Wall clock time and date at job start Tue Mar 31 2020 00:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48499 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47082 * 299.99744 * 3 2 1 6 6 H 1.48501 * 109.46842 * 59.99712 * 3 2 1 7 7 C 1.38811 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00237 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99969 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85109 * 336.19386 * 10 9 7 12 12 C 1.53782 * 113.69062 * 107.46974 * 10 9 7 13 13 C 1.53784 * 87.08125 * 139.98719 * 12 10 9 14 14 H 1.09003 * 113.69054 * 89.12683 * 13 12 10 15 15 N 1.46503 * 113.61516 * 220.01441 * 13 12 10 16 16 C 1.34772 * 120.00018 * 252.50287 * 15 13 12 17 17 O 1.21282 * 120.00173 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99824 * 180.02562 * 16 15 13 19 19 H 1.09000 * 115.57383 * 325.84903 * 18 16 15 20 20 C 1.49176 * 117.72396 * 110.96520 * 18 16 15 21 21 H 1.09003 * 116.23346 * 0.91983 * 20 18 16 22 22 C 1.52487 * 121.53978 * 216.79916 * 20 18 16 23 23 C 1.52874 * 110.03265 * 311.50759 * 22 20 18 24 24 C 1.53301 * 108.73970 * 303.99828 * 23 22 20 25 25 C 1.52879 * 108.58161 * 74.35081 * 24 23 22 26 26 C 1.52075 * 61.32616 * 107.53794 * 20 18 16 27 27 H 1.08990 * 117.25447 * 253.34960 * 26 20 18 28 28 C 1.53774 * 87.08184 * 334.56631 * 13 12 10 29 29 H 0.96997 * 120.00225 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99766 * 0.02562 * 9 7 2 31 31 H 1.09000 * 113.61432 * 25.43934 * 12 10 9 32 32 H 1.09001 * 113.61217 * 254.53797 * 12 10 9 33 33 H 0.97001 * 119.99454 * 72.50300 * 15 13 12 34 34 H 1.08998 * 110.48355 * 190.76891 * 22 20 18 35 35 H 1.08999 * 108.52744 * 71.02252 * 22 20 18 36 36 H 1.09002 * 109.61727 * 184.17623 * 23 22 20 37 37 H 1.08998 * 109.61587 * 63.81744 * 23 22 20 38 38 H 1.08997 * 109.61828 * 194.08130 * 24 23 22 39 39 H 1.08998 * 109.61975 * 314.44120 * 24 23 22 40 40 H 1.09004 * 109.35389 * 65.69118 * 25 24 23 41 41 H 1.08996 * 109.35969 * 185.26555 * 25 24 23 42 42 H 1.09001 * 113.61382 * 139.97695 * 28 13 12 43 43 H 1.08994 * 113.61814 * 270.87904 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 3.0655 -3.5642 -0.4028 12 6 2.0009 -4.4021 1.3467 13 6 1.8495 -5.6977 0.5322 14 1 2.7994 -6.1642 0.2709 15 7 0.8902 -6.6438 1.1073 16 6 1.3292 -7.7709 1.7018 17 8 2.5183 -8.0021 1.7602 18 6 0.3423 -8.7444 2.2929 19 1 -0.5519 -8.3006 2.7305 20 6 0.1829 -10.0659 1.6195 21 1 0.8110 -10.2405 0.7459 22 6 -1.1759 -10.7506 1.5180 23 6 -1.8622 -10.7574 2.8840 24 6 -0.9319 -11.4311 3.8993 25 6 0.2038 -10.4646 4.2356 26 6 0.9046 -10.0109 2.9570 27 1 1.9867 -10.1404 2.9459 28 6 1.2601 -4.8293 -0.5917 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 1.1231 -4.1573 1.9447 32 1 2.9296 -4.3495 1.9149 33 1 -0.0608 -6.4590 1.0603 34 1 -1.0608 -11.7765 1.1683 35 1 -1.7910 -10.1963 0.8092 36 1 -2.7981 -11.3125 2.8206 37 1 -2.0648 -9.7331 3.1968 38 1 -1.4898 -11.6696 4.8048 39 1 -0.5228 -12.3457 3.4701 40 1 -0.2027 -9.5954 4.7528 41 1 0.9234 -10.9643 4.8841 42 1 1.5907 -5.1216 -1.5884 43 1 0.1798 -4.7014 -0.5237 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021933522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:34 Heat of formation + Delta-G solvation = -21.525089 kcal Electronic energy + Delta-G solvation = -21217.033008 eV Core-core repulsion = 18068.888452 eV Total energy + Delta-G solvation = -3148.144556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64847 -40.27968 -38.86070 -35.79194 -34.33779 -33.96868 -31.81380 -31.65821 -27.16027 -26.55752 -26.00974 -24.19715 -23.43620 -22.54140 -21.35776 -20.63033 -19.50993 -19.11184 -18.34332 -17.59337 -16.60585 -16.27450 -16.06251 -15.81706 -15.43418 -14.98919 -14.87480 -14.83473 -14.53334 -14.39123 -13.65291 -13.33806 -13.21275 -13.17714 -13.10663 -12.86250 -12.71303 -12.22662 -12.20070 -12.08043 -12.06153 -11.78007 -11.73450 -11.53139 -11.18020 -10.92747 -10.89403 -10.83373 -10.53425 -10.00140 -9.00389 -7.96694 -5.24900 1.46414 1.47590 1.47838 1.57834 2.14918 2.56013 2.79376 3.35002 3.55647 3.67618 3.69034 3.80167 3.88032 3.94647 4.00345 4.07911 4.20313 4.25540 4.29067 4.36972 4.42557 4.62086 4.69940 4.70552 4.84749 4.85912 4.87713 4.99084 5.06959 5.10515 5.11926 5.12778 5.27568 5.32801 5.35316 5.38331 5.44034 5.50278 5.55284 5.65945 6.25976 6.57615 7.23846 7.32496 8.07430 8.31335 9.26627 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037690 B = 0.002774 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.723131 B =10090.841040 C =10259.484415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.151 3.849 11 H 0.078 0.922 12 C -0.170 4.170 13 C 0.134 3.866 14 H 0.103 0.897 15 N -0.701 5.701 16 C 0.537 3.463 17 O -0.589 6.589 18 C -0.187 4.187 19 H 0.141 0.859 20 C -0.100 4.100 21 H 0.088 0.912 22 C -0.086 4.086 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.088 4.088 26 C -0.120 4.120 27 H 0.093 0.907 28 C -0.138 4.138 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.413 0.587 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 -24.981 5.139 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.040 3.960 11 H 0.096 0.904 12 C -0.212 4.212 13 C 0.029 3.971 14 H 0.121 0.879 15 N -0.351 5.351 16 C 0.325 3.675 17 O -0.470 6.470 18 C -0.208 4.208 19 H 0.158 0.842 20 C -0.118 4.118 21 H 0.106 0.894 22 C -0.124 4.124 23 C -0.162 4.162 24 C -0.154 4.154 25 C -0.125 4.125 26 C -0.139 4.139 27 H 0.111 0.889 28 C -0.178 4.178 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.768 -24.982 5.149 25.784 hybrid contribution -0.111 1.556 -0.016 1.560 sum -3.879 -23.426 5.133 24.293 Atomic orbital electron populations 1.69803 1.06504 1.26039 1.59514 1.25544 0.96413 1.01027 1.03705 0.85104 0.78246 0.79944 0.76661 1.19185 1.21913 1.22136 1.19728 0.91543 0.85378 1.40999 0.90661 1.42501 1.05399 1.00760 1.87437 1.21654 0.95750 0.84184 0.94404 0.90362 1.24169 1.01141 0.96428 0.99508 1.22140 0.93625 0.86945 0.94424 0.87878 1.45882 1.10880 1.20781 1.57555 1.20304 0.88713 0.81708 0.76724 1.90652 1.19044 1.77115 1.60151 1.21975 1.01296 0.89871 1.07676 0.84174 1.21375 0.99845 0.94934 0.95693 0.89365 1.21027 0.92303 1.00759 0.98277 1.21663 0.98693 1.01332 0.94532 1.21564 0.96055 0.98122 0.99636 1.21079 0.97788 0.99759 0.93923 1.22350 0.99290 0.97416 0.94830 0.88906 1.23659 1.01028 0.94875 0.98241 0.93963 0.79164 0.91027 0.92967 0.75012 0.89796 0.90640 0.90313 0.91957 0.90670 0.91431 0.91341 0.90886 0.89932 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 3 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -13.54 9.97 84.03 0.84 -12.71 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.72 -35.96 5.40 -320.45 -1.73 -37.70 16 10 C 0.15 5.86 4.48 45.52 0.20 6.07 16 11 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 12 C -0.17 -6.04 7.68 31.12 0.24 -5.80 16 13 C 0.13 4.01 4.24 45.52 0.19 4.20 16 14 H 0.10 3.27 7.46 -2.39 -0.02 3.25 16 15 N -0.70 -17.81 5.35 -440.04 -2.36 -20.17 16 16 C 0.54 14.77 7.59 87.66 0.67 15.44 16 17 O -0.59 -21.10 15.86 -3.03 -0.05 -21.15 16 18 C -0.19 -3.69 5.24 -12.54 -0.07 -3.76 16 19 H 0.14 2.22 7.27 -2.39 -0.02 2.20 16 20 C -0.10 -1.68 5.51 -12.49 -0.07 -1.75 16 21 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 22 C -0.09 -0.99 6.01 30.38 0.18 -0.81 16 23 C -0.12 -1.25 5.69 30.65 0.17 -1.08 16 24 C -0.12 -1.22 5.93 30.65 0.18 -1.04 16 25 C -0.09 -1.23 5.83 30.46 0.18 -1.06 16 26 C -0.12 -2.27 5.82 -10.98 -0.06 -2.33 16 27 H 0.09 2.19 7.66 -2.39 -0.02 2.18 16 28 C -0.14 -4.21 7.58 31.12 0.24 -3.98 16 29 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.38 19.77 7.92 -92.71 -0.73 19.04 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.41 8.38 8.73 -92.71 -0.81 7.57 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.67 7.12 -2.39 -0.02 0.65 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.70 8.05 -2.39 -0.02 0.68 16 40 H 0.07 0.96 8.06 -2.38 -0.02 0.94 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.09 2.62 8.09 -2.39 -0.02 2.60 16 Total: -1.00 -67.96 345.50 0.99 -66.97 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.54 Total: 34.68 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 3.36 Total: -12.40 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -3.81 Total: -116.21 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.15 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -67.96 0.99 -66.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021933522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.442 kcal (2) G-P(sol) polarization free energy of solvation -67.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds