Wall clock time and date at job start Tue Mar 31 2020 00:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00208 * 2 1 4 4 H 1.48501 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46904 * 299.99893 * 3 2 1 6 6 H 1.48499 * 109.47084 * 59.99757 * 3 2 1 7 7 C 1.38818 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00066 * 163.13334 * 7 2 1 9 9 N 1.36935 * 119.99956 * 343.12331 * 7 2 1 10 10 C 1.47074 * 120.84254 * 151.99866 * 9 7 2 11 11 C 1.53099 * 108.64990 * 125.67767 * 10 9 7 12 12 C 1.53164 * 109.57767 * 55.35638 * 11 10 9 13 13 H 1.08997 * 110.65458 * 60.96167 * 12 11 10 14 14 C 1.53145 * 109.58547 * 299.41455 * 12 11 10 15 15 H 1.09002 * 109.24957 * 179.59765 * 14 12 11 16 16 C 1.52852 * 108.71623 * 298.74301 * 14 12 11 17 17 C 1.53115 * 109.34192 * 297.55840 * 16 14 12 18 18 C 1.53144 * 109.48071 * 60.65200 * 17 16 14 19 19 N 1.46942 * 109.02615 * 305.93288 * 18 17 16 20 20 C 1.34777 * 120.84430 * 234.01298 * 19 18 17 21 21 O 1.21285 * 120.00317 * 179.97438 * 20 19 18 22 22 C 1.50699 * 119.99904 * 359.97438 * 20 19 18 23 23 C 1.52995 * 117.50378 * 248.62489 * 22 20 19 24 24 C 1.52995 * 60.00212 * 252.51104 * 23 22 20 25 25 C 1.46898 * 120.77220 * 331.95129 * 9 7 2 26 26 H 0.96999 * 119.99853 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.59325 * 5.93244 * 10 9 7 28 28 H 1.08999 * 109.60420 * 245.42967 * 10 9 7 29 29 H 1.08997 * 109.45382 * 295.32028 * 11 10 9 30 30 H 1.09007 * 109.43848 * 175.37290 * 11 10 9 31 31 H 1.09006 * 109.49176 * 57.52031 * 16 14 12 32 32 H 1.08998 * 109.49112 * 177.59839 * 16 14 12 33 33 H 1.09007 * 109.47169 * 180.64976 * 17 16 14 34 34 H 1.08999 * 109.47374 * 300.65078 * 17 16 14 35 35 H 1.09003 * 109.54061 * 65.78946 * 18 17 16 36 36 H 1.08997 * 109.54929 * 186.06508 * 18 17 16 37 37 H 1.09003 * 115.54751 * 34.33296 * 22 20 19 38 38 H 1.09003 * 117.49799 * 359.97438 * 23 22 20 39 39 H 1.08998 * 117.50216 * 145.01797 * 23 22 20 40 40 H 1.09011 * 117.49653 * 252.51339 * 24 23 22 41 41 H 1.08994 * 117.50384 * 107.48768 * 24 23 22 42 42 H 1.08999 * 109.51511 * 113.40356 * 25 9 7 43 43 H 1.09003 * 109.51504 * 353.29558 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0554 -1.2222 -0.2719 9 7 1.3698 -2.3627 0.3432 10 6 1.8128 -3.6569 -0.1969 11 6 2.0776 -4.6103 0.9714 12 6 0.8254 -4.7080 1.8480 13 1 -0.0149 -5.1007 1.2756 14 6 0.4801 -3.3242 2.4059 15 1 -0.4155 -3.3987 3.0228 16 6 1.6457 -2.8375 3.2665 17 6 1.8332 -3.7889 4.4514 18 6 2.1496 -5.1946 3.9325 19 7 1.1035 -5.6019 2.9843 20 6 0.4335 -6.7596 3.1499 21 8 -0.4274 -7.0806 2.3581 22 6 0.7539 -7.6551 4.3188 23 6 1.4251 -8.9966 4.0179 24 6 -0.0415 -8.9553 4.4515 25 6 0.2236 -2.3449 1.2618 26 1 -0.4850 0.8401 0.0004 27 1 2.7288 -3.5190 -0.7714 28 1 1.0348 -4.0713 -0.8381 29 1 2.9090 -4.2328 1.5667 30 1 2.3275 -5.5981 0.5841 31 1 2.5565 -2.8181 2.6679 32 1 1.4313 -1.8346 3.6357 33 1 2.6568 -3.4373 5.0730 34 1 0.9181 -3.8175 5.0428 35 1 3.1161 -5.1883 3.4286 36 1 2.1769 -5.8942 4.7679 37 1 1.0398 -7.1439 5.2381 38 1 1.6346 -9.2317 2.9743 39 1 2.1530 -9.3682 4.7391 40 1 -0.2786 -9.2997 5.4582 41 1 -0.7966 -9.1630 3.6934 42 1 -0.6780 -2.6399 0.7249 43 1 0.0952 -1.3401 1.6644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021488514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:42 Heat of formation + Delta-G solvation = 10.361456 kcal Electronic energy + Delta-G solvation = -23154.976876 eV Core-core repulsion = 20008.215024 eV Total energy + Delta-G solvation = -3146.761852 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43383 -38.47785 -36.03273 -35.51053 -32.55375 -32.49777 -30.27473 -29.45854 -25.75270 -25.48518 -23.72938 -22.58626 -22.19355 -21.88495 -21.16287 -18.81475 -17.84056 -17.41251 -16.71761 -15.80762 -15.25371 -15.05921 -14.48254 -14.29558 -14.22729 -13.62296 -13.47341 -13.15257 -12.93103 -12.51319 -12.36636 -12.29545 -12.15971 -11.70742 -11.53445 -11.15324 -10.96942 -10.75291 -10.70478 -10.63362 -10.53768 -10.44439 -10.07926 -10.05001 -9.95419 -9.68878 -9.55833 -9.33896 -8.49804 -8.21817 -6.66801 -5.78975 -3.21246 2.62732 3.14247 3.36330 3.44536 3.46194 3.77974 4.48887 4.49092 4.63867 4.76565 4.89118 5.08022 5.18964 5.21652 5.38772 5.41949 5.46905 5.50342 5.56170 5.61029 5.72067 5.79721 5.81980 5.90563 5.99360 6.08691 6.12641 6.23649 6.34037 6.43536 6.49488 6.58058 6.69795 6.78713 6.93138 6.97287 7.05542 7.32998 7.61962 7.71739 7.79848 8.39119 8.44367 9.20753 9.83961 10.42033 11.29698 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035495 B = 0.004694 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.653869 B = 5963.211144 C = 6172.159953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.147 3.853 11 C -0.139 4.139 12 C 0.153 3.847 13 H 0.091 0.909 14 C -0.115 4.115 15 H 0.056 0.944 16 C -0.104 4.104 17 C -0.136 4.136 18 C 0.107 3.893 19 N -0.601 5.601 20 C 0.541 3.459 21 O -0.548 6.548 22 C -0.193 4.193 23 C -0.153 4.153 24 C -0.150 4.150 25 C 0.178 3.822 26 H 0.253 0.747 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.019 0.981 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -13.158 11.218 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.179 4.179 12 C 0.051 3.949 13 H 0.110 0.890 14 C -0.136 4.136 15 H 0.075 0.925 16 C -0.142 4.142 17 C -0.174 4.174 18 C -0.016 4.016 19 N -0.332 5.332 20 C 0.329 3.671 21 O -0.426 6.426 22 C -0.214 4.214 23 C -0.191 4.191 24 C -0.188 4.188 25 C 0.052 3.948 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.037 0.963 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.971 -13.166 10.773 17.469 hybrid contribution 0.449 1.003 0.175 1.113 sum 4.420 -12.163 10.947 16.950 Atomic orbital electron populations 1.70037 1.05249 1.25367 1.53962 1.25032 0.95225 0.98324 1.00925 0.86269 0.79376 0.84141 0.77270 1.20276 1.21774 1.21608 1.19185 0.92477 0.84634 1.41602 0.91661 1.44054 1.35633 1.01437 1.49980 1.20880 0.97877 0.86767 0.92497 1.22380 0.97398 0.99337 0.98792 1.21355 0.98480 0.89096 0.85928 0.89046 1.22039 0.97346 0.95072 0.99120 0.92543 1.21454 1.00046 0.97640 0.95051 1.21985 1.01500 0.95030 0.98889 1.21723 0.91089 0.96495 0.92303 1.48416 1.37304 1.20415 1.27085 1.19574 0.81015 0.81022 0.85457 1.90673 1.32765 1.73323 1.45879 1.22250 1.08915 0.90572 0.99657 1.22900 0.96250 0.96841 1.03073 1.22932 0.94961 0.97584 1.03285 1.20692 0.88752 0.97852 0.87554 0.93683 0.92473 0.96224 0.91583 0.93200 0.90488 0.92106 0.91343 0.92203 0.91377 0.90431 0.85967 0.88333 0.87993 0.88149 0.87480 0.96266 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 11.20 55.49 0.62 -25.24 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.64 9.61 -15.06 -0.14 -6.78 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.31 2.61 -172.54 -0.45 -14.76 16 10 C 0.15 3.07 6.52 -3.68 -0.02 3.05 16 11 C -0.14 -2.47 5.00 -26.60 -0.13 -2.60 16 12 C 0.15 2.78 2.65 -67.37 -0.18 2.60 16 13 H 0.09 1.90 7.06 -51.93 -0.37 1.53 16 14 C -0.11 -2.19 2.50 -90.74 -0.23 -2.42 16 15 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 16 C -0.10 -1.77 4.85 -26.75 -0.13 -1.90 16 17 C -0.14 -1.76 6.08 -26.60 -0.16 -1.92 16 18 C 0.11 1.31 5.85 -3.73 -0.02 1.29 16 19 N -0.60 -9.25 2.68 -164.94 -0.44 -9.69 16 20 C 0.54 8.55 7.50 -10.99 -0.08 8.47 16 21 O -0.55 -10.78 15.75 5.55 0.09 -10.69 16 22 C -0.19 -2.18 5.13 -91.77 -0.47 -2.65 16 23 C -0.15 -1.43 10.23 -26.74 -0.27 -1.71 16 24 C -0.15 -1.52 10.04 -26.73 -0.27 -1.78 16 25 C 0.18 4.19 4.70 -3.94 -0.02 4.17 16 26 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.15 5.25 -51.93 -0.27 0.87 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.42 6.03 -51.93 -0.31 1.11 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.82 7.22 -51.93 -0.37 0.44 16 36 H 0.08 0.74 5.53 -51.93 -0.29 0.45 16 37 H 0.12 1.13 6.59 -51.93 -0.34 0.79 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.11 1.27 7.67 -51.93 -0.40 0.87 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -30.47 325.69 -9.38 -39.85 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.86 Total: 1.51 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.22 Total: -2.17 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.27 Total: -49.69 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.47 -9.38 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021488514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.214 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds