Wall clock time and date at job start Mon Mar 30 2020 23:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00542 * 2 1 4 4 H 1.48496 * 109.47023 * 270.00045 * 3 2 1 5 5 H 1.48504 * 109.46618 * 29.99990 * 3 2 1 6 6 H 1.48499 * 109.47226 * 149.99617 * 3 2 1 7 7 C 1.38819 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99747 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00243 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.84323 * 23.80764 * 10 9 7 12 12 C 1.53779 * 113.61535 * 155.00190 * 10 9 7 13 13 C 1.53776 * 87.07931 * 89.20067 * 12 10 9 14 14 H 1.09000 * 113.61239 * 140.06530 * 13 12 10 15 15 N 1.46495 * 113.61953 * 270.88179 * 13 12 10 16 16 C 1.34773 * 120.00333 * 203.47320 * 15 13 12 17 17 O 1.21280 * 120.00180 * 0.02562 * 16 15 13 18 18 C 1.50710 * 120.00060 * 179.97438 * 16 15 13 19 19 C 1.50699 * 109.47186 * 180.02562 * 18 16 15 20 20 C 1.29439 * 117.96095 * 94.99697 * 19 18 16 21 21 C 1.50068 * 124.07470 * 180.51179 * 20 19 18 22 22 C 1.53025 * 110.03748 * 342.92034 * 21 20 19 23 23 C 1.53079 * 108.59654 * 49.47398 * 22 21 20 24 24 C 1.50068 * 117.96046 * 275.02271 * 19 18 16 25 25 C 1.53786 * 87.17342 * 25.47452 * 13 12 10 26 26 H 0.97008 * 119.99357 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00195 * 0.02562 * 9 7 2 28 28 H 1.09000 * 113.61242 * 334.65499 * 12 10 9 29 29 H 1.09000 * 113.69066 * 203.76289 * 12 10 9 30 30 H 0.97001 * 119.99790 * 23.46962 * 15 13 12 31 31 H 1.09002 * 109.46765 * 59.99639 * 18 16 15 32 32 H 1.08998 * 109.46978 * 300.00249 * 18 16 15 33 33 H 1.07995 * 117.96212 * 0.49769 * 20 19 18 34 34 H 1.09002 * 109.35724 * 103.06001 * 21 20 19 35 35 H 1.08998 * 109.35998 * 222.78642 * 21 20 19 36 36 H 1.08990 * 109.64476 * 169.04805 * 22 21 20 37 37 H 1.09003 * 109.64270 * 289.68198 * 22 21 20 38 38 H 1.08997 * 109.68954 * 172.84183 * 23 22 21 39 39 H 1.08996 * 109.63805 * 52.18057 * 23 22 21 40 40 H 1.08992 * 109.35733 * 283.05457 * 24 19 18 41 41 H 1.08997 * 109.36056 * 42.64348 * 24 19 18 42 42 H 1.08994 * 113.61134 * 89.07527 * 25 13 12 43 43 H 1.09004 * 113.61101 * 219.97382 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0578 -3.6569 0.0016 11 1 3.0657 -3.5638 0.4063 12 6 1.2603 -4.8286 0.5982 13 6 0.7213 -5.0808 -0.8198 14 1 0.6487 -6.1373 -1.0777 15 7 -0.5030 -4.3357 -1.1235 16 6 -1.3397 -4.7768 -2.0835 17 8 -1.0794 -5.7909 -2.6958 18 6 -2.5994 -4.0106 -2.3955 19 6 -3.3525 -4.7096 -3.4979 20 6 -4.2918 -5.5347 -3.1628 21 6 -5.1190 -6.3111 -4.1451 22 6 -4.9975 -5.6907 -5.5387 23 6 -3.5137 -5.4845 -5.8536 24 6 -2.9664 -4.4060 -4.9160 25 6 1.9996 -4.4052 -1.3436 26 1 -0.4849 0.8402 -0.0004 27 1 0.3554 -2.3881 0.0016 28 1 0.4935 -4.5182 1.3080 29 1 1.8862 -5.6363 0.9775 30 1 -0.7114 -3.5249 -0.6335 31 1 -2.3409 -3.0010 -2.7149 32 1 -3.2245 -3.9607 -1.5040 33 1 -4.4925 -5.6733 -2.1107 34 1 -4.7684 -7.3427 -4.1770 35 1 -6.1628 -6.2938 -3.8318 36 1 -5.4360 -6.3611 -6.2777 37 1 -5.5134 -4.7307 -5.5586 38 1 -3.3992 -5.1625 -6.8886 39 1 -2.9725 -6.4172 -5.6948 40 1 -3.3752 -3.4371 -5.2022 41 1 -1.8798 -4.3754 -4.9959 42 1 2.8283 -5.0968 -1.4948 43 1 1.8291 -3.7533 -2.2005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021901102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:44 Heat of formation + Delta-G solvation = -5.949580 kcal Electronic energy + Delta-G solvation = -21873.886363 eV Core-core repulsion = 18726.417212 eV Total energy + Delta-G solvation = -3147.469151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94916 -38.70228 -37.47849 -33.63079 -32.91453 -32.34114 -30.70500 -29.94222 -27.37734 -25.11523 -24.44045 -23.29043 -22.72354 -21.59155 -20.04405 -18.88966 -17.53173 -17.39568 -16.55423 -15.90107 -15.30208 -14.94638 -14.73657 -14.35490 -14.30474 -13.83535 -13.63451 -13.30165 -13.08300 -12.96536 -12.57938 -12.19208 -12.09408 -12.05286 -11.98966 -11.47357 -11.44060 -10.92356 -10.83221 -10.79423 -10.44165 -10.24598 -10.19166 -10.15509 -9.88878 -9.59020 -9.50291 -8.96013 -8.63484 -8.48889 -7.09590 -5.90020 -3.18467 2.30995 3.02897 3.37815 3.43593 3.44603 3.67195 4.50166 4.64802 4.73315 4.91397 5.06329 5.17637 5.22492 5.26913 5.30333 5.41676 5.42050 5.52799 5.58188 5.60477 5.64872 5.78813 5.83289 5.85105 5.93342 5.95583 5.98163 6.11752 6.14268 6.19791 6.28893 6.32329 6.34323 6.58511 6.70968 6.73176 6.84913 7.11804 7.16531 7.62980 7.97913 8.29910 8.65514 9.40289 9.94946 10.28451 11.32947 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.004157 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.020447 B = 6733.961976 C = 7627.199957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.704 5.704 10 C 0.164 3.836 11 H 0.066 0.934 12 C -0.168 4.168 13 C 0.124 3.876 14 H 0.088 0.912 15 N -0.703 5.703 16 C 0.519 3.481 17 O -0.548 6.548 18 C -0.115 4.115 19 C -0.088 4.088 20 C -0.158 4.158 21 C -0.084 4.084 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.081 4.081 25 C -0.187 4.187 26 H 0.257 0.743 27 H 0.379 0.621 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.407 0.593 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 -10.840 -6.084 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.207 4.207 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.344 5.344 10 C 0.052 3.948 11 H 0.084 0.916 12 C -0.208 4.208 13 C 0.019 3.981 14 H 0.106 0.894 15 N -0.356 5.356 16 C 0.305 3.695 17 O -0.426 6.426 18 C -0.154 4.154 19 C -0.089 4.089 20 C -0.176 4.176 21 C -0.121 4.121 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.118 4.118 25 C -0.229 4.229 26 H 0.067 0.933 27 H 0.214 0.786 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.245 0.755 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.485 -11.368 -6.474 15.071 hybrid contribution 0.118 1.394 0.333 1.438 sum -7.366 -9.973 -6.141 13.836 Atomic orbital electron populations 1.69620 1.05134 1.25969 1.57548 1.24737 0.95585 0.97790 1.02569 0.86145 0.78683 0.83522 0.77562 1.21657 1.21715 1.20687 1.19299 0.91233 0.83817 1.43034 0.90837 1.42211 1.05232 0.99668 1.87326 1.21248 0.95294 0.85519 0.92703 0.91628 1.23855 1.00762 1.00428 0.95733 1.21728 0.84291 0.95650 0.96441 0.89362 1.45910 1.22130 1.29058 1.38514 1.20500 0.84555 0.85107 0.79291 1.90647 1.75875 1.25569 1.50472 1.20886 0.94904 1.00591 0.99058 1.20296 0.95783 0.98036 0.94740 1.21799 0.98319 0.98275 0.99229 1.20372 0.98930 0.98959 0.93869 1.21550 0.96842 1.00860 0.96485 1.21514 0.95837 0.99547 0.98593 1.20356 1.01397 0.98566 0.91508 1.24322 0.96519 1.00258 1.01838 0.93337 0.78592 0.91135 0.89239 0.75456 0.87867 0.88529 0.88231 0.91138 0.91488 0.92085 0.91851 0.91954 0.91557 0.91108 0.90804 0.90570 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.51 13.06 55.49 0.72 -25.79 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.24 -6.47 9.97 -15.06 -0.15 -6.62 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 9 N -0.70 -16.65 5.19 -52.50 -0.27 -16.93 16 10 C 0.16 3.18 4.57 -66.98 -0.31 2.87 16 11 H 0.07 1.26 8.10 -51.93 -0.42 0.83 16 12 C -0.17 -2.70 7.58 -25.92 -0.20 -2.90 16 13 C 0.12 2.12 4.29 -67.12 -0.29 1.83 16 14 H 0.09 1.51 7.50 -51.93 -0.39 1.12 16 15 N -0.70 -12.25 5.12 -53.02 -0.27 -12.52 16 16 C 0.52 8.99 7.82 -10.98 -0.09 8.91 16 17 O -0.55 -10.88 15.65 5.56 0.09 -10.79 16 18 C -0.11 -1.65 5.71 -29.03 -0.17 -1.82 16 19 C -0.09 -1.21 4.33 -100.94 -0.44 -1.65 16 20 C -0.16 -2.00 9.37 -35.90 -0.34 -2.34 16 21 C -0.08 -0.89 6.13 -28.18 -0.17 -1.06 16 22 C -0.12 -1.18 5.98 -26.68 -0.16 -1.34 16 23 C -0.12 -1.32 6.01 -26.68 -0.16 -1.48 16 24 C -0.08 -1.05 5.79 -28.17 -0.16 -1.21 16 25 C -0.19 -3.36 7.70 -25.78 -0.20 -3.56 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.38 9.12 5.35 -40.82 -0.22 8.90 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.41 7.38 6.17 -40.82 -0.25 7.13 16 31 H 0.10 1.48 8.12 -51.93 -0.42 1.06 16 32 H 0.10 1.22 7.79 -51.93 -0.40 0.82 16 33 H 0.10 1.21 7.74 -52.49 -0.41 0.81 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -29.94 345.21 -9.60 -39.54 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -7.13 Total: 15.40 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.92 Total: -10.76 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.18 Total: -55.24 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.94 -9.60 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021901102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.592 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds