Wall clock time and date at job start Tue Mar 31 2020 00:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48497 * 109.47062 * 240.00189 * 3 2 1 5 5 H 1.48501 * 109.46865 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47121 * 120.00121 * 3 2 1 7 7 C 1.38810 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00249 * 179.72523 * 7 2 1 9 9 N 1.36937 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99807 * 179.72678 * 9 7 2 11 11 H 1.08998 * 112.85244 * 18.65063 * 10 9 7 12 12 C 1.53779 * 113.61059 * 149.96235 * 10 9 7 13 13 C 1.53785 * 87.08471 * 89.11700 * 12 10 9 14 14 H 1.09000 * 113.62019 * 139.97686 * 13 12 10 15 15 N 1.46500 * 113.68742 * 270.87554 * 13 12 10 16 16 C 1.34773 * 120.00037 * 182.99633 * 15 13 12 17 17 O 1.21618 * 120.00161 * 359.97438 * 16 15 13 18 18 C 1.47105 * 120.00167 * 179.97438 * 16 15 13 19 19 C 1.32997 * 119.99888 * 186.59139 * 18 16 15 20 20 C 1.51269 * 120.85244 * 12.46577 * 19 18 16 21 21 C 1.53659 * 108.30831 * 128.62051 * 20 19 18 22 22 C 1.52962 * 109.32337 * 54.86603 * 21 20 19 23 23 C 1.52960 * 109.81689 * 296.27046 * 22 21 20 24 24 C 1.51266 * 120.84489 * 192.75640 * 19 18 16 25 25 C 1.53782 * 113.61348 * 247.45649 * 10 9 7 26 26 H 0.96998 * 120.00221 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99846 * 359.73084 * 9 7 2 28 28 H 1.09001 * 113.60852 * 203.66002 * 12 10 9 29 29 H 1.09000 * 113.61880 * 334.56884 * 12 10 9 30 30 H 0.97000 * 120.00393 * 2.99256 * 15 13 12 31 31 H 1.07995 * 119.99968 * 6.58136 * 18 16 15 32 32 H 1.09003 * 109.62590 * 248.39674 * 20 19 18 33 33 H 1.08999 * 109.62238 * 8.96766 * 20 19 18 34 34 H 1.08994 * 109.63244 * 294.84399 * 21 20 19 35 35 H 1.09004 * 109.42716 * 174.75910 * 21 20 19 36 36 H 1.09000 * 109.41568 * 176.16430 * 22 21 20 37 37 H 1.09005 * 109.41590 * 56.37509 * 22 21 20 38 38 H 1.09000 * 109.47799 * 303.62027 * 23 22 21 39 39 H 1.08995 * 109.49537 * 183.58352 * 23 22 21 40 40 H 1.08996 * 109.63016 * 351.03591 * 24 19 18 41 41 H 1.08997 * 109.62781 * 111.61038 * 24 19 18 42 42 H 1.09005 * 113.61653 * 25.43571 * 25 10 9 43 43 H 1.08994 * 113.61493 * 156.33644 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0050 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0072 11 1 3.0955 -3.5482 0.3097 12 6 1.3130 -4.8019 0.6986 13 6 0.6613 -5.1099 -0.6599 14 1 0.5708 -6.1758 -0.8692 15 7 -0.5847 -4.3762 -0.8947 16 6 -1.2940 -4.5952 -2.0196 17 8 -0.8994 -5.4017 -2.8400 18 6 -2.5455 -3.8589 -2.2552 19 6 -3.3122 -4.1670 -3.2973 20 6 -3.0748 -5.4351 -4.0871 21 6 -4.4074 -6.1924 -4.1962 22 6 -5.4679 -5.2669 -4.7951 23 6 -5.7195 -4.0885 -3.8528 24 6 -4.4399 -3.2550 -3.7271 25 6 1.8925 -4.4569 -1.3099 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 0.0038 28 1 1.9698 -5.5944 1.0573 29 1 0.6058 -4.4619 1.4551 30 1 -0.8994 -3.7327 -0.2406 31 1 -2.8417 -3.0682 -1.5819 32 1 -2.7108 -5.1833 -5.0832 33 1 -2.3412 -6.0552 -3.5720 34 1 -4.7260 -6.5176 -3.2059 35 1 -4.2784 -7.0622 -4.8404 36 1 -6.3952 -5.8221 -4.9365 37 1 -5.1204 -4.8929 -5.7581 38 1 -6.0071 -4.4635 -2.8706 39 1 -6.5203 -3.4671 -4.2535 40 1 -4.5837 -2.4738 -2.9807 41 1 -4.2000 -2.8051 -4.6905 42 1 1.6531 -3.8383 -2.1749 43 1 2.7077 -5.1550 -1.5002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021879753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:20 Heat of formation + Delta-G solvation = 1.635096 kcal Electronic energy + Delta-G solvation = -21973.865566 eV Core-core repulsion = 18826.725311 eV Total energy + Delta-G solvation = -3147.140255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95195 -38.59627 -37.29603 -33.62658 -32.71188 -32.31231 -30.92682 -29.87111 -26.90403 -25.09667 -24.43014 -23.01694 -22.80655 -21.29269 -20.13695 -19.00673 -18.14348 -17.39795 -16.46823 -15.68206 -15.26559 -14.82676 -14.58824 -14.31776 -14.24633 -14.03993 -13.56305 -13.36789 -13.05004 -12.90140 -12.55879 -12.28559 -12.05007 -11.82604 -11.71837 -11.40485 -11.08828 -10.92938 -10.87000 -10.79703 -10.63634 -10.28523 -10.24855 -10.07933 -9.88417 -9.63271 -9.06992 -8.91806 -8.73889 -8.32834 -7.03468 -5.84516 -3.12581 1.63271 3.41165 3.45709 3.46335 3.59745 3.73838 4.53975 4.71607 4.73934 4.86966 5.02925 5.07834 5.18334 5.28645 5.34930 5.41475 5.45312 5.53573 5.57876 5.59472 5.64651 5.85880 5.91052 5.94757 5.95650 5.96867 6.06268 6.08604 6.16846 6.26665 6.29805 6.35397 6.41095 6.65711 6.72808 6.77516 6.82903 6.94787 7.22455 7.66361 8.02919 8.35377 8.72572 9.46049 10.02179 10.36429 11.38288 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.004540 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.196409 B = 6166.591583 C = 7412.007985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.703 5.703 10 C 0.165 3.835 11 H 0.067 0.933 12 C -0.167 4.167 13 C 0.128 3.872 14 H 0.079 0.921 15 N -0.696 5.696 16 C 0.553 3.447 17 O -0.550 6.550 18 C -0.218 4.218 19 C -0.033 4.033 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.093 4.093 25 C -0.183 4.183 26 H 0.256 0.744 27 H 0.382 0.618 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.405 0.595 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 -11.014 -4.777 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.343 5.343 10 C 0.053 3.947 11 H 0.085 0.915 12 C -0.207 4.207 13 C 0.022 3.978 14 H 0.097 0.903 15 N -0.347 5.347 16 C 0.343 3.657 17 O -0.432 6.432 18 C -0.239 4.239 19 C -0.035 4.035 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.130 4.130 25 C -0.225 4.225 26 H 0.066 0.934 27 H 0.217 0.783 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.241 0.759 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.789 -11.381 -5.303 15.326 hybrid contribution -0.030 1.442 0.280 1.469 sum -8.819 -9.939 -5.023 14.205 Atomic orbital electron populations 1.69618 1.05116 1.25947 1.57495 1.24728 0.95563 0.97727 1.02657 0.86235 0.78540 0.83326 0.77888 1.21236 1.21664 1.21205 1.19269 0.91158 0.83955 1.43075 0.90992 1.42195 1.05525 0.99482 1.87055 1.21184 0.95437 0.85635 0.92474 0.91526 1.23866 1.00409 1.00674 0.95740 1.21696 0.83866 0.94933 0.97273 0.90314 1.45692 1.23523 1.43400 1.22037 1.18464 0.84549 0.81611 0.81040 1.90555 1.70985 1.36805 1.44807 1.22419 0.96243 1.04142 1.01119 1.22577 0.93407 0.94505 0.92984 1.21648 0.98275 0.94858 1.00759 1.21670 0.94984 0.97885 1.00817 1.21563 0.98789 0.96673 0.98994 1.21567 0.96822 0.96869 1.00106 1.20945 0.93035 0.96712 1.02278 1.24223 0.96754 1.00203 1.01359 0.93379 0.78325 0.89222 0.91105 0.75874 0.85342 0.90995 0.86083 0.92176 0.91897 0.92272 0.91965 0.91806 0.91781 0.90609 0.89985 0.91190 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.65 9.96 -15.06 -0.15 -6.80 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 N -0.70 -17.12 5.22 -52.64 -0.27 -17.40 16 10 C 0.17 3.27 4.58 -67.12 -0.31 2.96 16 11 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 12 C -0.17 -2.68 7.55 -25.92 -0.20 -2.87 16 13 C 0.13 2.17 4.00 -67.11 -0.27 1.90 16 14 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 15 N -0.70 -12.27 4.69 -54.19 -0.25 -12.53 16 16 C 0.55 10.02 7.62 -12.66 -0.10 9.92 16 17 O -0.55 -10.91 13.15 5.26 0.07 -10.84 16 18 C -0.22 -3.47 9.65 -37.80 -0.36 -3.83 16 19 C -0.03 -0.46 5.38 -100.61 -0.54 -1.00 16 20 C -0.12 -1.63 5.32 -27.26 -0.14 -1.77 16 21 C -0.12 -1.26 5.95 -26.41 -0.16 -1.42 16 22 C -0.12 -1.16 5.81 -26.77 -0.16 -1.31 16 23 C -0.12 -1.11 5.94 -26.63 -0.16 -1.27 16 24 C -0.09 -1.06 6.04 -27.48 -0.17 -1.23 16 25 C -0.18 -3.41 7.68 -25.92 -0.20 -3.61 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.38 9.48 5.65 -40.82 -0.23 9.24 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.40 7.15 6.99 -40.82 -0.29 6.86 16 31 H 0.13 1.94 7.96 -52.49 -0.42 1.52 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.12 1.96 4.80 -52.84 -0.25 1.71 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -30.28 341.20 -9.67 -39.95 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -7.05 Total: 15.73 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.00 Total: -10.73 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.20 Total: -56.31 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.28 -9.67 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021879753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.583 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds