Wall clock time and date at job start Tue Mar 31 2020 00:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48499 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47082 * 299.99744 * 3 2 1 6 6 H 1.48501 * 109.46842 * 59.99712 * 3 2 1 7 7 C 1.38811 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00237 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99969 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85109 * 336.19386 * 10 9 7 12 12 C 1.53782 * 113.69062 * 107.46974 * 10 9 7 13 13 C 1.53784 * 87.08125 * 139.98719 * 12 10 9 14 14 H 1.09003 * 113.69054 * 89.12683 * 13 12 10 15 15 N 1.46503 * 113.61516 * 220.01441 * 13 12 10 16 16 C 1.34772 * 120.00018 * 252.50287 * 15 13 12 17 17 O 1.21282 * 120.00173 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99824 * 180.02562 * 16 15 13 19 19 H 1.09000 * 115.57383 * 325.84903 * 18 16 15 20 20 C 1.49176 * 117.72396 * 110.96520 * 18 16 15 21 21 H 1.09003 * 116.23346 * 0.91983 * 20 18 16 22 22 C 1.52487 * 121.53978 * 216.79916 * 20 18 16 23 23 C 1.52874 * 110.03265 * 311.50759 * 22 20 18 24 24 C 1.53301 * 108.73970 * 303.99828 * 23 22 20 25 25 C 1.52879 * 108.58161 * 74.35081 * 24 23 22 26 26 C 1.52075 * 61.32616 * 107.53794 * 20 18 16 27 27 H 1.08990 * 117.25447 * 253.34960 * 26 20 18 28 28 C 1.53774 * 87.08184 * 334.56631 * 13 12 10 29 29 H 0.96997 * 120.00225 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99766 * 0.02562 * 9 7 2 31 31 H 1.09000 * 113.61432 * 25.43934 * 12 10 9 32 32 H 1.09001 * 113.61217 * 254.53797 * 12 10 9 33 33 H 0.97001 * 119.99454 * 72.50300 * 15 13 12 34 34 H 1.08998 * 110.48355 * 190.76891 * 22 20 18 35 35 H 1.08999 * 108.52744 * 71.02252 * 22 20 18 36 36 H 1.09002 * 109.61727 * 184.17623 * 23 22 20 37 37 H 1.08998 * 109.61587 * 63.81744 * 23 22 20 38 38 H 1.08997 * 109.61828 * 194.08130 * 24 23 22 39 39 H 1.08998 * 109.61975 * 314.44120 * 24 23 22 40 40 H 1.09004 * 109.35389 * 65.69118 * 25 24 23 41 41 H 1.08996 * 109.35969 * 185.26555 * 25 24 23 42 42 H 1.09001 * 113.61382 * 139.97695 * 28 13 12 43 43 H 1.08994 * 113.61814 * 270.87904 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 3.0655 -3.5642 -0.4028 12 6 2.0009 -4.4021 1.3467 13 6 1.8495 -5.6977 0.5322 14 1 2.7994 -6.1642 0.2709 15 7 0.8902 -6.6438 1.1073 16 6 1.3292 -7.7709 1.7018 17 8 2.5183 -8.0021 1.7602 18 6 0.3423 -8.7444 2.2929 19 1 -0.5519 -8.3006 2.7305 20 6 0.1829 -10.0659 1.6195 21 1 0.8110 -10.2405 0.7459 22 6 -1.1759 -10.7506 1.5180 23 6 -1.8622 -10.7574 2.8840 24 6 -0.9319 -11.4311 3.8993 25 6 0.2038 -10.4646 4.2356 26 6 0.9046 -10.0109 2.9570 27 1 1.9867 -10.1404 2.9459 28 6 1.2601 -4.8293 -0.5917 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 1.1231 -4.1573 1.9447 32 1 2.9296 -4.3495 1.9149 33 1 -0.0608 -6.4590 1.0603 34 1 -1.0608 -11.7765 1.1683 35 1 -1.7910 -10.1963 0.8092 36 1 -2.7981 -11.3125 2.8206 37 1 -2.0648 -9.7331 3.1968 38 1 -1.4898 -11.6696 4.8048 39 1 -0.5228 -12.3457 3.4701 40 1 -0.2027 -9.5954 4.7528 41 1 0.9234 -10.9643 4.8841 42 1 1.5907 -5.1216 -1.5884 43 1 0.1798 -4.7014 -0.5237 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021933522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:35 Heat of formation + Delta-G solvation = -2.155080 kcal Electronic energy + Delta-G solvation = -21216.193062 eV Core-core repulsion = 18068.888452 eV Total energy + Delta-G solvation = -3147.304609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.69740 -39.11287 -37.61535 -34.05925 -33.45249 -32.60855 -31.07853 -29.88580 -26.07882 -25.11897 -24.39726 -22.98862 -22.83861 -21.31281 -20.21471 -19.34090 -18.65800 -17.48182 -17.08877 -16.20279 -15.56255 -14.87967 -14.75947 -14.52965 -14.33132 -14.23670 -13.94855 -13.65999 -13.04719 -12.88806 -12.61308 -12.46603 -12.11590 -12.02500 -11.91139 -11.46135 -11.27293 -11.18643 -10.94138 -10.65636 -10.57176 -10.49568 -10.31809 -10.13862 -10.03682 -10.02330 -9.71222 -9.49704 -8.91985 -8.72226 -6.99390 -5.81295 -3.10090 2.54746 3.23059 3.41530 3.47760 3.49718 3.61881 4.33800 4.41760 4.51311 4.57710 4.68311 4.79571 4.85630 5.00144 5.05726 5.13599 5.21982 5.24297 5.28516 5.37342 5.40363 5.47273 5.62201 5.63774 5.68949 5.80242 5.86366 5.90229 5.95324 5.98633 5.99071 6.12661 6.13776 6.25200 6.31118 6.53358 6.61384 6.76312 7.06821 7.67978 7.68550 8.34928 8.37375 9.48703 10.05353 10.39978 11.41231 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037690 B = 0.002774 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.723131 B =10090.841040 C =10259.484415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.108 0.892 15 N -0.710 5.710 16 C 0.540 3.460 17 O -0.547 6.547 18 C -0.184 4.184 19 H 0.121 0.879 20 C -0.112 4.112 21 H 0.100 0.900 22 C -0.090 4.090 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.090 4.090 26 C -0.117 4.117 27 H 0.116 0.884 28 C -0.158 4.158 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 -23.596 5.015 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.359 5.359 16 C 0.327 3.673 17 O -0.425 6.425 18 C -0.205 4.205 19 H 0.139 0.861 20 C -0.131 4.131 21 H 0.118 0.882 22 C -0.127 4.127 23 C -0.163 4.163 24 C -0.157 4.157 25 C -0.127 4.127 26 C -0.135 4.135 27 H 0.134 0.866 28 C -0.198 4.198 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.037 -23.553 5.026 24.274 hybrid contribution -0.409 1.207 0.010 1.275 sum -3.446 -22.345 5.036 23.164 Atomic orbital electron populations 1.69665 1.05153 1.25666 1.57638 1.24770 0.95547 0.97827 1.02799 0.86105 0.78859 0.83979 0.77186 1.20467 1.21822 1.21837 1.19367 0.91187 0.84134 1.42727 0.90929 1.42364 1.05691 0.99787 1.86993 1.21350 0.95473 0.84928 0.92648 0.90235 1.24330 1.01820 0.95188 1.00502 1.22496 0.93284 0.87472 0.95520 0.87405 1.45996 1.10484 1.21338 1.58057 1.19693 0.88661 0.81474 0.77500 1.90670 1.17048 1.76220 1.58579 1.21990 1.01518 0.90164 1.06834 0.86106 1.21324 0.98802 0.96291 0.96634 0.88179 1.20992 0.93763 1.00403 0.97528 1.21646 0.98261 1.01213 0.95153 1.21567 0.96541 0.98552 0.98990 1.21063 0.97284 0.99307 0.95082 1.22313 1.00132 0.97818 0.93272 0.86616 1.23859 1.01188 0.97341 0.97445 0.93501 0.78102 0.90230 0.92274 0.76608 0.90838 0.91355 0.91695 0.91742 0.91852 0.91607 0.91421 0.91225 0.91532 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.54 16 9 N -0.71 -17.62 5.40 -52.64 -0.28 -17.90 16 10 C 0.17 3.32 4.48 -67.12 -0.30 3.02 16 11 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 12 C -0.18 -3.15 7.68 -25.92 -0.20 -3.35 16 13 C 0.12 1.81 4.24 -67.12 -0.28 1.52 16 14 H 0.11 1.75 7.46 -51.93 -0.39 1.37 16 15 N -0.71 -9.48 5.35 -53.02 -0.28 -9.76 16 16 C 0.54 7.63 7.59 -10.99 -0.08 7.54 16 17 O -0.55 -9.76 15.86 5.56 0.09 -9.67 16 18 C -0.18 -1.94 5.24 -93.31 -0.49 -2.42 16 19 H 0.12 1.09 7.27 -51.93 -0.38 0.72 16 20 C -0.11 -1.02 5.51 -93.23 -0.51 -1.54 16 21 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 22 C -0.09 -0.63 6.01 -27.06 -0.16 -0.79 16 23 C -0.13 -0.81 5.69 -26.64 -0.15 -0.96 16 24 C -0.12 -0.78 5.93 -26.64 -0.16 -0.93 16 25 C -0.09 -0.70 5.83 -26.94 -0.16 -0.86 16 26 C -0.12 -1.15 5.82 -90.90 -0.53 -1.68 16 27 H 0.12 1.34 7.66 -51.93 -0.40 0.94 16 28 C -0.16 -2.53 7.58 -25.92 -0.20 -2.72 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.38 10.03 7.92 -40.82 -0.32 9.71 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 4.44 8.73 -40.82 -0.36 4.09 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.44 7.12 -51.93 -0.37 0.07 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 40 H 0.07 0.53 8.06 -51.93 -0.42 0.12 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -31.64 345.50 -10.28 -41.92 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -7.24 Total: 10.66 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -3.47 Total: -10.53 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.16 Total: -54.88 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.64 -10.28 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021933522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.765 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds