Wall clock time and date at job start Tue Mar 31 2020 00:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00208 * 2 1 4 4 H 1.48501 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46904 * 299.99893 * 3 2 1 6 6 H 1.48499 * 109.47084 * 59.99757 * 3 2 1 7 7 C 1.38818 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00066 * 163.13334 * 7 2 1 9 9 N 1.36935 * 119.99956 * 343.12331 * 7 2 1 10 10 C 1.47074 * 120.84254 * 151.99866 * 9 7 2 11 11 C 1.53099 * 108.64990 * 125.67767 * 10 9 7 12 12 C 1.53164 * 109.57767 * 55.35638 * 11 10 9 13 13 H 1.08997 * 110.65458 * 60.96167 * 12 11 10 14 14 C 1.53145 * 109.58547 * 299.41455 * 12 11 10 15 15 H 1.09002 * 109.24957 * 179.59765 * 14 12 11 16 16 C 1.52852 * 108.71623 * 298.74301 * 14 12 11 17 17 C 1.53115 * 109.34192 * 297.55840 * 16 14 12 18 18 C 1.53144 * 109.48071 * 60.65200 * 17 16 14 19 19 N 1.46942 * 109.02615 * 305.93288 * 18 17 16 20 20 C 1.34777 * 120.84430 * 234.01298 * 19 18 17 21 21 O 1.21285 * 120.00317 * 179.97438 * 20 19 18 22 22 C 1.50699 * 119.99904 * 359.97438 * 20 19 18 23 23 C 1.52995 * 117.50378 * 248.62489 * 22 20 19 24 24 C 1.52995 * 60.00212 * 252.51104 * 23 22 20 25 25 C 1.46898 * 120.77220 * 331.95129 * 9 7 2 26 26 H 0.96999 * 119.99853 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.59325 * 5.93244 * 10 9 7 28 28 H 1.08999 * 109.60420 * 245.42967 * 10 9 7 29 29 H 1.08997 * 109.45382 * 295.32028 * 11 10 9 30 30 H 1.09007 * 109.43848 * 175.37290 * 11 10 9 31 31 H 1.09006 * 109.49176 * 57.52031 * 16 14 12 32 32 H 1.08998 * 109.49112 * 177.59839 * 16 14 12 33 33 H 1.09007 * 109.47169 * 180.64976 * 17 16 14 34 34 H 1.08999 * 109.47374 * 300.65078 * 17 16 14 35 35 H 1.09003 * 109.54061 * 65.78946 * 18 17 16 36 36 H 1.08997 * 109.54929 * 186.06508 * 18 17 16 37 37 H 1.09003 * 115.54751 * 34.33296 * 22 20 19 38 38 H 1.09003 * 117.49799 * 359.97438 * 23 22 20 39 39 H 1.08998 * 117.50216 * 145.01797 * 23 22 20 40 40 H 1.09011 * 117.49653 * 252.51339 * 24 23 22 41 41 H 1.08994 * 117.50384 * 107.48768 * 24 23 22 42 42 H 1.08999 * 109.51511 * 113.40356 * 25 9 7 43 43 H 1.09003 * 109.51504 * 353.29558 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0554 -1.2222 -0.2719 9 7 1.3698 -2.3627 0.3432 10 6 1.8128 -3.6569 -0.1969 11 6 2.0776 -4.6103 0.9714 12 6 0.8254 -4.7080 1.8480 13 1 -0.0149 -5.1007 1.2756 14 6 0.4801 -3.3242 2.4059 15 1 -0.4155 -3.3987 3.0228 16 6 1.6457 -2.8375 3.2665 17 6 1.8332 -3.7889 4.4514 18 6 2.1496 -5.1946 3.9325 19 7 1.1035 -5.6019 2.9843 20 6 0.4335 -6.7596 3.1499 21 8 -0.4274 -7.0806 2.3581 22 6 0.7539 -7.6551 4.3188 23 6 1.4251 -8.9966 4.0179 24 6 -0.0415 -8.9553 4.4515 25 6 0.2236 -2.3449 1.2618 26 1 -0.4850 0.8401 0.0004 27 1 2.7288 -3.5190 -0.7714 28 1 1.0348 -4.0713 -0.8381 29 1 2.9090 -4.2328 1.5667 30 1 2.3275 -5.5981 0.5841 31 1 2.5565 -2.8181 2.6679 32 1 1.4313 -1.8346 3.6357 33 1 2.6568 -3.4373 5.0730 34 1 0.9181 -3.8175 5.0428 35 1 3.1161 -5.1883 3.4286 36 1 2.1769 -5.8942 4.7679 37 1 1.0398 -7.1439 5.2381 38 1 1.6346 -9.2317 2.9743 39 1 2.1530 -9.3682 4.7391 40 1 -0.2786 -9.2997 5.4582 41 1 -0.7966 -9.1630 3.6934 42 1 -0.6780 -2.6399 0.7249 43 1 0.0952 -1.3401 1.6644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021488514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:41 Heat of formation + Delta-G solvation = -7.073413 kcal Electronic energy + Delta-G solvation = -23155.732908 eV Core-core repulsion = 20008.215024 eV Total energy + Delta-G solvation = -3147.517884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72399 -39.82856 -37.19959 -36.91244 -34.32403 -33.92136 -31.90260 -31.14806 -27.49872 -26.76835 -25.18373 -23.56443 -23.48911 -23.24108 -22.71264 -20.09861 -19.38531 -18.56485 -18.39546 -17.10338 -16.91447 -16.41123 -15.96158 -15.63362 -15.45444 -15.09192 -15.02575 -14.77133 -14.28551 -14.09788 -13.78477 -13.58175 -13.38269 -13.19844 -12.93532 -12.61470 -12.52528 -12.40476 -12.20955 -12.00078 -11.84512 -11.78724 -11.53840 -11.44644 -11.37754 -11.28183 -11.08222 -10.70555 -10.54062 -9.55199 -8.69768 -7.86805 -5.32718 1.46989 1.49054 1.49959 1.59509 1.96112 2.51662 2.94592 3.29369 3.48882 3.62606 3.78324 3.86657 3.94501 4.00003 4.01985 4.09676 4.20788 4.23996 4.37151 4.49946 4.59245 4.65828 4.71339 4.76687 4.85042 4.92443 4.94705 4.97270 5.03183 5.07040 5.11384 5.14533 5.22161 5.26110 5.29849 5.43684 5.59073 5.61073 5.67262 5.69806 6.38221 6.51508 7.13637 7.18695 7.83252 8.38294 9.20548 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035495 B = 0.004694 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.653869 B = 5963.211144 C = 6172.159953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.601 5.601 10 C 0.142 3.858 11 C -0.121 4.121 12 C 0.160 3.840 13 H 0.056 0.944 14 C -0.105 4.105 15 H 0.051 0.949 16 C -0.098 4.098 17 C -0.126 4.126 18 C 0.103 3.897 19 N -0.600 5.600 20 C 0.531 3.469 21 O -0.600 6.600 22 C -0.199 4.199 23 C -0.135 4.135 24 C -0.154 4.154 25 C 0.189 3.811 26 H 0.249 0.751 27 H 0.065 0.935 28 H 0.004 0.996 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.155 0.845 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.078 0.922 42 H -0.020 1.020 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.390 -14.627 14.036 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.089 0.911 9 N -0.324 5.324 10 C 0.016 3.984 11 C -0.161 4.161 12 C 0.056 3.944 13 H 0.074 0.926 14 C -0.125 4.125 15 H 0.069 0.931 16 C -0.136 4.136 17 C -0.164 4.164 18 C -0.018 4.018 19 N -0.330 5.330 20 C 0.322 3.678 21 O -0.482 6.482 22 C -0.220 4.220 23 C -0.172 4.172 24 C -0.191 4.191 25 C 0.062 3.938 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.022 0.978 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.097 0.903 42 H -0.001 1.001 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.874 -14.660 13.616 21.156 hybrid contribution -0.500 1.419 -0.787 1.698 sum 6.374 -13.242 12.829 19.508 Atomic orbital electron populations 1.70211 1.06888 1.25714 1.55696 1.25799 0.95886 1.01516 1.01269 0.85226 0.78846 0.79898 0.76603 1.18647 1.22365 1.21719 1.19533 0.92832 0.85506 1.40580 0.91058 1.44246 1.35444 1.02183 1.50494 1.21012 0.97514 0.86021 0.93836 1.22160 0.97392 0.99096 0.97423 1.20948 0.97539 0.88853 0.87047 0.92611 1.21803 0.98511 0.94669 0.97560 0.93065 1.21363 0.97885 0.98169 0.96184 1.21938 1.03051 0.94319 0.97119 1.22039 0.90132 0.96776 0.92846 1.48419 1.38039 1.19919 1.26643 1.20490 0.79951 0.81194 0.86162 1.90654 1.34989 1.74441 1.48087 1.22282 1.10644 0.90497 0.98544 1.23031 0.96385 0.94543 1.03237 1.23018 0.95038 0.96874 1.04197 1.20415 0.87449 0.97367 0.88560 0.94230 0.91616 0.97817 0.90162 0.91608 0.91646 0.93591 0.88099 0.91866 0.90305 0.86400 0.82740 0.89912 0.84291 0.85093 0.90305 1.00149 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.22 11.20 21.65 0.24 -55.98 16 2 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 3 Si 0.97 44.45 29.59 68.60 2.03 46.48 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.25 -13.76 9.61 84.04 0.81 -12.95 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 9 N -0.60 -30.18 2.61 -699.78 -1.83 -32.01 16 10 C 0.14 6.07 6.52 86.30 0.56 6.64 16 11 C -0.12 -4.21 5.00 30.68 0.15 -4.06 16 12 C 0.16 5.87 2.65 44.96 0.12 5.99 16 13 H 0.06 2.45 7.06 -2.39 -0.02 2.43 16 14 C -0.10 -4.10 2.50 -10.87 -0.03 -4.13 16 15 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 16 C -0.10 -3.24 4.85 30.58 0.15 -3.09 16 17 C -0.13 -2.80 6.08 30.68 0.19 -2.62 16 18 C 0.10 2.08 5.85 86.34 0.50 2.58 16 19 N -0.60 -17.40 2.68 -794.14 -2.13 -19.53 16 20 C 0.53 16.11 7.50 87.66 0.66 16.76 16 21 O -0.60 -24.18 15.75 -3.05 -0.05 -24.23 16 22 C -0.20 -3.78 5.13 -11.54 -0.06 -3.84 16 23 C -0.13 -1.99 10.23 30.59 0.31 -1.68 16 24 C -0.15 -2.68 10.04 30.59 0.31 -2.37 16 25 C 0.19 9.43 4.70 86.23 0.41 9.84 16 26 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.07 2.66 7.94 -2.39 -0.02 2.64 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.08 2.60 5.25 -2.39 -0.01 2.59 16 30 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.06 2.31 6.03 -2.38 -0.01 2.30 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.49 7.22 -2.39 -0.02 1.47 16 36 H 0.12 1.50 5.53 -2.39 -0.01 1.49 16 37 H 0.16 1.93 6.59 -2.39 -0.02 1.92 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 1.84 7.67 -2.39 -0.02 1.82 16 42 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 43 H 0.06 3.42 6.06 -2.39 -0.01 3.40 16 Total: -1.00 -71.35 325.69 3.75 -67.60 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.99 Total: 12.92 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 4.50 Total: 4.73 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -3.71 Total: -107.51 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -71.35 3.75 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021488514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.523 kcal (2) G-P(sol) polarization free energy of solvation -71.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds