Wall clock time and date at job start Tue Mar 31 2020 00:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48497 * 109.47062 * 240.00189 * 3 2 1 5 5 H 1.48501 * 109.46865 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47121 * 120.00121 * 3 2 1 7 7 C 1.38810 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00249 * 179.72523 * 7 2 1 9 9 N 1.36937 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99807 * 179.72678 * 9 7 2 11 11 H 1.08998 * 112.85244 * 18.65063 * 10 9 7 12 12 C 1.53779 * 113.61059 * 149.96235 * 10 9 7 13 13 C 1.53785 * 87.08471 * 89.11700 * 12 10 9 14 14 H 1.09000 * 113.62019 * 139.97686 * 13 12 10 15 15 N 1.46500 * 113.68742 * 270.87554 * 13 12 10 16 16 C 1.34773 * 120.00037 * 182.99633 * 15 13 12 17 17 O 1.21618 * 120.00161 * 359.97438 * 16 15 13 18 18 C 1.47105 * 120.00167 * 179.97438 * 16 15 13 19 19 C 1.32997 * 119.99888 * 186.59139 * 18 16 15 20 20 C 1.51269 * 120.85244 * 12.46577 * 19 18 16 21 21 C 1.53659 * 108.30831 * 128.62051 * 20 19 18 22 22 C 1.52962 * 109.32337 * 54.86603 * 21 20 19 23 23 C 1.52960 * 109.81689 * 296.27046 * 22 21 20 24 24 C 1.51266 * 120.84489 * 192.75640 * 19 18 16 25 25 C 1.53782 * 113.61348 * 247.45649 * 10 9 7 26 26 H 0.96998 * 120.00221 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99846 * 359.73084 * 9 7 2 28 28 H 1.09001 * 113.60852 * 203.66002 * 12 10 9 29 29 H 1.09000 * 113.61880 * 334.56884 * 12 10 9 30 30 H 0.97000 * 120.00393 * 2.99256 * 15 13 12 31 31 H 1.07995 * 119.99968 * 6.58136 * 18 16 15 32 32 H 1.09003 * 109.62590 * 248.39674 * 20 19 18 33 33 H 1.08999 * 109.62238 * 8.96766 * 20 19 18 34 34 H 1.08994 * 109.63244 * 294.84399 * 21 20 19 35 35 H 1.09004 * 109.42716 * 174.75910 * 21 20 19 36 36 H 1.09000 * 109.41568 * 176.16430 * 22 21 20 37 37 H 1.09005 * 109.41590 * 56.37509 * 22 21 20 38 38 H 1.09000 * 109.47799 * 303.62027 * 23 22 21 39 39 H 1.08995 * 109.49537 * 183.58352 * 23 22 21 40 40 H 1.08996 * 109.63016 * 351.03591 * 24 19 18 41 41 H 1.08997 * 109.62781 * 111.61038 * 24 19 18 42 42 H 1.09005 * 113.61653 * 25.43571 * 25 10 9 43 43 H 1.08994 * 113.61493 * 156.33644 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0050 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0072 11 1 3.0955 -3.5482 0.3097 12 6 1.3130 -4.8019 0.6986 13 6 0.6613 -5.1099 -0.6599 14 1 0.5708 -6.1758 -0.8692 15 7 -0.5847 -4.3762 -0.8947 16 6 -1.2940 -4.5952 -2.0196 17 8 -0.8994 -5.4017 -2.8400 18 6 -2.5455 -3.8589 -2.2552 19 6 -3.3122 -4.1670 -3.2973 20 6 -3.0748 -5.4351 -4.0871 21 6 -4.4074 -6.1924 -4.1962 22 6 -5.4679 -5.2669 -4.7951 23 6 -5.7195 -4.0885 -3.8528 24 6 -4.4399 -3.2550 -3.7271 25 6 1.8925 -4.4569 -1.3099 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 0.0038 28 1 1.9698 -5.5944 1.0573 29 1 0.6058 -4.4619 1.4551 30 1 -0.8994 -3.7327 -0.2406 31 1 -2.8417 -3.0682 -1.5819 32 1 -2.7108 -5.1833 -5.0832 33 1 -2.3412 -6.0552 -3.5720 34 1 -4.7260 -6.5176 -3.2059 35 1 -4.2784 -7.0622 -4.8404 36 1 -6.3952 -5.8221 -4.9365 37 1 -5.1204 -4.8929 -5.7581 38 1 -6.0071 -4.4635 -2.8706 39 1 -6.5203 -3.4671 -4.2535 40 1 -4.5837 -2.4738 -2.9807 41 1 -4.2000 -2.8051 -4.6905 42 1 1.6531 -3.8383 -2.1749 43 1 2.7077 -5.1550 -1.5002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021879753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:19 Heat of formation + Delta-G solvation = -16.059828 kcal Electronic energy + Delta-G solvation = -21974.632875 eV Core-core repulsion = 18826.725311 eV Total energy + Delta-G solvation = -3147.907564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33999 -39.86275 -38.51129 -35.49258 -34.15395 -33.49485 -31.86471 -31.79335 -28.04255 -26.54498 -26.25779 -24.48511 -23.81578 -22.47970 -21.31461 -20.45722 -19.36861 -19.29645 -17.86454 -16.98955 -16.66370 -16.51301 -15.92339 -15.64835 -15.48245 -15.19740 -15.03413 -14.74196 -14.43313 -14.22282 -13.60507 -13.56298 -13.37736 -13.15122 -13.09149 -12.79537 -12.74899 -12.52219 -12.21158 -12.01411 -11.84662 -11.75844 -11.64699 -11.56032 -11.27178 -11.17975 -10.84674 -10.38702 -9.95557 -9.70899 -9.00500 -7.95782 -5.23094 0.40355 1.47529 1.49678 1.55454 2.23555 2.39989 2.56170 3.36409 3.61715 3.72519 3.79183 3.85097 3.99239 4.06660 4.07115 4.21493 4.32335 4.34238 4.41979 4.48473 4.50204 4.64205 4.78543 4.85532 4.88531 4.96659 5.00732 5.02158 5.10726 5.15827 5.17595 5.18891 5.23946 5.34096 5.40018 5.45722 5.51512 5.61383 5.71868 5.82484 6.28175 6.62320 7.31738 7.34786 8.09701 8.33576 9.27117 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.004540 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.196409 B = 6166.591583 C = 7412.007985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.717 5.717 10 C 0.146 3.854 11 H 0.070 0.930 12 C -0.141 4.141 13 C 0.127 3.873 14 H 0.091 0.909 15 N -0.698 5.698 16 C 0.546 3.454 17 O -0.574 6.574 18 C -0.250 4.250 19 C -0.015 4.015 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.095 4.095 25 C -0.177 4.177 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.403 0.597 31 H 0.130 0.870 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.029 0.971 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 -11.796 -4.958 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.356 5.356 10 C 0.035 3.965 11 H 0.088 0.912 12 C -0.180 4.180 13 C 0.021 3.979 14 H 0.109 0.891 15 N -0.348 5.348 16 C 0.338 3.662 17 O -0.458 6.458 18 C -0.271 4.271 19 C -0.017 4.017 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.132 4.132 25 C -0.219 4.219 26 H 0.061 0.939 27 H 0.210 0.790 28 H 0.147 0.853 29 H 0.087 0.913 30 H 0.239 0.761 31 H 0.148 0.852 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.279 -12.201 -5.473 16.276 hybrid contribution 0.169 1.601 0.271 1.633 sum -9.110 -10.600 -5.202 14.913 Atomic orbital electron populations 1.69759 1.06307 1.26154 1.59108 1.25470 0.96418 1.00737 1.03497 0.85265 0.77278 0.79504 0.78001 1.21028 1.22078 1.20269 1.19645 0.91557 0.85289 1.41630 0.90739 1.42340 1.05478 1.00404 1.87395 1.21486 0.95743 0.85136 0.94103 0.91204 1.23739 0.99907 0.99540 0.94807 1.21792 0.83127 0.95266 0.97674 0.89132 1.45773 1.23748 1.43330 1.21954 1.18860 0.85199 0.81395 0.80785 1.90547 1.71817 1.37935 1.45460 1.22398 0.96522 1.05189 1.02982 1.22977 0.92999 0.94339 0.91418 1.21599 0.99541 0.94628 1.00007 1.21649 0.93687 0.98278 1.01272 1.21568 0.99033 0.96372 0.98814 1.21575 0.96069 0.96925 1.00412 1.21056 0.93064 0.96557 1.02527 1.24166 0.98645 1.00095 0.98988 0.93936 0.78998 0.85343 0.91295 0.76104 0.85215 0.91182 0.88622 0.92323 0.90757 0.90228 0.91613 0.91839 0.89698 0.90490 0.89160 0.95197 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.97 13.06 21.65 0.28 -56.69 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.97 45.71 29.55 68.60 2.03 47.73 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.25 -13.73 9.96 84.03 0.84 -12.89 16 8 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 9 N -0.72 -35.29 5.22 -320.45 -1.67 -36.96 16 10 C 0.15 5.66 4.58 45.52 0.21 5.87 16 11 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 12 C -0.14 -4.23 7.55 31.12 0.23 -4.00 16 13 C 0.13 4.21 4.00 45.52 0.18 4.40 16 14 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 15 N -0.70 -25.16 4.69 -443.62 -2.08 -27.24 16 16 C 0.55 20.45 7.62 86.57 0.66 21.11 16 17 O -0.57 -23.46 13.15 -4.09 -0.05 -23.52 16 18 C -0.25 -8.21 9.65 23.43 0.23 -7.98 16 19 C -0.02 -0.43 5.38 -17.25 -0.09 -0.52 16 20 C -0.12 -3.31 5.32 30.25 0.16 -3.15 16 21 C -0.11 -2.25 5.95 30.80 0.18 -2.07 16 22 C -0.12 -1.95 5.81 30.57 0.18 -1.77 16 23 C -0.11 -1.89 5.94 30.66 0.18 -1.70 16 24 C -0.10 -2.06 6.04 30.11 0.18 -1.88 16 25 C -0.18 -6.51 7.68 31.12 0.24 -6.27 16 26 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.38 19.11 5.65 -92.71 -0.52 18.59 16 28 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.40 14.71 6.99 -92.71 -0.65 14.06 16 31 H 0.13 4.12 7.96 -2.91 -0.02 4.09 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 3.18 4.80 -16.76 -0.08 3.10 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.66 7.92 -2.39 -0.02 1.64 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -65.99 341.20 2.11 -63.88 By element: Atomic # 1 Polarization: 47.28 SS G_CDS: -0.24 Total: 47.04 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 3.85 Total: -14.24 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -3.47 Total: -120.89 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -65.99 2.11 -63.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021879753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.816 kcal (2) G-P(sol) polarization free energy of solvation -65.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds