8.31 -92.70 -0.77 14.09 16 28 H 0.37 20.04 7.93 -92.71 -0.73 19.31 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.41 7.22 8.70 -92.70 -0.81 6.41 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 2.27 6.53 -2.91 -0.02 2.25 16 35 H 0.10 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.79 8.10 -2.39 -0.02 0.77 16 42 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 Total: -1.00 -69.77 346.73 1.65 -68.12 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.55 Total: 34.44 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 3.98 Total: -15.37 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -3.76 Total: -115.48 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.04 Total: -19.48 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.77 1.65 -68.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020283454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.968 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds