Wall clock time and date at job start Tue Mar 31 2020 00:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48501 * 109.47173 * 269.99959 * 3 2 1 5 5 H 1.48497 * 109.47028 * 30.00176 * 3 2 1 6 6 H 1.48496 * 109.47041 * 150.00568 * 3 2 1 7 7 C 1.38815 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99993 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00078 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00232 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.84801 * 23.80358 * 10 9 7 12 12 C 1.53781 * 113.61737 * 155.00340 * 10 9 7 13 13 C 1.53781 * 87.08391 * 89.11351 * 12 10 9 14 14 H 1.09001 * 113.61731 * 270.80415 * 13 12 10 15 15 N 1.46500 * 113.61442 * 139.98112 * 13 12 10 16 16 C 1.34778 * 119.99889 * 155.00373 * 15 13 12 17 17 O 1.21275 * 119.99966 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99807 * 179.97438 * 16 15 13 19 19 C 1.52310 * 115.91287 * 111.38893 * 18 16 15 20 20 C 1.52301 * 115.91308 * 179.61413 * 18 16 15 21 21 H 1.08990 * 117.23778 * 0.63781 * 20 18 16 22 22 C 1.51267 * 121.32429 * 148.57087 * 20 18 16 23 23 C 1.52879 * 110.02050 * 338.98334 * 22 20 18 24 24 C 1.53300 * 108.57578 * 54.23670 * 23 22 20 25 25 C 1.52077 * 114.64067 * 325.14760 * 18 16 15 26 26 C 1.53786 * 87.07943 * 25.43557 * 13 12 10 27 27 H 0.97005 * 119.99734 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99619 * 0.02562 * 9 7 2 29 29 H 1.09003 * 113.61296 * 334.56401 * 12 10 9 30 30 H 1.08997 * 113.69394 * 203.67604 * 12 10 9 31 31 H 0.97005 * 119.99956 * 335.00133 * 15 13 12 32 32 H 1.09002 * 117.54011 * 213.90294 * 19 18 16 33 33 H 1.09002 * 117.53684 * 359.08148 * 19 18 16 34 34 H 1.09001 * 109.65887 * 218.66926 * 22 20 18 35 35 H 1.09002 * 109.19540 * 99.01178 * 22 20 18 36 36 H 1.08995 * 109.62092 * 294.51115 * 23 22 20 37 37 H 1.09001 * 109.61812 * 173.96385 * 23 22 20 38 38 H 1.09008 * 109.61218 * 165.82532 * 24 23 22 39 39 H 1.08994 * 109.77186 * 45.37969 * 24 23 22 40 40 H 1.09001 * 109.26078 * 314.63860 * 25 18 16 41 41 H 1.09000 * 109.26692 * 74.13746 * 25 18 16 42 42 H 1.08993 * 113.61832 * 89.11343 * 26 13 12 43 43 H 1.09004 * 113.61564 * 220.02282 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 1 3.0654 -3.5639 0.4049 12 6 1.2599 -4.8288 0.5949 13 6 0.7201 -5.0791 -0.8232 14 1 -0.1913 -4.5250 -1.0476 15 7 0.6235 -6.4986 -1.1723 16 6 -0.2558 -6.9036 -2.1101 17 8 -0.9673 -6.0929 -2.6645 18 6 -0.3547 -8.3637 -2.4696 19 6 -1.6432 -9.0644 -2.0590 20 6 -1.3848 -8.7188 -3.5337 21 1 -1.9624 -7.8996 -3.9619 22 6 -1.1694 -9.8784 -4.4808 23 6 0.3179 -10.2239 -4.5554 24 6 0.8348 -10.4670 -3.1328 25 6 0.9646 -9.1186 -2.4243 26 6 1.9989 -4.4022 -1.3444 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3880 -0.0005 29 1 0.4935 -4.5190 1.3054 30 1 1.8854 -5.6374 0.9730 31 1 1.1924 -7.1470 -0.7286 32 1 -1.5761 -10.1127 -1.7678 33 1 -2.3898 -8.4750 -1.5267 34 1 -1.5286 -9.6117 -5.4748 35 1 -1.7238 -10.7444 -4.1190 36 1 0.8640 -9.3955 -5.0066 37 1 0.4548 -11.1249 -5.1535 38 1 1.8095 -10.9532 -3.1757 39 1 0.1338 -11.1001 -2.5890 40 1 1.7352 -8.5259 -2.9174 41 1 1.2485 -9.2847 -1.3851 42 1 2.8277 -5.0934 -1.4970 43 1 1.8291 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020566442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:09 Heat of formation + Delta-G solvation = 2.525402 kcal Electronic energy + Delta-G solvation = -21724.809065 eV Core-core repulsion = 18577.707417 eV Total energy + Delta-G solvation = -3147.101648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79832 -38.97642 -37.48042 -34.06415 -33.25133 -32.70466 -31.06912 -29.63901 -25.51312 -25.08893 -24.66378 -23.65537 -22.35040 -21.61316 -20.53208 -19.02834 -18.30723 -17.38832 -17.34001 -15.96970 -15.25469 -14.86263 -14.69663 -14.63752 -14.22055 -14.05154 -13.87876 -13.57544 -13.11270 -12.77462 -12.67757 -12.32694 -12.16391 -12.03415 -11.92895 -11.61451 -11.26950 -11.14556 -10.86409 -10.78682 -10.73202 -10.24240 -10.17014 -10.14409 -9.94085 -9.81110 -9.69641 -9.40959 -8.90197 -8.64917 -6.99517 -5.78130 -3.08206 2.63114 3.30868 3.43961 3.48646 3.50639 3.62727 4.33538 4.40334 4.53360 4.57115 4.65883 4.81153 4.96838 5.00141 5.10311 5.20688 5.27472 5.27906 5.36801 5.41650 5.49091 5.52714 5.58631 5.63019 5.82648 5.84596 5.85525 5.89284 5.96745 6.02534 6.03853 6.10670 6.17840 6.25401 6.40169 6.65321 6.74877 6.81430 7.06136 7.69679 7.73824 8.40021 8.43514 9.50735 10.07273 10.41265 11.44098 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037563 B = 0.003182 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.231435 B = 8797.338591 C = 8992.425401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.164 4.164 13 C 0.125 3.875 14 H 0.112 0.888 15 N -0.713 5.713 16 C 0.541 3.459 17 O -0.538 6.538 18 C -0.144 4.144 19 C -0.153 4.153 20 C -0.117 4.117 21 H 0.114 0.886 22 C -0.089 4.089 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.083 4.083 26 C -0.183 4.183 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.396 0.604 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 -24.473 -4.549 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.086 0.914 12 C -0.204 4.204 13 C 0.021 3.979 14 H 0.130 0.870 15 N -0.362 5.362 16 C 0.327 3.673 17 O -0.415 6.415 18 C -0.147 4.147 19 C -0.191 4.191 20 C -0.136 4.136 21 H 0.132 0.868 22 C -0.127 4.127 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.120 4.120 26 C -0.226 4.226 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.230 0.770 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.714 -23.671 -4.915 24.187 hybrid contribution 0.390 0.644 0.199 0.778 sum 1.103 -23.027 -4.717 23.531 Atomic orbital electron populations 1.69669 1.05161 1.25849 1.57089 1.24787 0.95538 0.97844 1.02617 0.86159 0.78616 0.83654 0.77557 1.21636 1.21740 1.20685 1.19272 0.91102 0.83903 1.43369 0.90926 1.42201 1.05777 0.99413 1.87020 1.20909 0.95227 0.85421 0.92588 0.91384 1.23894 1.00743 0.99929 0.95849 1.22644 0.99715 0.79634 0.95919 0.86982 1.46062 1.39965 1.09747 1.40444 1.19647 0.79724 0.88670 0.79307 1.90715 1.43593 1.54672 1.52485 1.21139 0.93344 0.93382 1.06844 1.23179 0.96577 1.00806 0.98502 1.21954 1.00638 1.00633 0.90380 0.86773 1.20836 0.96615 0.96394 0.98809 1.21591 0.96046 1.01505 0.96763 1.21586 1.01394 0.96553 0.96114 1.20835 0.94220 0.95854 1.01110 1.24311 0.96256 0.99728 1.02300 0.93366 0.77976 0.90903 0.90365 0.77045 0.87944 0.88401 0.91234 0.91458 0.91493 0.91803 0.91442 0.91662 0.90905 0.91171 0.91314 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.87 9.97 -15.06 -0.15 -7.02 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -17.92 5.31 -52.64 -0.28 -18.20 16 10 C 0.17 3.40 4.56 -67.12 -0.31 3.09 16 11 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 12 C -0.16 -2.64 7.58 -25.92 -0.20 -2.84 16 13 C 0.12 2.13 4.12 -67.12 -0.28 1.85 16 14 H 0.11 2.32 7.46 -51.93 -0.39 1.93 16 15 N -0.71 -9.85 5.25 -53.02 -0.28 -10.13 16 16 C 0.54 8.24 7.26 -10.99 -0.08 8.16 16 17 O -0.54 -10.72 15.67 5.56 0.09 -10.63 16 18 C -0.14 -1.59 2.50 -156.84 -0.39 -1.99 16 19 C -0.15 -1.50 9.30 -26.74 -0.25 -1.75 16 20 C -0.12 -1.26 5.52 -91.51 -0.51 -1.77 16 21 H 0.11 1.49 7.50 -51.93 -0.39 1.10 16 22 C -0.09 -0.72 5.82 -27.67 -0.16 -0.88 16 23 C -0.12 -0.91 5.92 -26.64 -0.16 -1.06 16 24 C -0.12 -0.82 5.70 -26.64 -0.15 -0.98 16 25 C -0.08 -0.70 4.76 -27.27 -0.13 -0.83 16 26 C -0.18 -3.30 7.68 -25.91 -0.20 -3.50 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.39 10.50 7.90 -40.82 -0.32 10.18 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 31 H 0.40 4.19 7.75 -40.82 -0.32 3.87 16 32 H 0.10 0.78 7.28 -51.93 -0.38 0.40 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.06 0.42 7.13 -51.93 -0.37 0.05 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.49 7.81 -51.93 -0.41 0.09 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -32.55 342.77 -9.83 -42.38 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.18 Total: 11.61 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -3.05 Total: -9.94 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.17 Total: -56.10 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.55 -9.83 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020566442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.908 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds