Wall clock time and date at job start Tue Mar 31 2020 00:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00268 * 2 1 4 4 H 1.48503 * 109.47062 * 270.00010 * 3 2 1 5 5 H 1.48495 * 109.47084 * 30.00007 * 3 2 1 6 6 H 1.48502 * 109.46809 * 150.00398 * 3 2 1 7 7 C 1.38816 * 119.99338 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99301 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00191 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99778 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.84877 * 23.80851 * 10 9 7 12 12 C 1.53784 * 113.61148 * 155.00157 * 10 9 7 13 13 C 1.53772 * 87.08209 * 89.11761 * 12 10 9 14 14 H 1.08999 * 113.61503 * 270.80156 * 13 12 10 15 15 N 1.46498 * 113.61679 * 139.97709 * 13 12 10 16 16 C 1.34779 * 120.00067 * 154.99743 * 15 13 12 17 17 O 1.21279 * 119.99852 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99987 * 180.02562 * 16 15 13 19 19 H 1.08996 * 109.26774 * 60.49553 * 18 16 15 20 20 C 1.52877 * 109.26662 * 301.02629 * 18 16 15 21 21 C 1.53304 * 108.58993 * 184.84131 * 20 18 16 22 22 C 1.52877 * 108.57830 * 74.44438 * 21 20 18 23 23 C 1.52540 * 110.48359 * 306.54367 * 22 21 20 24 24 H 1.09005 * 114.54528 * 230.42735 * 23 22 21 25 25 C 1.51362 * 117.53180 * 89.29141 * 23 22 21 26 26 C 1.52066 * 120.63769 * 19.25592 * 23 22 21 27 27 H 1.09002 * 115.93210 * 212.44579 * 26 23 22 28 28 C 1.53778 * 113.61538 * 252.49992 * 10 9 7 29 29 H 0.96998 * 119.99655 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00494 * 359.97438 * 9 7 2 31 31 H 1.08993 * 113.61706 * 334.56307 * 12 10 9 32 32 H 1.09007 * 113.60916 * 203.66559 * 12 10 9 33 33 H 0.97000 * 120.00111 * 335.00054 * 15 13 12 34 34 H 1.08995 * 109.61744 * 304.57799 * 20 18 16 35 35 H 1.09003 * 109.61371 * 65.11449 * 20 18 16 36 36 H 1.08995 * 109.61491 * 194.17441 * 21 20 18 37 37 H 1.09001 * 109.61505 * 314.53833 * 21 20 18 38 38 H 1.09002 * 109.35515 * 65.69136 * 22 21 20 39 39 H 1.08998 * 109.35955 * 185.40491 * 22 21 20 40 40 H 1.08998 * 117.10825 * 140.90839 * 25 23 22 41 41 H 1.08994 * 117.66883 * 356.14951 * 25 23 22 42 42 H 1.08998 * 113.61497 * 156.33751 * 28 10 9 43 43 H 1.08996 * 113.61455 * 25.42747 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 3.0653 -3.5640 0.4049 12 6 1.2598 -4.8288 0.5949 13 6 0.7202 -5.0791 -0.8231 14 1 -0.1913 -4.5250 -1.0475 15 7 0.6236 -6.4986 -1.1722 16 6 -0.2557 -6.9036 -2.1099 17 8 -0.9667 -6.0929 -2.6650 18 6 -0.3555 -8.3639 -2.4686 19 1 -0.6401 -8.9331 -1.5837 20 6 1.0036 -8.8548 -2.9677 21 6 0.8555 -10.3051 -3.4418 22 6 0.1226 -10.3066 -4.7834 23 6 -1.1888 -9.5349 -4.6762 24 1 -2.0606 -10.0690 -5.0542 25 6 -1.1513 -8.0486 -4.9595 26 6 -1.4153 -8.5452 -3.5441 27 1 -2.4421 -8.4524 -3.1904 28 6 1.9989 -4.4022 -1.3443 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 0.4935 -4.5190 1.3054 32 1 1.8867 -5.6367 0.9725 33 1 1.1924 -7.1470 -0.7285 34 1 1.3360 -8.2307 -3.7971 35 1 1.7302 -8.8073 -2.1565 36 1 1.8417 -10.7530 -3.5629 37 1 0.2830 -10.8732 -2.7084 38 1 0.7451 -9.8218 -5.5356 39 1 -0.0748 -11.3349 -5.0862 40 1 -1.9918 -7.6266 -5.5104 41 1 -0.1805 -7.5963 -5.1620 42 1 2.8277 -5.0935 -1.4969 43 1 1.8291 -3.7480 -2.1994 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020316714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:29 Heat of formation + Delta-G solvation = 4.584396 kcal Electronic energy + Delta-G solvation = -21736.996315 eV Core-core repulsion = 18589.983952 eV Total energy + Delta-G solvation = -3147.012364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63075 -39.04272 -37.57179 -34.13782 -33.42529 -32.48809 -31.19861 -29.58401 -25.64947 -25.08076 -24.31060 -23.11035 -22.56690 -21.57855 -20.25473 -18.95861 -18.40236 -17.34987 -16.90624 -16.50042 -15.79660 -15.02922 -14.84181 -14.35603 -14.07262 -13.97331 -13.69491 -13.55597 -13.11860 -12.91096 -12.67451 -12.38895 -12.02039 -11.92672 -11.63182 -11.53375 -11.31464 -11.09744 -10.86262 -10.78289 -10.57222 -10.22972 -10.18776 -10.13431 -9.96887 -9.82872 -9.69302 -9.28852 -8.89710 -8.62011 -6.99166 -5.77955 -3.07977 2.84115 3.26237 3.43959 3.48631 3.50663 3.83366 4.31627 4.50119 4.54449 4.57285 4.77463 4.88776 4.97257 5.03211 5.10507 5.19269 5.25099 5.29804 5.40104 5.41495 5.42661 5.50077 5.66132 5.75143 5.79068 5.88228 5.89795 5.93522 6.00471 6.02724 6.11043 6.12217 6.14749 6.26553 6.41264 6.66303 6.75828 6.82585 7.07433 7.69900 7.76319 8.40277 8.48117 9.50934 10.07588 10.41607 11.44282 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034910 B = 0.003223 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.877498 B = 8684.910967 C = 8979.319591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.171 3.829 11 H 0.067 0.933 12 C -0.165 4.165 13 C 0.126 3.874 14 H 0.112 0.888 15 N -0.719 5.719 16 C 0.511 3.489 17 O -0.530 6.530 18 C -0.074 4.074 19 H 0.098 0.902 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.090 4.090 23 C -0.152 4.152 24 H 0.099 0.901 25 C -0.159 4.159 26 C -0.120 4.120 27 H 0.101 0.899 28 C -0.183 4.183 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.537 -23.781 -5.438 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.085 0.915 12 C -0.205 4.205 13 C 0.022 3.978 14 H 0.130 0.870 15 N -0.370 5.370 16 C 0.297 3.703 17 O -0.406 6.406 18 C -0.095 4.095 19 H 0.116 0.884 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.127 4.127 23 C -0.170 4.170 24 H 0.117 0.883 25 C -0.196 4.196 26 C -0.139 4.139 27 H 0.120 0.880 28 C -0.226 4.226 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.228 0.772 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.110 -22.982 -5.825 23.734 hybrid contribution 0.281 0.627 0.145 0.702 sum 1.391 -22.355 -5.681 23.107 Atomic orbital electron populations 1.69671 1.05153 1.25843 1.57105 1.24788 0.95539 0.97838 1.02638 0.86161 0.78615 0.83667 0.77554 1.21642 1.21742 1.20690 1.19270 0.91093 0.83915 1.43343 0.90943 1.42198 1.05775 0.99413 1.87031 1.20914 0.95202 0.85438 0.92631 0.91453 1.23893 1.00721 0.99917 0.95938 1.22600 0.99621 0.79816 0.95768 0.87010 1.46149 1.40236 1.09717 1.40857 1.20585 0.79874 0.90425 0.79440 1.90725 1.42951 1.55159 1.51760 1.20635 0.96202 0.93629 0.99038 0.88418 1.21619 0.95048 0.96925 1.01582 1.21556 1.00408 0.96083 0.97325 1.21021 0.94602 0.99673 0.97454 1.21884 0.99403 0.92461 1.03266 0.88318 1.22609 1.03283 0.95526 0.98219 1.21316 0.99087 1.03734 0.89733 0.88046 1.24301 0.96321 0.99722 1.02239 0.93371 0.77975 0.90942 0.90402 0.77231 0.91144 0.91117 0.91509 0.91425 0.91773 0.91505 0.88976 0.88987 0.91375 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.85 9.97 -15.06 -0.15 -7.00 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.71 -17.88 5.31 -52.63 -0.28 -18.16 16 10 C 0.17 3.38 4.56 -67.12 -0.31 3.07 16 11 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 12 C -0.16 -2.63 7.58 -25.92 -0.20 -2.82 16 13 C 0.13 2.11 4.12 -67.12 -0.28 1.83 16 14 H 0.11 2.29 7.46 -51.93 -0.39 1.90 16 15 N -0.72 -9.49 5.25 -53.02 -0.28 -9.77 16 16 C 0.51 7.38 7.11 -10.98 -0.08 7.31 16 17 O -0.53 -10.20 15.27 5.56 0.08 -10.11 16 18 C -0.07 -0.76 2.59 -92.31 -0.24 -1.00 16 19 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.11 -0.96 4.81 -26.64 -0.13 -1.09 16 21 C -0.12 -0.80 5.94 -26.64 -0.16 -0.96 16 22 C -0.09 -0.67 5.86 -27.03 -0.16 -0.83 16 23 C -0.15 -1.37 6.02 -92.16 -0.56 -1.92 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.16 -1.81 9.11 -27.91 -0.25 -2.06 16 26 C -0.12 -1.32 4.76 -91.92 -0.44 -1.76 16 27 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 28 C -0.18 -3.26 7.68 -25.92 -0.20 -3.46 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.39 10.48 7.90 -40.82 -0.32 10.16 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 33 H 0.39 3.87 8.17 -40.82 -0.33 3.53 16 34 H 0.07 0.70 7.12 -51.93 -0.37 0.33 16 35 H 0.07 0.50 7.64 -51.93 -0.40 0.10 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 38 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.12 7.28 -51.93 -0.38 0.74 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -32.48 342.68 -10.06 -42.54 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -7.22 Total: 11.74 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -3.23 Total: -11.14 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.17 Total: -55.69 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.48 -10.06 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020316714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.122 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds