Wall clock time and date at job start Tue Mar 31 2020 00:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00268 * 2 1 4 4 H 1.48503 * 109.47062 * 270.00010 * 3 2 1 5 5 H 1.48495 * 109.47084 * 30.00007 * 3 2 1 6 6 H 1.48502 * 109.46809 * 150.00398 * 3 2 1 7 7 C 1.38816 * 119.99338 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99301 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00191 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99778 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.84877 * 23.80851 * 10 9 7 12 12 C 1.53784 * 113.61148 * 155.00157 * 10 9 7 13 13 C 1.53772 * 87.08209 * 89.11761 * 12 10 9 14 14 H 1.08999 * 113.61503 * 270.80156 * 13 12 10 15 15 N 1.46498 * 113.61679 * 139.97709 * 13 12 10 16 16 C 1.34779 * 120.00067 * 154.99743 * 15 13 12 17 17 O 1.21279 * 119.99852 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99987 * 180.02562 * 16 15 13 19 19 H 1.08996 * 109.26774 * 60.49553 * 18 16 15 20 20 C 1.52877 * 109.26662 * 301.02629 * 18 16 15 21 21 C 1.53304 * 108.58993 * 184.84131 * 20 18 16 22 22 C 1.52877 * 108.57830 * 74.44438 * 21 20 18 23 23 C 1.52540 * 110.48359 * 306.54367 * 22 21 20 24 24 H 1.09005 * 114.54528 * 230.42735 * 23 22 21 25 25 C 1.51362 * 117.53180 * 89.29141 * 23 22 21 26 26 C 1.52066 * 120.63769 * 19.25592 * 23 22 21 27 27 H 1.09002 * 115.93210 * 212.44579 * 26 23 22 28 28 C 1.53778 * 113.61538 * 252.49992 * 10 9 7 29 29 H 0.96998 * 119.99655 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00494 * 359.97438 * 9 7 2 31 31 H 1.08993 * 113.61706 * 334.56307 * 12 10 9 32 32 H 1.09007 * 113.60916 * 203.66559 * 12 10 9 33 33 H 0.97000 * 120.00111 * 335.00054 * 15 13 12 34 34 H 1.08995 * 109.61744 * 304.57799 * 20 18 16 35 35 H 1.09003 * 109.61371 * 65.11449 * 20 18 16 36 36 H 1.08995 * 109.61491 * 194.17441 * 21 20 18 37 37 H 1.09001 * 109.61505 * 314.53833 * 21 20 18 38 38 H 1.09002 * 109.35515 * 65.69136 * 22 21 20 39 39 H 1.08998 * 109.35955 * 185.40491 * 22 21 20 40 40 H 1.08998 * 117.10825 * 140.90839 * 25 23 22 41 41 H 1.08994 * 117.66883 * 356.14951 * 25 23 22 42 42 H 1.08998 * 113.61497 * 156.33751 * 28 10 9 43 43 H 1.08996 * 113.61455 * 25.42747 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 3.0653 -3.5640 0.4049 12 6 1.2598 -4.8288 0.5949 13 6 0.7202 -5.0791 -0.8231 14 1 -0.1913 -4.5250 -1.0475 15 7 0.6236 -6.4986 -1.1722 16 6 -0.2557 -6.9036 -2.1099 17 8 -0.9667 -6.0929 -2.6650 18 6 -0.3555 -8.3639 -2.4686 19 1 -0.6401 -8.9331 -1.5837 20 6 1.0036 -8.8548 -2.9677 21 6 0.8555 -10.3051 -3.4418 22 6 0.1226 -10.3066 -4.7834 23 6 -1.1888 -9.5349 -4.6762 24 1 -2.0606 -10.0690 -5.0542 25 6 -1.1513 -8.0486 -4.9595 26 6 -1.4153 -8.5452 -3.5441 27 1 -2.4421 -8.4524 -3.1904 28 6 1.9989 -4.4022 -1.3443 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 0.4935 -4.5190 1.3054 32 1 1.8867 -5.6367 0.9725 33 1 1.1924 -7.1470 -0.7285 34 1 1.3360 -8.2307 -3.7971 35 1 1.7302 -8.8073 -2.1565 36 1 1.8417 -10.7530 -3.5629 37 1 0.2830 -10.8732 -2.7084 38 1 0.7451 -9.8218 -5.5356 39 1 -0.0748 -11.3349 -5.0862 40 1 -1.9918 -7.6266 -5.5104 41 1 -0.1805 -7.5963 -5.1620 42 1 2.8277 -5.0935 -1.4969 43 1 1.8291 -3.7480 -2.1994 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020316714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:29 Heat of formation + Delta-G solvation = -16.692210 kcal Electronic energy + Delta-G solvation = -21737.918938 eV Core-core repulsion = 18589.983952 eV Total energy + Delta-G solvation = -3147.934987 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63323 -40.25797 -38.85701 -35.74542 -34.64637 -33.70382 -32.20756 -31.36175 -26.67536 -26.49961 -25.95485 -24.56352 -23.41799 -22.59756 -21.31253 -20.28961 -19.35663 -19.33105 -17.93531 -17.53573 -17.06278 -16.65595 -16.03269 -15.77840 -15.45869 -15.00098 -14.81914 -14.66574 -14.33941 -14.21828 -13.81841 -13.53872 -13.32701 -13.28740 -13.02220 -12.80620 -12.59851 -12.29418 -12.18140 -12.05578 -11.82381 -11.77371 -11.70871 -11.33703 -11.22562 -11.06296 -10.90239 -10.73767 -10.38905 -9.92396 -9.04408 -7.96998 -5.27000 1.46012 1.48644 1.56992 1.70107 2.19742 2.54336 2.94951 3.35009 3.54212 3.64912 3.75654 3.78999 3.86352 3.90821 4.02751 4.10612 4.25226 4.28746 4.30438 4.35286 4.53981 4.57786 4.67606 4.75434 4.81638 4.84051 4.89343 5.01020 5.08381 5.11596 5.16129 5.18407 5.25444 5.30665 5.32621 5.33889 5.38323 5.50443 5.52045 5.71848 6.25482 6.68172 7.29721 7.38827 8.06227 8.27469 9.26684 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034910 B = 0.003223 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.877498 B = 8684.910967 C = 8979.319591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.150 3.850 11 H 0.079 0.921 12 C -0.137 4.137 13 C 0.131 3.869 14 H 0.065 0.935 15 N -0.701 5.701 16 C 0.505 3.495 17 O -0.588 6.588 18 C -0.063 4.063 19 H 0.126 0.874 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.123 4.123 24 H 0.110 0.890 25 C -0.184 4.184 26 C -0.136 4.136 27 H 0.090 0.910 28 C -0.170 4.170 29 H 0.251 0.749 30 H 0.371 0.629 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.417 0.583 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -26.936 -4.646 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.375 4.375 8 H 0.101 0.899 9 N -0.362 5.362 10 C 0.039 3.961 11 H 0.097 0.903 12 C -0.177 4.177 13 C 0.026 3.974 14 H 0.083 0.917 15 N -0.353 5.353 16 C 0.293 3.707 17 O -0.467 6.467 18 C -0.084 4.084 19 H 0.144 0.856 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.130 4.130 23 C -0.141 4.141 24 H 0.128 0.872 25 C -0.221 4.221 26 C -0.154 4.154 27 H 0.108 0.892 28 C -0.212 4.212 29 H 0.059 0.941 30 H 0.202 0.798 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.255 0.745 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.513 -26.221 -5.013 26.926 hybrid contribution -0.436 1.538 -0.147 1.606 sum 3.076 -24.683 -5.160 25.404 Atomic orbital electron populations 1.69848 1.06870 1.26134 1.59478 1.25666 0.96391 1.01474 1.03665 0.85083 0.77855 0.79161 0.77322 1.21701 1.22282 1.18768 1.19731 0.91712 0.85020 1.41078 0.89924 1.42412 1.05310 1.00981 1.87491 1.21265 0.95790 0.84577 0.94465 0.90308 1.23734 1.00047 0.99182 0.94721 1.22126 0.97243 0.81469 0.96581 0.91714 1.45893 1.40341 1.08512 1.40568 1.21454 0.78760 0.91982 0.78485 1.90711 1.45184 1.57107 1.53730 1.20669 0.97430 0.90453 0.99869 0.85650 1.21663 0.93916 0.97711 1.01683 1.21560 1.01516 0.94857 0.96890 1.21113 0.93474 1.00335 0.98113 1.21985 1.00909 0.90931 1.00297 0.87155 1.22574 1.02203 0.98123 0.99177 1.21405 0.98927 1.05154 0.89939 0.89220 1.24167 0.98084 0.99506 0.99427 0.94053 0.79769 0.92220 0.85454 0.74518 0.93088 0.88865 0.89691 0.90160 0.92204 0.89505 0.90057 0.90372 0.87544 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.79 13.06 21.65 0.28 -61.51 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 3 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.24 -13.77 9.97 84.03 0.84 -12.93 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.72 -37.57 5.31 -320.44 -1.70 -39.27 16 10 C 0.15 5.76 4.56 45.52 0.21 5.97 16 11 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 12 C -0.14 -4.09 7.58 31.12 0.24 -3.86 16 13 C 0.13 4.37 4.12 45.52 0.19 4.55 16 14 H 0.06 2.82 7.46 -2.39 -0.02 2.81 16 15 N -0.70 -17.22 5.25 -440.04 -2.31 -19.52 16 16 C 0.51 14.40 7.11 87.66 0.62 15.02 16 17 O -0.59 -23.76 15.27 -3.03 -0.05 -23.81 16 18 C -0.06 -1.19 2.59 -11.89 -0.03 -1.22 16 19 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 20 C -0.11 -1.55 4.81 30.66 0.15 -1.40 16 21 C -0.11 -1.09 5.94 30.66 0.18 -0.90 16 22 C -0.09 -1.12 5.86 30.40 0.18 -0.94 16 23 C -0.12 -2.03 6.02 -11.79 -0.07 -2.10 16 24 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 25 C -0.18 -4.32 9.11 29.83 0.27 -4.05 16 26 C -0.14 -2.92 4.76 -11.64 -0.06 -2.97 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 C -0.17 -5.92 7.68 31.12 0.24 -5.68 16 29 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.37 21.13 7.90 -92.71 -0.73 20.40 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.13 2.58 8.12 -2.38 -0.02 2.56 16 33 H 0.42 6.45 8.17 -92.71 -0.76 5.69 16 34 H 0.05 0.92 7.12 -2.39 -0.02 0.91 16 35 H 0.09 0.88 7.64 -2.39 -0.02 0.86 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.64 8.05 -2.39 -0.02 0.62 16 38 H 0.06 0.80 8.06 -2.39 -0.02 0.78 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.02 7.28 -2.39 -0.02 2.00 16 42 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -75.60 342.68 1.19 -74.41 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.48 Total: 35.41 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.42 Total: -14.75 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -3.73 Total: -120.31 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -75.60 1.19 -74.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020316714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.719 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds