Wall clock time and date at job start Tue Mar 31 2020 00:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48501 * 109.47173 * 269.99959 * 3 2 1 5 5 H 1.48497 * 109.47028 * 30.00176 * 3 2 1 6 6 H 1.48496 * 109.47041 * 150.00568 * 3 2 1 7 7 C 1.38815 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99993 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00078 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00232 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.84801 * 23.80358 * 10 9 7 12 12 C 1.53781 * 113.61737 * 155.00340 * 10 9 7 13 13 C 1.53781 * 87.08391 * 89.11351 * 12 10 9 14 14 H 1.09001 * 113.61731 * 270.80415 * 13 12 10 15 15 N 1.46500 * 113.61442 * 139.98112 * 13 12 10 16 16 C 1.34778 * 119.99889 * 155.00373 * 15 13 12 17 17 O 1.21275 * 119.99966 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99807 * 179.97438 * 16 15 13 19 19 C 1.52310 * 115.91287 * 111.38893 * 18 16 15 20 20 C 1.52301 * 115.91308 * 179.61413 * 18 16 15 21 21 H 1.08990 * 117.23778 * 0.63781 * 20 18 16 22 22 C 1.51267 * 121.32429 * 148.57087 * 20 18 16 23 23 C 1.52879 * 110.02050 * 338.98334 * 22 20 18 24 24 C 1.53300 * 108.57578 * 54.23670 * 23 22 20 25 25 C 1.52077 * 114.64067 * 325.14760 * 18 16 15 26 26 C 1.53786 * 87.07943 * 25.43557 * 13 12 10 27 27 H 0.97005 * 119.99734 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99619 * 0.02562 * 9 7 2 29 29 H 1.09003 * 113.61296 * 334.56401 * 12 10 9 30 30 H 1.08997 * 113.69394 * 203.67604 * 12 10 9 31 31 H 0.97005 * 119.99956 * 335.00133 * 15 13 12 32 32 H 1.09002 * 117.54011 * 213.90294 * 19 18 16 33 33 H 1.09002 * 117.53684 * 359.08148 * 19 18 16 34 34 H 1.09001 * 109.65887 * 218.66926 * 22 20 18 35 35 H 1.09002 * 109.19540 * 99.01178 * 22 20 18 36 36 H 1.08995 * 109.62092 * 294.51115 * 23 22 20 37 37 H 1.09001 * 109.61812 * 173.96385 * 23 22 20 38 38 H 1.09008 * 109.61218 * 165.82532 * 24 23 22 39 39 H 1.08994 * 109.77186 * 45.37969 * 24 23 22 40 40 H 1.09001 * 109.26078 * 314.63860 * 25 18 16 41 41 H 1.09000 * 109.26692 * 74.13746 * 25 18 16 42 42 H 1.08993 * 113.61832 * 89.11343 * 26 13 12 43 43 H 1.09004 * 113.61564 * 220.02282 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 1 3.0654 -3.5639 0.4049 12 6 1.2599 -4.8288 0.5949 13 6 0.7201 -5.0791 -0.8232 14 1 -0.1913 -4.5250 -1.0476 15 7 0.6235 -6.4986 -1.1723 16 6 -0.2558 -6.9036 -2.1101 17 8 -0.9673 -6.0929 -2.6645 18 6 -0.3547 -8.3637 -2.4696 19 6 -1.6432 -9.0644 -2.0590 20 6 -1.3848 -8.7188 -3.5337 21 1 -1.9624 -7.8996 -3.9619 22 6 -1.1694 -9.8784 -4.4808 23 6 0.3179 -10.2239 -4.5554 24 6 0.8348 -10.4670 -3.1328 25 6 0.9646 -9.1186 -2.4243 26 6 1.9989 -4.4022 -1.3444 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3880 -0.0005 29 1 0.4935 -4.5190 1.3054 30 1 1.8854 -5.6374 0.9730 31 1 1.1924 -7.1470 -0.7286 32 1 -1.5761 -10.1127 -1.7678 33 1 -2.3898 -8.4750 -1.5267 34 1 -1.5286 -9.6117 -5.4748 35 1 -1.7238 -10.7444 -4.1190 36 1 0.8640 -9.3955 -5.0066 37 1 0.4548 -11.1249 -5.1535 38 1 1.8095 -10.9532 -3.1757 39 1 0.1338 -11.1001 -2.5890 40 1 1.7352 -8.5259 -2.9174 41 1 1.2485 -9.2847 -1.3851 42 1 2.8277 -5.0934 -1.4970 43 1 1.8291 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020566442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:06 Heat of formation + Delta-G solvation = -18.903748 kcal Electronic energy + Delta-G solvation = -21725.738303 eV Core-core repulsion = 18577.707417 eV Total energy + Delta-G solvation = -3148.030886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.82117 -40.25747 -38.76085 -35.78453 -34.35654 -33.95050 -32.04348 -31.38439 -26.76062 -26.53903 -25.77944 -25.14216 -23.68358 -22.37980 -21.58279 -20.38969 -19.41358 -19.23280 -18.39333 -17.43617 -16.68249 -16.33335 -15.91985 -15.73918 -15.38938 -15.14994 -14.86232 -14.75725 -14.39090 -14.23508 -13.78365 -13.53284 -13.33983 -13.31995 -12.94478 -12.90078 -12.80972 -12.59515 -12.18616 -11.93584 -11.84211 -11.77956 -11.69302 -11.44225 -11.36240 -10.95696 -10.90441 -10.65068 -10.57564 -10.00340 -9.05720 -7.97557 -5.27800 1.45856 1.46776 1.48605 1.56884 2.15787 2.53910 2.74458 3.34318 3.52403 3.61861 3.65661 3.74722 3.80175 3.86050 3.91408 4.14507 4.27391 4.28330 4.33198 4.36721 4.53049 4.61518 4.72951 4.77482 4.79664 4.80628 4.96458 5.00779 5.02538 5.12279 5.14527 5.22041 5.25905 5.28091 5.28725 5.35388 5.40720 5.49186 5.53346 5.66555 6.24700 6.58266 7.27223 7.29041 8.05011 8.26470 9.26116 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037563 B = 0.003182 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.231435 B = 8797.338591 C = 8992.425401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.151 3.849 11 H 0.081 0.919 12 C -0.137 4.137 13 C 0.129 3.871 14 H 0.065 0.935 15 N -0.694 5.694 16 C 0.532 3.468 17 O -0.597 6.597 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.129 4.129 21 H 0.078 0.922 22 C -0.085 4.085 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.081 4.081 26 C -0.170 4.170 27 H 0.251 0.749 28 H 0.371 0.629 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.417 0.583 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 -27.736 -3.720 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.376 4.376 8 H 0.101 0.899 9 N -0.362 5.362 10 C 0.041 3.959 11 H 0.099 0.901 12 C -0.176 4.176 13 C 0.023 3.977 14 H 0.083 0.917 15 N -0.345 5.345 16 C 0.320 3.680 17 O -0.478 6.478 18 C -0.147 4.147 19 C -0.175 4.175 20 C -0.148 4.148 21 H 0.096 0.904 22 C -0.122 4.122 23 C -0.160 4.160 24 C -0.152 4.152 25 C -0.118 4.118 26 C -0.212 4.212 27 H 0.060 0.940 28 H 0.202 0.798 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.255 0.745 32 H 0.155 0.845 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.091 -27.014 -4.064 27.492 hybrid contribution -0.334 1.606 -0.100 1.643 sum 2.758 -25.408 -4.164 25.894 Atomic orbital electron populations 1.69848 1.06891 1.26157 1.59435 1.25671 0.96391 1.01499 1.03607 0.85075 0.77856 0.79115 0.77328 1.21690 1.22273 1.18746 1.19736 0.91737 0.84984 1.41150 0.89867 1.42416 1.05310 1.00977 1.87472 1.21248 0.95855 0.84531 0.94298 0.90104 1.23736 1.00090 0.99246 0.94534 1.22208 0.97447 0.81099 0.96919 0.91653 1.45816 1.39953 1.08684 1.40059 1.20506 0.78692 0.90332 0.78492 1.90695 1.45825 1.56738 1.54493 1.21162 0.95471 0.90711 1.07324 1.23271 0.94897 1.02066 0.97240 1.21978 1.00484 1.00775 0.91563 0.90371 1.20848 0.97729 0.95718 0.97944 1.21608 0.94987 1.01641 0.97733 1.21598 1.02702 0.95628 0.95232 1.20913 0.91884 0.96258 1.02772 1.24183 0.97901 0.99520 0.99612 0.94037 0.79776 0.92101 0.85444 0.74476 0.84542 0.90065 0.91585 0.89485 0.93212 0.89978 0.89734 0.90279 0.91726 0.88892 0.87499 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 3 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.24 -13.83 9.97 84.03 0.84 -12.99 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.72 -37.69 5.31 -320.44 -1.70 -39.39 16 10 C 0.15 5.87 4.56 45.52 0.21 6.08 16 11 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 12 C -0.14 -4.15 7.58 31.12 0.24 -3.91 16 13 C 0.13 4.40 4.12 45.52 0.19 4.59 16 14 H 0.07 2.90 7.46 -2.39 -0.02 2.89 16 15 N -0.69 -18.34 5.25 -440.04 -2.31 -20.65 16 16 C 0.53 16.39 7.26 87.66 0.64 17.03 16 17 O -0.60 -25.41 15.67 -3.01 -0.05 -25.46 16 18 C -0.14 -3.00 2.50 -53.69 -0.13 -3.13 16 19 C -0.14 -2.46 9.30 30.59 0.28 -2.18 16 20 C -0.13 -2.75 5.52 -11.37 -0.06 -2.81 16 21 H 0.08 2.22 7.50 -2.39 -0.02 2.20 16 22 C -0.09 -1.23 5.82 29.99 0.17 -1.06 16 23 C -0.12 -1.50 5.92 30.65 0.18 -1.32 16 24 C -0.11 -1.11 5.70 30.65 0.17 -0.94 16 25 C -0.08 -1.10 4.76 30.25 0.14 -0.95 16 26 C -0.17 -6.03 7.68 31.12 0.24 -5.80 16 27 H 0.25 15.46 8.31 -92.70 -0.77 14.69 16 28 H 0.37 21.20 7.90 -92.71 -0.73 20.47 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.13 2.66 8.12 -2.39 -0.02 2.64 16 31 H 0.42 7.38 7.75 -92.70 -0.72 6.67 16 32 H 0.14 1.53 7.28 -2.39 -0.02 1.51 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.93 8.06 -2.39 -0.02 0.91 16 36 H 0.05 0.78 8.04 -2.39 -0.02 0.76 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.08 0.60 7.13 -2.39 -0.02 0.58 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 0.85 7.81 -2.39 -0.02 0.83 16 42 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -76.04 342.77 1.38 -74.66 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.44 Total: 34.97 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 3.57 Total: -11.62 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -3.73 Total: -121.62 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.05 Total: -25.46 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -76.04 1.38 -74.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020566442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.757 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds