Wall clock time and date at job start Tue Mar 31 2020 00:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00052 * 2 1 4 4 H 1.48500 * 109.46957 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.47172 * 29.99860 * 3 2 1 6 6 H 1.48494 * 109.47223 * 149.99983 * 3 2 1 7 7 C 1.38812 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99970 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99691 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99963 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84951 * 23.80566 * 10 9 7 12 12 C 1.53782 * 113.61513 * 154.99906 * 10 9 7 13 13 C 1.53778 * 87.08074 * 89.11298 * 12 10 9 14 14 H 1.08998 * 113.61955 * 270.80288 * 13 12 10 15 15 N 1.46499 * 113.61069 * 139.97738 * 13 12 10 16 16 C 1.34784 * 119.99893 * 156.53341 * 15 13 12 17 17 O 1.21283 * 119.99649 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99774 * 179.72962 * 16 15 13 19 19 C 1.51842 * 108.65045 * 304.08585 * 18 16 15 20 20 C 1.53076 * 110.74917 * 172.39701 * 19 18 16 21 21 C 1.51375 * 108.59560 * 85.74706 * 20 19 18 22 22 C 1.29530 * 120.35641 * 288.08608 * 21 20 19 23 23 C 1.51368 * 120.36138 * 0.02562 * 22 21 20 24 24 C 1.51849 * 108.64764 * 179.97438 * 18 16 15 25 25 C 1.53786 * 87.17071 * 25.39194 * 13 12 10 26 26 H 0.96997 * 120.00118 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00101 * 359.97438 * 9 7 2 28 28 H 1.09001 * 113.61301 * 334.56747 * 12 10 9 29 29 H 1.08996 * 113.61585 * 203.67019 * 12 10 9 30 30 H 0.97005 * 120.00261 * 336.53553 * 15 13 12 31 31 H 1.08999 * 108.60978 * 61.97915 * 18 16 15 32 32 H 1.09000 * 109.22619 * 292.72957 * 19 18 16 33 33 H 1.09002 * 109.22451 * 52.07814 * 19 18 16 34 34 H 1.09000 * 109.61893 * 326.01944 * 20 19 18 35 35 H 1.08998 * 109.77392 * 205.56740 * 20 19 18 36 36 H 1.07998 * 119.81962 * 108.10409 * 21 20 19 37 37 H 1.08003 * 119.81300 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.61577 * 312.16043 * 23 22 21 39 39 H 1.09004 * 109.75487 * 191.72314 * 23 22 21 40 40 H 1.08998 * 109.22296 * 307.92785 * 24 18 16 41 41 H 1.09005 * 109.21998 * 67.31569 * 24 18 16 42 42 H 1.09005 * 113.61382 * 89.15760 * 25 13 12 43 43 H 1.09000 * 113.61125 * 220.05678 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5280 -3.2969 -0.4048 12 6 5.5263 -2.3658 -0.5939 13 6 6.0123 -2.0238 0.8244 14 1 5.9882 -0.9575 1.0491 15 7 7.2898 -2.6501 1.1738 16 6 8.0656 -2.1085 2.1338 17 8 7.7058 -1.1029 2.7085 18 6 9.3768 -2.7562 2.4974 19 6 9.1138 -4.2005 2.8852 20 6 10.4298 -4.9573 3.0825 21 6 10.9047 -4.7375 4.5029 22 6 11.3730 -3.5856 4.8657 23 6 11.4507 -2.4445 3.8742 24 6 10.0331 -1.9400 3.5969 25 6 4.7866 -2.7914 1.3473 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 5.6414 -1.5471 -1.3041 29 1 5.9126 -3.3125 -0.9715 30 1 7.5773 -3.4546 0.7143 31 1 10.0251 -2.7451 1.6212 32 1 8.5433 -4.2247 3.8137 33 1 8.5365 -4.6843 2.0974 34 1 11.1771 -4.5801 2.3844 35 1 10.2723 -6.0219 2.9100 36 1 10.8532 -5.5456 5.2175 37 1 11.7099 -3.4386 5.8813 38 1 11.9015 -2.7962 2.9462 39 1 12.0520 -1.6358 4.2896 40 1 10.0773 -0.8949 3.2903 41 1 9.4396 -2.0219 4.5075 42 1 4.9704 -3.8547 1.5014 43 1 4.3055 -2.3157 2.2019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021063818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:27 Heat of formation + Delta-G solvation = -22.951067 kcal Electronic energy + Delta-G solvation = -21653.043505 eV Core-core repulsion = 18504.837114 eV Total energy + Delta-G solvation = -3148.206391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47678 -39.95371 -38.57529 -35.83915 -34.50338 -33.44991 -32.70783 -32.13039 -27.29734 -26.54813 -25.94484 -24.87279 -24.17702 -22.46424 -20.96302 -20.47775 -19.62148 -18.87192 -18.18883 -17.61004 -17.03676 -16.55304 -16.15263 -16.05634 -15.47444 -15.08447 -14.79650 -14.70813 -14.43964 -13.98966 -13.91110 -13.73171 -13.61233 -13.30141 -13.13539 -12.91004 -12.66846 -12.48217 -12.24306 -12.13833 -11.87208 -11.79440 -11.73820 -11.50557 -11.36126 -11.20877 -10.96771 -10.69928 -9.99507 -9.85566 -9.33686 -8.06626 -5.39789 1.34261 1.36962 1.43170 1.45767 1.64504 2.24466 2.43777 3.23366 3.47177 3.61597 3.64866 3.73631 3.84152 3.86593 4.13310 4.21325 4.22283 4.24515 4.29959 4.47498 4.53435 4.63285 4.71205 4.78100 4.82546 4.91615 4.94241 4.99111 5.08399 5.10622 5.18501 5.21337 5.25077 5.28374 5.33311 5.43031 5.63409 5.76873 5.84225 6.08694 6.19242 6.62806 7.03545 7.32679 7.80863 7.96869 9.14712 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033715 B = 0.003366 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.295992 B = 8316.326201 C = 8734.483726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.231 4.231 8 H 0.065 0.935 9 N -0.738 5.738 10 C 0.151 3.849 11 H 0.078 0.922 12 C -0.136 4.136 13 C 0.127 3.873 14 H 0.072 0.928 15 N -0.700 5.700 16 C 0.504 3.496 17 O -0.595 6.595 18 C -0.092 4.092 19 C -0.103 4.103 20 C -0.086 4.086 21 C -0.164 4.164 22 C -0.169 4.169 23 C -0.085 4.085 24 C -0.095 4.095 25 C -0.173 4.173 26 H 0.258 0.742 27 H 0.363 0.637 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.418 0.582 31 H 0.122 0.878 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.106 0.894 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.547 -12.692 3.588 31.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.362 4.362 8 H 0.083 0.917 9 N -0.379 5.379 10 C 0.041 3.959 11 H 0.096 0.904 12 C -0.175 4.175 13 C 0.021 3.979 14 H 0.090 0.910 15 N -0.352 5.352 16 C 0.292 3.708 17 O -0.475 6.475 18 C -0.113 4.113 19 C -0.140 4.140 20 C -0.123 4.123 21 C -0.182 4.182 22 C -0.187 4.187 23 C -0.122 4.122 24 C -0.133 4.133 25 C -0.215 4.215 26 H 0.067 0.933 27 H 0.196 0.804 28 H 0.089 0.911 29 H 0.147 0.853 30 H 0.257 0.743 31 H 0.140 0.860 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.124 0.876 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 28.056 -12.058 3.961 30.793 hybrid contribution -0.323 1.208 0.357 1.300 sum 27.733 -10.851 4.317 30.092 Atomic orbital electron populations 1.69860 1.06904 1.26656 1.59687 1.25431 0.96070 1.00943 1.02792 0.85509 0.78278 0.80310 0.78284 1.19758 1.22176 1.18971 1.19101 0.82398 0.93675 1.41022 0.91738 1.42573 1.02580 1.03637 1.89150 1.21258 0.91662 0.88158 0.94779 0.90430 1.23740 0.94993 1.04015 0.94725 1.22235 0.82126 0.96837 0.96673 0.91023 1.45914 1.19965 1.30486 1.38829 1.21581 0.86943 0.83692 0.78616 1.90702 1.74954 1.27943 1.53908 1.21059 0.92474 0.96337 1.01408 1.21301 0.98617 0.91793 1.02336 1.20831 0.95967 1.01221 0.94288 1.22765 0.99376 0.97747 0.98342 1.22677 1.01050 0.95248 0.99759 1.20786 0.95250 0.96957 0.99248 1.21050 0.96058 0.98659 0.97501 1.24200 0.96889 1.01047 0.99319 0.93264 0.80375 0.91121 0.85252 0.74335 0.86049 0.93045 0.89219 0.89589 0.89475 0.86993 0.87428 0.89420 0.90821 0.92512 0.93595 0.87575 0.94680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.70 13.97 21.65 0.30 -63.40 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.95 47.31 27.74 68.60 1.90 49.22 16 4 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.26 -12.53 6.52 99.48 0.65 -11.88 16 7 C -0.23 -13.30 10.45 84.03 0.88 -12.42 16 8 H 0.06 4.00 8.06 -2.91 -0.02 3.97 16 9 N -0.74 -34.91 5.11 -320.16 -1.64 -36.55 16 10 C 0.15 5.44 4.57 45.57 0.21 5.65 16 11 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 12 C -0.14 -3.49 7.58 31.12 0.24 -3.25 16 13 C 0.13 3.72 4.09 45.52 0.19 3.91 16 14 H 0.07 2.70 7.50 -2.39 -0.02 2.68 16 15 N -0.70 -15.02 5.16 -440.03 -2.27 -17.29 16 16 C 0.50 12.89 7.14 87.65 0.63 13.52 16 17 O -0.59 -22.15 15.38 -3.04 -0.05 -22.20 16 18 C -0.09 -1.50 2.05 -12.30 -0.03 -1.53 16 19 C -0.10 -1.29 4.87 30.24 0.15 -1.14 16 20 C -0.09 -0.79 5.62 30.09 0.17 -0.62 16 21 C -0.16 -1.99 9.34 27.37 0.26 -1.73 16 22 C -0.17 -2.29 9.34 27.36 0.26 -2.03 16 23 C -0.09 -1.14 5.61 30.06 0.17 -0.97 16 24 C -0.09 -1.82 4.30 30.22 0.13 -1.69 16 25 C -0.17 -5.60 7.69 31.18 0.24 -5.36 16 26 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 27 H 0.36 17.00 5.76 -92.71 -0.53 16.47 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.13 2.19 8.11 -2.39 -0.02 2.17 16 30 H 0.42 5.31 7.73 -92.70 -0.72 4.59 16 31 H 0.12 1.32 7.89 -2.39 -0.02 1.30 16 32 H 0.05 0.87 7.86 -2.39 -0.02 0.86 16 33 H 0.09 0.78 7.00 -2.39 -0.02 0.77 16 34 H 0.09 0.61 6.68 -2.39 -0.02 0.59 16 35 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.11 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.09 0.89 6.68 -2.39 -0.02 0.87 16 39 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.06 1.28 7.78 -2.39 -0.02 1.26 16 41 H 0.05 1.09 7.85 -2.38 -0.02 1.07 16 42 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 43 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.75 338.37 1.89 -74.86 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.31 Total: 26.21 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 3.94 Total: -10.86 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -3.60 Total: -117.24 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.22 kcal Total: -76.75 1.89 -74.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021063818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.912 kcal (2) G-P(sol) polarization free energy of solvation -76.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds