Wall clock time and date at job start Mon Mar 30 2020 23:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00542 * 2 1 4 4 H 1.48496 * 109.47023 * 270.00045 * 3 2 1 5 5 H 1.48504 * 109.46618 * 29.99990 * 3 2 1 6 6 H 1.48499 * 109.47226 * 149.99617 * 3 2 1 7 7 C 1.38819 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99747 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00243 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.84323 * 23.80764 * 10 9 7 12 12 C 1.53779 * 113.61535 * 155.00190 * 10 9 7 13 13 C 1.53776 * 87.07931 * 89.20067 * 12 10 9 14 14 H 1.09000 * 113.61239 * 140.06530 * 13 12 10 15 15 N 1.46495 * 113.61953 * 270.88179 * 13 12 10 16 16 C 1.34773 * 120.00333 * 203.47320 * 15 13 12 17 17 O 1.21280 * 120.00180 * 0.02562 * 16 15 13 18 18 C 1.50710 * 120.00060 * 179.97438 * 16 15 13 19 19 C 1.50699 * 109.47186 * 180.02562 * 18 16 15 20 20 C 1.29439 * 117.96095 * 94.99697 * 19 18 16 21 21 C 1.50068 * 124.07470 * 180.51179 * 20 19 18 22 22 C 1.53025 * 110.03748 * 342.92034 * 21 20 19 23 23 C 1.53079 * 108.59654 * 49.47398 * 22 21 20 24 24 C 1.50068 * 117.96046 * 275.02271 * 19 18 16 25 25 C 1.53786 * 87.17342 * 25.47452 * 13 12 10 26 26 H 0.97008 * 119.99357 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00195 * 0.02562 * 9 7 2 28 28 H 1.09000 * 113.61242 * 334.65499 * 12 10 9 29 29 H 1.09000 * 113.69066 * 203.76289 * 12 10 9 30 30 H 0.97001 * 119.99790 * 23.46962 * 15 13 12 31 31 H 1.09002 * 109.46765 * 59.99639 * 18 16 15 32 32 H 1.08998 * 109.46978 * 300.00249 * 18 16 15 33 33 H 1.07995 * 117.96212 * 0.49769 * 20 19 18 34 34 H 1.09002 * 109.35724 * 103.06001 * 21 20 19 35 35 H 1.08998 * 109.35998 * 222.78642 * 21 20 19 36 36 H 1.08990 * 109.64476 * 169.04805 * 22 21 20 37 37 H 1.09003 * 109.64270 * 289.68198 * 22 21 20 38 38 H 1.08997 * 109.68954 * 172.84183 * 23 22 21 39 39 H 1.08996 * 109.63805 * 52.18057 * 23 22 21 40 40 H 1.08992 * 109.35733 * 283.05457 * 24 19 18 41 41 H 1.08997 * 109.36056 * 42.64348 * 24 19 18 42 42 H 1.08994 * 113.61134 * 89.07527 * 25 13 12 43 43 H 1.09004 * 113.61101 * 219.97382 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0578 -3.6569 0.0016 11 1 3.0657 -3.5638 0.4063 12 6 1.2603 -4.8286 0.5982 13 6 0.7213 -5.0808 -0.8198 14 1 0.6487 -6.1373 -1.0777 15 7 -0.5030 -4.3357 -1.1235 16 6 -1.3397 -4.7768 -2.0835 17 8 -1.0794 -5.7909 -2.6958 18 6 -2.5994 -4.0106 -2.3955 19 6 -3.3525 -4.7096 -3.4979 20 6 -4.2918 -5.5347 -3.1628 21 6 -5.1190 -6.3111 -4.1451 22 6 -4.9975 -5.6907 -5.5387 23 6 -3.5137 -5.4845 -5.8536 24 6 -2.9664 -4.4060 -4.9160 25 6 1.9996 -4.4052 -1.3436 26 1 -0.4849 0.8402 -0.0004 27 1 0.3554 -2.3881 0.0016 28 1 0.4935 -4.5182 1.3080 29 1 1.8862 -5.6363 0.9775 30 1 -0.7114 -3.5249 -0.6335 31 1 -2.3409 -3.0010 -2.7149 32 1 -3.2245 -3.9607 -1.5040 33 1 -4.4925 -5.6733 -2.1107 34 1 -4.7684 -7.3427 -4.1770 35 1 -6.1628 -6.2938 -3.8318 36 1 -5.4360 -6.3611 -6.2777 37 1 -5.5134 -4.7307 -5.5586 38 1 -3.3992 -5.1625 -6.8886 39 1 -2.9725 -6.4172 -5.6948 40 1 -3.3752 -3.4371 -5.2022 41 1 -1.8798 -4.3754 -4.9959 42 1 2.8283 -5.0968 -1.4948 43 1 1.8291 -3.7533 -2.2005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021901102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:44 Heat of formation + Delta-G solvation = -23.021964 kcal Electronic energy + Delta-G solvation = -21874.626678 eV Core-core repulsion = 18726.417212 eV Total energy + Delta-G solvation = -3148.209465 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32226 -39.89604 -38.74690 -35.47939 -34.22858 -33.59403 -31.82493 -31.62719 -28.50694 -26.56062 -26.24102 -24.44658 -24.02599 -22.63710 -21.40674 -20.40083 -19.26674 -18.47857 -17.99673 -17.12092 -16.70736 -16.43506 -16.15874 -15.84673 -15.55666 -15.10198 -14.87143 -14.70888 -14.41478 -14.37131 -13.59766 -13.54491 -13.31215 -13.22912 -13.11457 -12.99551 -12.80403 -12.60108 -12.54158 -12.16223 -11.78350 -11.71287 -11.65665 -11.34226 -11.15854 -11.10414 -10.90303 -10.81702 -9.92689 -9.65992 -9.02025 -7.96631 -5.24031 1.26468 1.49006 1.49664 1.57638 1.64577 2.34105 2.56711 3.36527 3.63450 3.65967 3.78896 3.87241 3.90487 4.04524 4.07924 4.25881 4.31465 4.34367 4.40802 4.46920 4.56281 4.66932 4.73108 4.75775 4.85277 4.87305 4.95502 5.00355 5.03751 5.06470 5.09943 5.18408 5.22203 5.32460 5.37072 5.47418 5.52531 5.73545 5.75376 6.11166 6.27513 6.57018 7.25187 7.34138 8.06871 8.30318 9.26413 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.004157 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.020447 B = 6733.961976 C = 7627.199957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.716 5.716 10 C 0.147 3.853 11 H 0.069 0.931 12 C -0.145 4.145 13 C 0.122 3.878 14 H 0.093 0.907 15 N -0.705 5.705 16 C 0.516 3.484 17 O -0.575 6.575 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.153 4.153 21 C -0.087 4.087 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.082 4.082 25 C -0.179 4.179 26 H 0.252 0.748 27 H 0.374 0.626 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.404 0.596 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -11.764 -6.043 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.356 5.356 10 C 0.037 3.963 11 H 0.087 0.913 12 C -0.184 4.184 13 C 0.016 3.984 14 H 0.111 0.889 15 N -0.357 5.357 16 C 0.304 3.696 17 O -0.455 6.455 18 C -0.150 4.150 19 C -0.112 4.112 20 C -0.171 4.171 21 C -0.124 4.124 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.119 4.119 25 C -0.221 4.221 26 H 0.061 0.939 27 H 0.208 0.792 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.241 0.759 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.737 -12.325 -6.427 15.908 hybrid contribution 0.257 1.604 0.323 1.656 sum -7.480 -10.721 -6.104 14.428 Atomic orbital electron populations 1.69746 1.06244 1.26161 1.59148 1.25442 0.96408 1.00647 1.03463 0.85208 0.77836 0.79909 0.77181 1.21871 1.22150 1.19628 1.19639 0.91576 0.85100 1.41500 0.90662 1.42342 1.05210 1.00495 1.87583 1.21517 0.95651 0.84996 0.94142 0.91281 1.23753 1.00221 0.99540 0.94873 1.21808 0.83806 0.95634 0.97121 0.88913 1.46008 1.22382 1.28847 1.38472 1.21003 0.85163 0.84848 0.78589 1.90621 1.76656 1.26894 1.51334 1.20901 0.93925 0.99936 1.00237 1.20373 0.96703 0.99329 0.94762 1.22095 0.97709 0.97182 1.00120 1.20462 0.99626 0.98529 0.93745 1.21550 0.95659 1.01571 0.96570 1.21510 0.96761 0.98137 0.98943 1.20359 0.99896 0.99822 0.91858 1.24256 0.98161 1.00062 0.99593 0.93868 0.79171 0.91538 0.85636 0.75888 0.88296 0.86863 0.87903 0.91029 0.89456 0.90132 0.91356 0.90541 0.93078 0.90220 0.93348 0.87752 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.34 13.06 21.65 0.28 -55.05 16 2 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.97 44.72 29.55 68.60 2.03 46.75 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.25 -13.14 9.97 84.04 0.84 -12.30 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.72 -33.92 5.19 -320.01 -1.66 -35.58 16 10 C 0.15 5.53 4.57 45.61 0.21 5.74 16 11 H 0.07 2.54 8.10 -2.39 -0.02 2.52 16 12 C -0.14 -4.35 7.58 31.12 0.24 -4.11 16 13 C 0.12 4.02 4.29 45.52 0.20 4.22 16 14 H 0.09 3.03 7.50 -2.39 -0.02 3.01 16 15 N -0.70 -24.67 5.12 -440.04 -2.25 -26.92 16 16 C 0.52 18.09 7.82 87.66 0.69 18.77 16 17 O -0.58 -23.08 15.65 -3.03 -0.05 -23.12 16 18 C -0.11 -3.21 5.71 29.10 0.17 -3.05 16 19 C -0.11 -3.04 4.33 -15.09 -0.07 -3.10 16 20 C -0.15 -3.71 9.37 27.04 0.25 -3.45 16 21 C -0.09 -1.65 6.13 29.66 0.18 -1.47 16 22 C -0.12 -2.05 5.98 30.63 0.18 -1.87 16 23 C -0.12 -2.51 6.01 30.63 0.18 -2.33 16 24 C -0.08 -2.14 5.79 29.66 0.17 -1.97 16 25 C -0.18 -6.26 7.70 31.21 0.24 -6.02 16 26 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 27 H 0.37 18.22 5.35 -92.71 -0.50 17.73 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.40 14.85 6.17 -92.71 -0.57 14.28 16 31 H 0.10 2.94 8.12 -2.39 -0.02 2.92 16 32 H 0.11 2.84 7.79 -2.39 -0.02 2.83 16 33 H 0.10 2.37 7.74 -2.91 -0.02 2.35 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.25 8.12 -2.39 -0.02 1.23 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -63.99 345.21 2.22 -61.76 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -0.07 Total: 46.31 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.94 Total: -14.13 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -3.63 Total: -117.56 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.99 2.22 -61.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021901102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.743 kcal (2) G-P(sol) polarization free energy of solvation -63.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds