Wall clock time and date at job start Tue Mar 31 2020 00:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 12 12 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 13 13 C 1.53781 * 87.08232 * 139.97914 * 12 10 9 14 14 H 1.09005 * 113.61867 * 220.02192 * 13 12 10 15 15 N 1.46504 * 113.61534 * 89.11755 * 13 12 10 16 16 C 1.34773 * 119.99891 * 154.99962 * 15 13 12 17 17 O 1.21273 * 120.00058 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99600 * 180.02562 * 16 15 13 19 19 C 1.52308 * 115.91307 * 248.60990 * 18 16 15 20 20 C 1.52068 * 115.93026 * 180.32140 * 18 16 15 21 21 H 1.09002 * 117.25214 * 359.36516 * 20 18 16 22 22 C 1.52709 * 120.52474 * 210.74251 * 20 18 16 23 23 C 1.52871 * 110.15460 * 21.46542 * 22 20 18 24 24 C 1.53306 * 108.58322 * 305.48511 * 23 22 20 25 25 C 1.51663 * 108.14782 * 74.54121 * 24 23 22 26 26 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.08994 * 113.61573 * 254.52493 * 12 10 9 30 30 H 1.09004 * 113.61217 * 25.35286 * 12 10 9 31 31 H 0.96995 * 119.99582 * 335.00014 * 15 13 12 32 32 H 1.08995 * 117.53769 * 0.84840 * 19 18 16 33 33 H 1.09003 * 117.53830 * 146.02867 * 19 18 16 34 34 H 1.09004 * 109.36183 * 141.67864 * 22 20 18 35 35 H 1.09003 * 109.35769 * 261.25894 * 22 20 18 36 36 H 1.09003 * 109.61854 * 65.20561 * 23 22 20 37 37 H 1.09004 * 109.62270 * 185.57043 * 23 22 20 38 38 H 1.08995 * 109.61712 * 194.17325 * 24 23 22 39 39 H 1.09002 * 109.61220 * 314.52373 * 24 23 22 40 40 H 1.09008 * 108.15089 * 184.51197 * 25 24 23 41 41 H 1.09001 * 109.71901 * 65.45497 * 25 24 23 42 42 H 1.08999 * 113.61640 * 334.56560 * 26 10 9 43 43 H 1.08997 * 113.61899 * 105.47187 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0652 -3.5640 0.4046 12 6 1.2597 -4.8290 0.5929 13 6 1.8482 -5.6974 -0.5316 14 1 1.1339 -6.4008 -0.9596 15 7 3.1256 -6.3237 -0.1820 16 6 3.5109 -7.4584 -0.7988 17 8 2.8004 -7.9607 -1.6435 18 6 4.8246 -8.1030 -0.4386 19 6 5.9030 -8.0618 -1.5135 20 6 5.1710 -9.3751 -1.1964 21 1 4.4478 -9.7317 -1.9299 22 6 6.0096 -10.4672 -0.5362 23 6 5.9403 -10.3371 0.9854 24 6 6.3543 -8.9129 1.3733 25 6 5.2117 -7.9778 1.0267 26 6 1.9999 -4.4015 -1.3458 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.5905 -5.1219 1.5892 30 1 0.1793 -4.6998 0.5264 31 1 3.6940 -5.9217 0.4934 32 1 5.6603 -7.5635 -2.4519 33 1 6.9383 -7.9689 -1.1853 34 1 5.6286 -11.4445 -0.8329 35 1 7.0461 -10.3724 -0.8600 36 1 4.9213 -10.5266 1.3229 37 1 6.6179 -11.0563 1.4456 38 1 6.5547 -8.8688 2.4437 39 1 7.2505 -8.6293 0.8213 40 1 5.5359 -6.9565 1.2270 41 1 4.3464 -8.2082 1.6482 42 1 1.1221 -4.1561 -1.9434 43 1 2.9284 -4.3494 -1.9144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020566441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:04 Heat of formation + Delta-G solvation = -17.692464 kcal Electronic energy + Delta-G solvation = -21749.147517 eV Core-core repulsion = 18601.169156 eV Total energy + Delta-G solvation = -3147.978361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.90612 -40.36543 -38.77412 -36.15439 -34.32958 -34.03108 -31.99243 -31.28643 -26.71046 -26.55812 -25.75647 -25.01755 -23.80205 -22.39910 -21.77404 -20.46094 -19.66234 -19.29511 -18.46775 -17.33490 -16.86555 -16.28647 -16.02838 -15.81206 -15.45917 -15.31519 -14.88834 -14.83888 -14.60096 -14.26388 -13.76650 -13.61556 -13.47421 -13.30607 -12.97852 -12.85559 -12.65547 -12.46224 -11.93496 -11.91039 -11.87239 -11.76483 -11.64900 -11.48060 -11.12441 -10.98283 -10.87125 -10.69099 -10.66170 -10.12574 -9.12707 -8.40654 -5.35081 1.40504 1.58484 1.68368 1.84586 2.01477 2.71324 2.72990 3.36036 3.48121 3.56524 3.64042 3.67799 3.74053 3.76168 3.84751 4.10779 4.14881 4.19024 4.26899 4.35888 4.51839 4.57376 4.60363 4.71650 4.76282 4.77351 4.79872 4.97213 4.99809 5.00104 5.07065 5.10819 5.13591 5.23422 5.27750 5.33357 5.38486 5.51729 5.55537 5.61304 6.46870 6.48296 7.07243 7.15058 7.97482 8.09477 9.11119 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030645 B = 0.003275 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.477119 B = 8546.509419 C = 8869.027570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.105 4.105 3 Si 1.127 2.873 4 H -0.295 1.295 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.336 4.336 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.159 3.841 11 H 0.081 0.919 12 C -0.142 4.142 13 C 0.134 3.866 14 H 0.089 0.911 15 N -0.692 5.692 16 C 0.542 3.458 17 O -0.586 6.586 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.119 4.119 21 H 0.089 0.911 22 C -0.085 4.085 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.083 4.083 26 C -0.172 4.172 27 H 0.244 0.756 28 H 0.361 0.639 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.413 0.587 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.958 -21.355 3.582 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.296 4.296 3 Si 0.952 3.048 4 H -0.221 1.221 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.467 4.467 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.049 3.951 11 H 0.099 0.901 12 C -0.181 4.181 13 C 0.027 3.973 14 H 0.107 0.893 15 N -0.343 5.343 16 C 0.330 3.670 17 O -0.467 6.467 18 C -0.150 4.150 19 C -0.182 4.182 20 C -0.138 4.138 21 H 0.107 0.893 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.120 4.120 26 C -0.215 4.215 27 H 0.055 0.945 28 H 0.193 0.807 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.250 0.750 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.541 -20.019 3.013 25.522 hybrid contribution -0.707 -1.210 -0.216 1.418 sum 14.834 -21.229 2.797 26.049 Atomic orbital electron populations 1.70998 1.07260 1.27936 1.56230 1.27230 0.97101 1.04792 1.00505 0.82635 0.73395 0.71553 0.77216 1.22075 1.19980 1.20544 1.20462 0.92492 0.87097 1.46650 0.91249 1.42606 1.04652 1.01891 1.88727 1.21877 0.95539 0.83616 0.94042 0.90068 1.23674 1.00906 0.95052 0.98517 1.21494 0.86015 0.92864 0.96922 0.89337 1.45554 1.21198 1.25339 1.42188 1.20309 0.87033 0.79794 0.79866 1.90654 1.56341 1.64835 1.34828 1.21087 0.93375 1.03483 0.97008 1.23284 0.97167 1.00580 0.97209 1.22294 1.01182 0.89419 1.00909 0.89254 1.21117 0.99374 0.96359 0.95408 1.21611 1.01704 0.97487 0.95090 1.21398 0.97387 0.94225 1.02342 1.20666 0.99733 1.01748 0.89864 1.24147 1.01092 0.96762 0.99455 0.94541 0.80673 0.89363 0.89422 0.74979 0.89936 0.85115 0.91086 0.89768 0.92768 0.90081 0.89944 0.90567 0.90077 0.91271 0.91280 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.34 13.70 21.65 0.30 -61.04 16 2 C -0.11 -6.10 5.50 84.86 0.47 -5.63 16 3 Si 1.13 51.58 29.92 68.60 2.05 53.63 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.34 -18.72 9.97 84.03 0.84 -17.88 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.74 -36.97 5.40 -320.46 -1.73 -38.70 16 10 C 0.16 6.11 4.36 45.52 0.20 6.31 16 11 H 0.08 3.00 8.10 -2.39 -0.02 2.99 16 12 C -0.14 -4.38 7.58 31.12 0.24 -4.14 16 13 C 0.13 4.07 4.32 45.52 0.20 4.27 16 14 H 0.09 2.91 7.47 -2.38 -0.02 2.89 16 15 N -0.69 -17.84 5.16 -440.02 -2.27 -20.11 16 16 C 0.54 15.11 7.26 87.66 0.64 15.75 16 17 O -0.59 -21.32 15.67 -3.01 -0.05 -21.37 16 18 C -0.15 -2.90 2.49 -53.77 -0.13 -3.04 16 19 C -0.15 -2.56 9.29 30.58 0.28 -2.27 16 20 C -0.12 -2.26 5.66 -10.98 -0.06 -2.32 16 21 H 0.09 2.17 7.50 -2.39 -0.02 2.15 16 22 C -0.09 -1.08 5.83 30.45 0.18 -0.91 16 23 C -0.12 -1.36 5.92 30.65 0.18 -1.17 16 24 C -0.12 -1.20 5.69 30.26 0.17 -1.03 16 25 C -0.08 -1.18 4.63 29.85 0.14 -1.04 16 26 C -0.17 -6.25 7.68 31.12 0.24 -6.01 16 27 H 0.24 15.27 6.77 -92.71 -0.63 14.64 16 28 H 0.36 18.91 6.75 -92.71 -0.63 18.28 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.09 2.79 8.12 -2.39 -0.02 2.77 16 31 H 0.41 8.63 7.72 -92.71 -0.72 7.91 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.13 1.60 7.27 -2.39 -0.02 1.58 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.83 8.06 -2.39 -0.02 0.81 16 36 H 0.05 0.74 8.03 -2.39 -0.02 0.72 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.68 7.12 -2.39 -0.02 0.66 16 40 H 0.08 0.98 7.81 -2.38 -0.02 0.97 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -71.62 341.01 1.68 -69.95 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.19 Total: 36.75 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 3.57 Total: -19.12 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -3.70 Total: -119.84 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -71.62 1.68 -69.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020566441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.254 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds