Wall clock time and date at job start Tue Mar 31 2020 00:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00052 * 2 1 4 4 H 1.48500 * 109.46957 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.47172 * 29.99860 * 3 2 1 6 6 H 1.48494 * 109.47223 * 149.99983 * 3 2 1 7 7 C 1.38812 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99970 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99691 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99963 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84951 * 23.80566 * 10 9 7 12 12 C 1.53782 * 113.61513 * 154.99906 * 10 9 7 13 13 C 1.53778 * 87.08074 * 89.11298 * 12 10 9 14 14 H 1.08998 * 113.61955 * 270.80288 * 13 12 10 15 15 N 1.46499 * 113.61069 * 139.97738 * 13 12 10 16 16 C 1.34784 * 119.99893 * 156.53341 * 15 13 12 17 17 O 1.21283 * 119.99649 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99774 * 179.72962 * 16 15 13 19 19 C 1.51842 * 108.65045 * 304.08585 * 18 16 15 20 20 C 1.53076 * 110.74917 * 172.39701 * 19 18 16 21 21 C 1.51375 * 108.59560 * 85.74706 * 20 19 18 22 22 C 1.29530 * 120.35641 * 288.08608 * 21 20 19 23 23 C 1.51368 * 120.36138 * 0.02562 * 22 21 20 24 24 C 1.51849 * 108.64764 * 179.97438 * 18 16 15 25 25 C 1.53786 * 87.17071 * 25.39194 * 13 12 10 26 26 H 0.96997 * 120.00118 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00101 * 359.97438 * 9 7 2 28 28 H 1.09001 * 113.61301 * 334.56747 * 12 10 9 29 29 H 1.08996 * 113.61585 * 203.67019 * 12 10 9 30 30 H 0.97005 * 120.00261 * 336.53553 * 15 13 12 31 31 H 1.08999 * 108.60978 * 61.97915 * 18 16 15 32 32 H 1.09000 * 109.22619 * 292.72957 * 19 18 16 33 33 H 1.09002 * 109.22451 * 52.07814 * 19 18 16 34 34 H 1.09000 * 109.61893 * 326.01944 * 20 19 18 35 35 H 1.08998 * 109.77392 * 205.56740 * 20 19 18 36 36 H 1.07998 * 119.81962 * 108.10409 * 21 20 19 37 37 H 1.08003 * 119.81300 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.61577 * 312.16043 * 23 22 21 39 39 H 1.09004 * 109.75487 * 191.72314 * 23 22 21 40 40 H 1.08998 * 109.22296 * 307.92785 * 24 18 16 41 41 H 1.09005 * 109.21998 * 67.31569 * 24 18 16 42 42 H 1.09005 * 113.61382 * 89.15760 * 25 13 12 43 43 H 1.09000 * 113.61125 * 220.05678 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5280 -3.2969 -0.4048 12 6 5.5263 -2.3658 -0.5939 13 6 6.0123 -2.0238 0.8244 14 1 5.9882 -0.9575 1.0491 15 7 7.2898 -2.6501 1.1738 16 6 8.0656 -2.1085 2.1338 17 8 7.7058 -1.1029 2.7085 18 6 9.3768 -2.7562 2.4974 19 6 9.1138 -4.2005 2.8852 20 6 10.4298 -4.9573 3.0825 21 6 10.9047 -4.7375 4.5029 22 6 11.3730 -3.5856 4.8657 23 6 11.4507 -2.4445 3.8742 24 6 10.0331 -1.9400 3.5969 25 6 4.7866 -2.7914 1.3473 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 5.6414 -1.5471 -1.3041 29 1 5.9126 -3.3125 -0.9715 30 1 7.5773 -3.4546 0.7143 31 1 10.0251 -2.7451 1.6212 32 1 8.5433 -4.2247 3.8137 33 1 8.5365 -4.6843 2.0974 34 1 11.1771 -4.5801 2.3844 35 1 10.2723 -6.0219 2.9100 36 1 10.8532 -5.5456 5.2175 37 1 11.7099 -3.4386 5.8813 38 1 11.9015 -2.7962 2.9462 39 1 12.0520 -1.6358 4.2896 40 1 10.0773 -0.8949 3.2903 41 1 9.4396 -2.0219 4.5075 42 1 4.9704 -3.8547 1.5014 43 1 4.3055 -2.3157 2.2019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021063818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:27 Heat of formation + Delta-G solvation = -0.564616 kcal Electronic energy + Delta-G solvation = -21652.072755 eV Core-core repulsion = 18504.837114 eV Total energy + Delta-G solvation = -3147.235642 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43149 -38.80237 -37.58956 -34.20674 -33.18165 -32.38990 -31.95370 -30.27705 -26.43589 -25.23185 -24.47993 -24.07012 -22.59570 -21.48958 -20.00150 -18.97779 -18.31370 -17.68293 -17.21039 -16.56754 -16.04299 -15.16616 -14.86637 -14.64125 -14.33906 -13.98269 -13.72248 -13.31462 -13.28061 -12.96749 -12.71473 -12.41004 -12.21651 -12.11363 -12.07397 -11.91734 -11.55318 -11.02174 -10.96793 -10.90487 -10.82186 -10.60491 -10.39985 -10.25775 -9.91579 -9.67371 -9.57656 -9.25421 -8.95181 -8.75503 -7.31322 -5.79686 -3.16363 2.01452 2.69540 3.27076 3.38655 3.43412 3.46533 4.30200 4.48417 4.52682 4.58018 4.74531 4.82332 4.88049 4.90861 5.07978 5.10606 5.17775 5.20897 5.25005 5.36039 5.41133 5.45246 5.53761 5.66292 5.70094 5.76475 5.80842 5.89200 5.96186 5.99363 6.09321 6.14396 6.26201 6.38357 6.51018 6.57999 6.62534 6.68947 6.90040 7.61191 7.96865 8.32790 8.39652 9.16929 9.89448 10.07809 11.38204 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033715 B = 0.003366 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.295992 B = 8316.326201 C = 8734.483726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.177 3.823 11 H 0.077 0.923 12 C -0.165 4.165 13 C 0.122 3.878 14 H 0.108 0.892 15 N -0.718 5.718 16 C 0.509 3.491 17 O -0.539 6.539 18 C -0.103 4.103 19 C -0.106 4.106 20 C -0.090 4.090 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.092 4.092 24 C -0.096 4.096 25 C -0.182 4.182 26 H 0.260 0.740 27 H 0.363 0.637 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.396 0.604 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.250 -10.939 4.710 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.095 0.905 12 C -0.205 4.205 13 C 0.018 3.982 14 H 0.126 0.874 15 N -0.368 5.368 16 C 0.295 3.705 17 O -0.416 6.416 18 C -0.124 4.124 19 C -0.144 4.144 20 C -0.127 4.127 21 C -0.180 4.180 22 C -0.173 4.173 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.224 4.224 26 H 0.071 0.929 27 H 0.196 0.804 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.230 0.770 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.681 -10.227 5.105 27.199 hybrid contribution 0.704 0.794 -0.049 1.062 sum 25.386 -9.433 5.056 27.549 Atomic orbital electron populations 1.69697 1.05105 1.25966 1.57073 1.24671 0.95252 0.97257 1.01678 0.86590 0.79450 0.84965 0.77855 1.20956 1.21552 1.20125 1.19092 0.80302 0.94874 1.43567 0.88956 1.42549 1.04079 1.01575 1.88784 1.20897 0.89725 0.90207 0.92741 0.90497 1.23902 0.99121 1.01735 0.95740 1.22635 0.80978 0.98691 0.95944 0.87407 1.46152 1.21462 1.30083 1.39135 1.20767 0.85823 0.84441 0.79470 1.90717 1.73523 1.25307 1.52006 1.21027 0.94755 0.95994 1.00620 1.21299 0.97617 0.92833 1.02666 1.20813 0.96713 1.00419 0.94740 1.22542 1.00161 0.97759 0.97499 1.22585 1.00217 0.95002 0.99501 1.20841 0.96971 0.96752 0.98387 1.21094 0.94681 0.99263 0.98347 1.24297 0.96837 0.99226 1.02035 0.92950 0.80386 0.90999 0.89886 0.76967 0.89043 0.91029 0.91175 0.90892 0.91102 0.87559 0.87577 0.91057 0.91212 0.90674 0.91105 0.90878 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.48 27.74 -169.99 -4.71 17.77 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 7 C -0.25 -7.02 10.45 -15.06 -0.16 -7.18 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 N -0.73 -17.29 5.11 -52.55 -0.27 -17.56 16 10 C 0.18 3.30 4.57 -67.03 -0.31 2.99 16 11 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 12 C -0.17 -2.41 7.58 -25.92 -0.20 -2.61 16 13 C 0.12 1.90 4.09 -67.12 -0.27 1.62 16 14 H 0.11 2.03 7.50 -51.93 -0.39 1.64 16 15 N -0.72 -8.77 5.16 -53.02 -0.27 -9.04 16 16 C 0.51 6.90 7.14 -10.98 -0.08 6.82 16 17 O -0.54 -9.90 15.38 5.56 0.09 -9.81 16 18 C -0.10 -0.97 2.05 -92.95 -0.19 -1.16 16 19 C -0.11 -0.84 4.87 -27.28 -0.13 -0.97 16 20 C -0.09 -0.58 5.62 -27.51 -0.15 -0.74 16 21 C -0.16 -1.18 9.34 -35.29 -0.33 -1.51 16 22 C -0.16 -1.18 9.34 -35.29 -0.33 -1.51 16 23 C -0.09 -0.70 5.61 -27.55 -0.15 -0.86 16 24 C -0.10 -0.96 4.30 -27.31 -0.12 -1.08 16 25 C -0.18 -3.07 7.69 -25.83 -0.20 -3.27 16 26 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 27 H 0.36 8.58 5.76 -40.82 -0.24 8.35 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 30 H 0.40 3.50 7.73 -40.82 -0.32 3.18 16 31 H 0.09 0.70 7.89 -51.93 -0.41 0.29 16 32 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 33 H 0.07 0.47 7.00 -51.93 -0.36 0.11 16 34 H 0.07 0.44 6.68 -51.93 -0.35 0.09 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.11 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.07 0.48 6.68 -51.93 -0.35 0.14 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 41 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -33.39 338.37 -9.03 -42.42 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.02 Total: 9.02 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.72 Total: -9.31 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.23 Total: -55.18 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.39 -9.03 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021063818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.857 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds