Wall clock time and date at job start Tue Mar 31 2020 00:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00078 * 2 1 4 4 H 1.48493 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47186 * 300.00682 * 3 2 1 6 6 H 1.48500 * 109.46859 * 60.00584 * 3 2 1 7 7 C 1.38817 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99518 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85074 * 336.19921 * 10 9 7 12 12 C 1.53782 * 113.61142 * 107.50245 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.18830 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 N 1.46501 * 113.66387 * 139.88885 * 13 12 10 16 16 C 1.34773 * 120.00122 * 107.55425 * 15 13 12 17 17 O 1.21289 * 119.99571 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00316 * 179.97438 * 16 15 13 19 19 C 1.53003 * 109.47285 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.63686 * 54.58678 * 19 18 16 21 21 C 1.53022 * 109.64501 * 293.94762 * 19 18 16 22 22 C 1.50065 * 110.14464 * 190.87698 * 21 19 18 23 23 C 1.29438 * 124.07915 * 17.13371 * 22 21 19 24 24 C 1.50067 * 124.07746 * 359.52885 * 23 22 21 25 25 C 1.53030 * 110.14536 * 17.12797 * 24 23 22 26 26 C 1.53781 * 113.61619 * 205.00090 * 10 9 7 27 27 H 0.96993 * 120.00291 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 29 29 H 1.08997 * 113.61668 * 203.66381 * 12 10 9 30 30 H 1.08998 * 113.61674 * 334.48890 * 12 10 9 31 31 H 0.97002 * 119.99797 * 287.54884 * 15 13 12 32 32 H 1.09002 * 109.47503 * 300.00170 * 18 16 15 33 33 H 1.09005 * 109.47302 * 60.00162 * 18 16 15 34 34 H 1.09001 * 109.35431 * 311.08711 * 21 19 18 35 35 H 1.08997 * 109.35488 * 70.66733 * 21 19 18 36 36 H 1.08005 * 117.96011 * 197.15139 * 22 21 19 37 37 H 1.07999 * 117.96273 * 179.50450 * 23 22 21 38 38 H 1.09001 * 109.35987 * 256.92909 * 24 23 22 39 39 H 1.08996 * 109.36268 * 137.33555 * 24 23 22 40 40 H 1.08998 * 109.64114 * 190.88132 * 25 24 23 41 41 H 1.08999 * 109.63611 * 70.25377 * 25 24 23 42 42 H 1.09002 * 113.61445 * 25.43587 * 26 10 9 43 43 H 1.09002 * 113.61408 * 156.25317 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0653 -3.5637 -0.4078 12 6 2.0001 -4.4027 1.3419 13 6 0.7205 -5.0821 0.8207 14 1 -0.1908 -4.5285 1.0467 15 7 0.6258 -6.5023 1.1673 16 6 -0.2527 -6.9102 2.1044 17 8 -0.9647 -6.1013 2.6610 18 6 -0.3505 -8.3712 2.4605 19 6 -1.4150 -8.5622 3.5428 20 1 -2.3576 -8.1276 3.2102 21 6 -0.9596 -7.8851 4.8374 22 6 -1.8567 -8.2839 5.9724 23 6 -2.6514 -9.3052 5.9444 24 6 -2.7943 -10.2274 4.7692 25 6 -1.6064 -10.0588 3.8193 26 6 1.2597 -4.8286 -0.5971 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.8290 -5.0940 1.4937 30 1 1.8323 -3.7487 2.1975 31 1 1.1955 -7.1492 0.7222 32 1 -0.6258 -8.9435 1.5746 33 1 0.6127 -8.7196 2.8333 34 1 0.0634 -8.1866 5.0622 35 1 -0.9958 -6.8031 4.7112 36 1 -1.8382 -7.6810 6.8683 37 1 -3.2485 -9.5064 6.8215 38 1 -3.7174 -9.9953 4.2379 39 1 -2.8319 -11.2583 5.1212 40 1 -1.8079 -10.5814 2.8842 41 1 -0.7067 -10.4638 4.2825 42 1 0.4928 -4.5184 -1.3069 43 1 1.8863 -5.6356 -0.9767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020473017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:13 Heat of formation + Delta-G solvation = -9.627169 kcal Electronic energy + Delta-G solvation = -21285.016314 eV Core-core repulsion = 18137.387691 eV Total energy + Delta-G solvation = -3147.628623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08756 -38.74660 -37.60962 -33.99121 -32.98059 -32.45771 -30.87433 -29.74153 -27.51590 -25.08722 -24.32931 -23.39792 -22.74004 -21.38925 -20.15746 -18.69039 -18.09712 -17.36217 -16.75716 -16.21689 -15.80637 -15.14350 -14.86549 -14.51739 -14.24123 -13.94681 -13.50446 -13.23927 -12.92283 -12.83371 -12.67615 -12.46337 -12.24622 -12.06885 -11.97504 -11.64351 -11.59116 -10.89012 -10.83785 -10.78367 -10.69648 -10.28154 -10.23106 -10.12184 -9.84648 -9.70782 -9.42415 -9.04965 -8.91036 -8.63493 -6.99743 -5.78665 -3.08675 2.21083 2.81880 3.39569 3.43177 3.48435 3.51090 4.48707 4.54733 4.56741 4.66234 4.91906 5.00339 5.08883 5.18100 5.22245 5.26566 5.33057 5.41380 5.45243 5.49208 5.52284 5.57375 5.66109 5.69235 5.81336 5.88944 6.01128 6.04499 6.10230 6.16976 6.26959 6.30325 6.40690 6.56282 6.65138 6.74729 6.81179 6.88875 7.06287 7.69746 7.74151 8.39530 8.45495 9.50298 10.06889 10.40840 11.43622 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.002979 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.667925 B = 9396.029992 C = 9921.759688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.171 3.829 11 H 0.067 0.933 12 C -0.183 4.183 13 C 0.125 3.875 14 H 0.112 0.888 15 N -0.720 5.720 16 C 0.506 3.494 17 O -0.535 6.535 18 C -0.138 4.138 19 C -0.071 4.071 20 H 0.081 0.919 21 C -0.094 4.094 22 C -0.142 4.142 23 C -0.170 4.170 24 C -0.088 4.088 25 C -0.116 4.116 26 C -0.165 4.165 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.395 0.605 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -23.288 6.031 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.085 0.915 12 C -0.226 4.226 13 C 0.021 3.979 14 H 0.130 0.870 15 N -0.370 5.370 16 C 0.293 3.707 17 O -0.412 6.412 18 C -0.178 4.178 19 C -0.090 4.090 20 H 0.099 0.901 21 C -0.131 4.131 22 C -0.160 4.160 23 C -0.188 4.188 24 C -0.125 4.125 25 C -0.153 4.153 26 C -0.205 4.205 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.228 0.772 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.248 -22.507 6.422 23.438 hybrid contribution 0.380 0.571 -0.051 0.688 sum -0.868 -21.935 6.372 22.859 Atomic orbital electron populations 1.69677 1.05147 1.25741 1.57187 1.24792 0.95544 0.97851 1.02660 0.86092 0.78765 0.83961 0.77200 1.20492 1.21820 1.21802 1.19313 0.91120 0.83895 1.43205 0.90890 1.42207 1.05781 0.99424 1.87017 1.20911 0.95201 0.85435 0.92634 0.91450 1.24335 0.96305 0.99705 1.02255 1.22632 0.99652 0.79813 0.95819 0.86964 1.46167 1.40204 1.09766 1.40895 1.20693 0.79789 0.90856 0.79400 1.90705 1.43087 1.55645 1.51747 1.21782 1.01513 0.93863 1.00605 1.20951 0.98729 0.95176 0.94109 0.90056 1.20645 0.97707 1.02705 0.92010 1.22126 0.97753 0.97068 0.99091 1.21978 1.00543 0.97374 0.98946 1.20406 0.98698 0.98521 0.94902 1.21683 0.98526 0.95919 0.99202 1.23891 1.00722 0.99920 0.95927 0.93415 0.77976 0.91389 0.91123 0.77160 0.89053 0.89129 0.91460 0.88860 0.88190 0.88360 0.91044 0.91355 0.91667 0.91760 0.90961 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.71 -17.78 5.31 -52.63 -0.28 -18.06 16 10 C 0.17 3.35 4.56 -67.12 -0.31 3.05 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 C -0.18 -3.23 7.68 -25.82 -0.20 -3.43 16 13 C 0.12 2.06 4.13 -67.02 -0.28 1.78 16 14 H 0.11 2.26 7.47 -51.93 -0.39 1.88 16 15 N -0.72 -9.20 5.36 -52.93 -0.28 -9.49 16 16 C 0.51 6.94 7.59 -10.99 -0.08 6.86 16 17 O -0.54 -9.79 13.70 5.55 0.08 -9.71 16 18 C -0.14 -1.28 5.17 -27.89 -0.14 -1.42 16 19 C -0.07 -0.73 1.87 -90.40 -0.17 -0.90 16 20 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 21 C -0.09 -1.08 5.05 -28.18 -0.14 -1.22 16 22 C -0.14 -1.52 9.80 -35.90 -0.35 -1.87 16 23 C -0.17 -1.62 9.80 -35.90 -0.35 -1.97 16 24 C -0.09 -0.72 6.12 -28.17 -0.17 -0.89 16 25 C -0.12 -0.92 5.31 -26.51 -0.14 -1.06 16 26 C -0.16 -2.60 7.57 -25.92 -0.20 -2.79 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.39 10.42 7.90 -40.82 -0.32 10.10 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.39 3.67 8.73 -40.82 -0.36 3.32 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 35 H 0.09 1.35 6.30 -51.93 -0.33 1.02 16 36 H 0.10 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.49 8.12 -51.93 -0.42 0.06 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -32.31 346.51 -9.60 -41.91 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -7.26 Total: 11.62 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.78 Total: -11.27 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.16 Total: -55.22 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.31 -9.60 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020473017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.288 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds