Wall clock time and date at job start Tue Mar 31 2020 00:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 12 12 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 13 13 C 1.53781 * 87.08232 * 139.97914 * 12 10 9 14 14 H 1.09005 * 113.61867 * 220.02192 * 13 12 10 15 15 N 1.46504 * 113.61534 * 89.11755 * 13 12 10 16 16 C 1.34773 * 119.99891 * 154.99962 * 15 13 12 17 17 O 1.21273 * 120.00058 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99600 * 180.02562 * 16 15 13 19 19 C 1.52308 * 115.91307 * 248.60990 * 18 16 15 20 20 C 1.52068 * 115.93026 * 180.32140 * 18 16 15 21 21 H 1.09002 * 117.25214 * 359.36516 * 20 18 16 22 22 C 1.52709 * 120.52474 * 210.74251 * 20 18 16 23 23 C 1.52871 * 110.15460 * 21.46542 * 22 20 18 24 24 C 1.53306 * 108.58322 * 305.48511 * 23 22 20 25 25 C 1.51663 * 108.14782 * 74.54121 * 24 23 22 26 26 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.08994 * 113.61573 * 254.52493 * 12 10 9 30 30 H 1.09004 * 113.61217 * 25.35286 * 12 10 9 31 31 H 0.96995 * 119.99582 * 335.00014 * 15 13 12 32 32 H 1.08995 * 117.53769 * 0.84840 * 19 18 16 33 33 H 1.09003 * 117.53830 * 146.02867 * 19 18 16 34 34 H 1.09004 * 109.36183 * 141.67864 * 22 20 18 35 35 H 1.09003 * 109.35769 * 261.25894 * 22 20 18 36 36 H 1.09003 * 109.61854 * 65.20561 * 23 22 20 37 37 H 1.09004 * 109.62270 * 185.57043 * 23 22 20 38 38 H 1.08995 * 109.61712 * 194.17325 * 24 23 22 39 39 H 1.09002 * 109.61220 * 314.52373 * 24 23 22 40 40 H 1.09008 * 108.15089 * 184.51197 * 25 24 23 41 41 H 1.09001 * 109.71901 * 65.45497 * 25 24 23 42 42 H 1.08999 * 113.61640 * 334.56560 * 26 10 9 43 43 H 1.08997 * 113.61899 * 105.47187 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0652 -3.5640 0.4046 12 6 1.2597 -4.8290 0.5929 13 6 1.8482 -5.6974 -0.5316 14 1 1.1339 -6.4008 -0.9596 15 7 3.1256 -6.3237 -0.1820 16 6 3.5109 -7.4584 -0.7988 17 8 2.8004 -7.9607 -1.6435 18 6 4.8246 -8.1030 -0.4386 19 6 5.9030 -8.0618 -1.5135 20 6 5.1710 -9.3751 -1.1964 21 1 4.4478 -9.7317 -1.9299 22 6 6.0096 -10.4672 -0.5362 23 6 5.9403 -10.3371 0.9854 24 6 6.3543 -8.9129 1.3733 25 6 5.2117 -7.9778 1.0267 26 6 1.9999 -4.4015 -1.3458 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.5905 -5.1219 1.5892 30 1 0.1793 -4.6998 0.5264 31 1 3.6940 -5.9217 0.4934 32 1 5.6603 -7.5635 -2.4519 33 1 6.9383 -7.9689 -1.1853 34 1 5.6286 -11.4445 -0.8329 35 1 7.0461 -10.3724 -0.8600 36 1 4.9213 -10.5266 1.3229 37 1 6.6179 -11.0563 1.4456 38 1 6.5547 -8.8688 2.4437 39 1 7.2505 -8.6293 0.8213 40 1 5.5359 -6.9565 1.2270 41 1 4.3464 -8.2082 1.6482 42 1 1.1221 -4.1561 -1.9434 43 1 2.9284 -4.3494 -1.9144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020566441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:05 Heat of formation + Delta-G solvation = 2.871378 kcal Electronic energy + Delta-G solvation = -21748.255802 eV Core-core repulsion = 18601.169156 eV Total energy + Delta-G solvation = -3147.086646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91827 -39.14484 -37.56231 -34.33414 -33.35885 -32.87400 -31.06105 -29.57189 -25.43747 -25.20404 -24.59473 -23.67245 -22.28614 -21.67269 -20.82962 -19.02404 -18.66819 -17.67505 -17.27937 -15.97824 -15.31656 -15.19584 -14.68904 -14.62147 -14.27252 -14.22671 -13.89526 -13.63464 -13.49200 -13.14764 -12.71280 -12.42773 -12.27743 -12.07166 -11.98838 -11.55348 -11.30541 -11.17655 -10.84363 -10.81246 -10.58018 -10.33656 -10.22876 -10.09919 -9.96047 -9.91130 -9.66278 -9.17362 -8.93849 -8.80548 -7.07432 -6.14484 -3.14668 2.50122 3.12374 3.49464 3.52948 3.56144 3.70576 4.28490 4.35638 4.47025 4.58117 4.65091 4.74861 4.92221 4.92996 4.97869 5.13989 5.17298 5.22630 5.31839 5.36214 5.47753 5.49482 5.54296 5.59299 5.78145 5.79705 5.80437 5.80738 5.81914 5.91245 5.99627 6.04751 6.11177 6.14581 6.21711 6.45653 6.55145 6.60171 6.99323 7.58659 7.76630 8.27623 8.71352 9.17834 10.04200 10.19079 11.33669 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030645 B = 0.003275 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.477119 B = 8546.509419 C = 8869.027570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.173 3.827 11 H 0.075 0.925 12 C -0.161 4.161 13 C 0.116 3.884 14 H 0.095 0.905 15 N -0.701 5.701 16 C 0.547 3.453 17 O -0.544 6.544 18 C -0.143 4.143 19 C -0.153 4.153 20 C -0.116 4.116 21 H 0.115 0.885 22 C -0.089 4.089 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.084 4.084 26 C -0.176 4.176 27 H 0.255 0.745 28 H 0.369 0.631 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.401 0.599 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.334 -20.473 2.333 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.363 5.363 10 C 0.060 3.940 11 H 0.093 0.907 12 C -0.201 4.201 13 C 0.011 3.989 14 H 0.113 0.887 15 N -0.351 5.351 16 C 0.333 3.667 17 O -0.421 6.421 18 C -0.147 4.147 19 C -0.191 4.191 20 C -0.135 4.135 21 H 0.133 0.867 22 C -0.126 4.126 23 C -0.160 4.160 24 C -0.157 4.157 25 C -0.121 4.121 26 C -0.218 4.218 27 H 0.067 0.933 28 H 0.202 0.798 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.235 0.765 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.865 -19.083 1.743 23.080 hybrid contribution 0.107 -1.389 0.234 1.413 sum 12.971 -20.472 1.977 24.316 Atomic orbital electron populations 1.70889 1.06062 1.28479 1.53286 1.25810 0.97043 1.01103 1.00220 0.83244 0.74244 0.75574 0.75876 1.20988 1.22218 1.22215 1.20092 0.92056 0.85898 1.48758 0.91703 1.42406 1.04797 1.00860 1.88253 1.21553 0.95034 0.84652 0.92718 0.90742 1.23865 1.01426 0.97404 0.97358 1.21803 0.85118 0.94030 0.97982 0.88653 1.45641 1.21858 1.25539 1.42083 1.19608 0.86140 0.80136 0.80818 1.90672 1.54749 1.63745 1.32958 1.21058 0.95098 1.03249 0.95265 1.23204 0.96246 1.01300 0.98305 1.22261 1.01294 0.88627 1.01301 0.86652 1.21094 0.99140 0.97364 0.95052 1.21604 1.01900 0.96780 0.95668 1.21385 0.97936 0.95010 1.01354 1.20618 0.99097 1.00512 0.91919 1.24288 1.01949 0.95357 1.00199 0.93349 0.79755 0.91682 0.89220 0.76467 0.88362 0.87765 0.91332 0.91359 0.91589 0.91784 0.91278 0.91510 0.91128 0.90856 0.89772 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.12 13.70 55.49 0.76 -28.36 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 3 Si 1.08 25.78 29.92 -169.99 -5.09 20.70 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.34 -9.44 9.97 -15.06 -0.15 -9.59 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -18.02 5.40 -52.64 -0.28 -18.31 16 10 C 0.17 3.38 4.36 -67.12 -0.29 3.08 16 11 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 12 C -0.16 -2.58 7.58 -25.92 -0.20 -2.78 16 13 C 0.12 1.81 4.32 -67.11 -0.29 1.52 16 14 H 0.10 1.57 7.47 -51.93 -0.39 1.19 16 15 N -0.70 -9.47 5.16 -53.01 -0.27 -9.75 16 16 C 0.55 7.77 7.26 -10.99 -0.08 7.70 16 17 O -0.54 -9.73 15.67 5.56 0.09 -9.64 16 18 C -0.14 -1.53 2.49 -156.96 -0.39 -1.92 16 19 C -0.15 -1.48 9.29 -26.75 -0.25 -1.73 16 20 C -0.12 -1.16 5.66 -90.90 -0.51 -1.67 16 21 H 0.12 1.36 7.50 -51.93 -0.39 0.97 16 22 C -0.09 -0.67 5.83 -26.95 -0.16 -0.82 16 23 C -0.12 -0.85 5.92 -26.64 -0.16 -1.01 16 24 C -0.12 -0.82 5.69 -27.25 -0.16 -0.98 16 25 C -0.08 -0.71 4.63 -27.88 -0.13 -0.84 16 26 C -0.18 -3.18 7.68 -25.91 -0.20 -3.38 16 27 H 0.26 7.75 6.77 -40.82 -0.28 7.47 16 28 H 0.37 9.45 6.75 -40.82 -0.28 9.18 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 31 H 0.40 4.62 7.72 -40.82 -0.32 4.30 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.81 7.27 -51.93 -0.38 0.43 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16 36 H 0.07 0.51 8.03 -51.93 -0.42 0.10 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.44 7.12 -51.93 -0.37 0.07 16 40 H 0.07 0.54 7.81 -51.92 -0.41 0.14 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -32.86 341.01 -9.78 -42.63 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.06 Total: 11.37 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.06 Total: -13.79 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.20 Total: -56.41 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.09 Total: 20.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.86 -9.78 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020566441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.503 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds