Wall clock time and date at job start Tue Mar 31 2020 00:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47473 * 270.00228 * 3 2 1 5 5 H 1.48500 * 109.47376 * 30.00491 * 3 2 1 6 6 H 1.48500 * 109.47368 * 150.00285 * 3 2 1 7 7 C 1.38811 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00413 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99632 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99534 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.85506 * 336.19544 * 10 9 7 12 12 C 1.53780 * 113.61286 * 107.50436 * 10 9 7 13 13 C 1.53783 * 87.08464 * 139.97539 * 12 10 9 14 14 H 1.09002 * 113.68832 * 89.12308 * 13 12 10 15 15 N 1.46499 * 113.61676 * 220.01825 * 13 12 10 16 16 C 1.34777 * 119.99665 * 252.77445 * 15 13 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 13 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 13 19 19 C 1.52999 * 109.47004 * 179.97438 * 18 16 15 20 20 H 1.08996 * 109.35889 * 304.72327 * 19 18 16 21 21 C 1.50076 * 109.35631 * 64.30883 * 19 18 16 22 22 C 1.29440 * 124.07231 * 137.34230 * 21 19 18 23 23 C 1.50069 * 124.08223 * 359.52671 * 22 21 19 24 24 C 1.53025 * 110.14353 * 17.13277 * 23 22 21 25 25 C 1.53027 * 109.36027 * 184.99430 * 19 18 16 26 26 C 1.53783 * 113.60878 * 204.99462 * 10 9 7 27 27 H 0.96998 * 119.99859 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99750 * 359.97438 * 9 7 2 29 29 H 1.08998 * 113.61772 * 25.42693 * 12 10 9 30 30 H 1.09001 * 113.61751 * 254.52751 * 12 10 9 31 31 H 0.97001 * 119.99790 * 72.49158 * 15 13 12 32 32 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 33 33 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 34 34 H 1.07997 * 117.96063 * 317.31525 * 21 19 18 35 35 H 1.08004 * 117.96291 * 179.50585 * 22 21 19 36 36 H 1.09003 * 109.35887 * 256.93064 * 23 22 21 37 37 H 1.09000 * 109.36333 * 137.33751 * 23 22 21 38 38 H 1.08998 * 109.64439 * 190.88275 * 24 23 22 39 39 H 1.09007 * 109.81884 * 70.35441 * 24 23 22 40 40 H 1.08994 * 109.63995 * 310.04287 * 25 19 18 41 41 H 1.08996 * 109.63594 * 70.67695 * 25 19 18 42 42 H 1.09000 * 113.60825 * 105.47645 * 26 10 9 43 43 H 1.08999 * 113.69620 * 334.58355 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 3.0655 -3.5635 -0.4080 12 6 1.9990 -4.4033 1.3404 13 6 1.8478 -5.6981 0.5245 14 1 2.7977 -6.1649 0.2638 15 7 0.8873 -6.6442 1.0977 16 6 1.3253 -7.7694 1.6965 17 8 2.5143 -8.0012 1.7563 18 6 0.3376 -8.7396 2.2916 19 6 1.0903 -9.9227 2.9035 20 1 1.7342 -10.3715 2.1472 21 6 1.9333 -9.4383 4.0468 22 6 2.0431 -10.0555 5.1792 23 6 1.3350 -11.3364 5.5111 24 6 0.8351 -12.0091 4.2308 25 6 0.0835 -10.9648 3.3956 26 6 1.2600 -4.8282 -0.5992 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3880 -0.0016 29 1 1.1208 -4.1587 1.9378 30 1 2.9271 -4.3519 1.9098 31 1 -0.0636 -6.4588 1.0499 32 1 -0.2428 -8.2381 3.0660 33 1 -0.3327 -9.1003 1.5114 34 1 2.4827 -8.5178 3.9163 35 1 2.6846 -9.6219 5.9322 36 1 0.4870 -11.1224 6.1616 37 1 2.0230 -12.0066 6.0264 38 1 0.1621 -12.8277 4.4857 39 1 1.6809 -12.3942 3.6611 40 1 -0.6744 -10.4800 4.0109 41 1 -0.3889 -11.4497 2.5414 42 1 1.5916 -5.1198 -1.5958 43 1 0.1795 -4.7009 -0.5330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022268159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:36 Heat of formation + Delta-G solvation = -11.162551 kcal Electronic energy + Delta-G solvation = -21078.148118 eV Core-core repulsion = 17930.452916 eV Total energy + Delta-G solvation = -3147.695203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14705 -38.76690 -37.64523 -34.06510 -32.98799 -32.47040 -31.15658 -29.90803 -27.52876 -25.12175 -24.48623 -22.97000 -22.41713 -21.59574 -20.27972 -19.19926 -18.09838 -17.19742 -16.89147 -16.23022 -16.03920 -15.26081 -14.66286 -14.59936 -14.35763 -14.04712 -13.60201 -13.09281 -13.03561 -12.96611 -12.85250 -12.40655 -12.27377 -12.15127 -11.91881 -11.63751 -11.26468 -11.09228 -10.93382 -10.74785 -10.63684 -10.49606 -10.35028 -10.25085 -10.04157 -9.69537 -9.48331 -9.07253 -8.91742 -8.71372 -6.99648 -5.81476 -3.10269 2.25665 2.73475 3.33370 3.41732 3.47398 3.48834 4.46855 4.50618 4.56770 4.60106 4.80839 4.95229 5.03468 5.10718 5.21988 5.24471 5.26082 5.37364 5.38083 5.46134 5.48178 5.48911 5.56608 5.68527 5.71615 5.85901 5.86638 5.95526 6.12103 6.12285 6.18307 6.24925 6.30854 6.52466 6.60882 6.64695 6.76944 6.90180 7.06732 7.67565 7.67785 8.35442 8.37288 9.48499 10.05189 10.39750 11.40998 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040072 B = 0.002660 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.566237 B =10523.789199 C =10711.745955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.079 0.921 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.108 0.892 15 N -0.716 5.716 16 C 0.510 3.490 17 O -0.544 6.544 18 C -0.136 4.136 19 C -0.042 4.042 20 H 0.087 0.913 21 C -0.133 4.133 22 C -0.173 4.173 23 C -0.089 4.089 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.159 4.159 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.399 0.601 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 -23.274 6.624 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.366 5.366 16 C 0.296 3.704 17 O -0.421 6.421 18 C -0.176 4.176 19 C -0.061 4.061 20 H 0.105 0.895 21 C -0.151 4.151 22 C -0.191 4.191 23 C -0.126 4.126 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.199 4.199 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.233 0.767 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.769 -23.242 6.651 24.187 hybrid contribution -0.337 1.172 0.071 1.221 sum -1.106 -22.071 6.722 23.098 Atomic orbital electron populations 1.69655 1.05157 1.25782 1.57555 1.24766 0.95546 0.97826 1.02780 0.86173 0.78702 0.83682 0.77547 1.21652 1.21754 1.20685 1.19320 0.91153 0.84157 1.42864 0.90991 1.42360 1.05677 0.99781 1.87020 1.21353 0.95462 0.84933 0.92668 0.90264 1.24322 1.01756 0.95287 1.00467 1.22471 0.93322 0.87503 0.95477 0.87399 1.46110 1.10426 1.21707 1.58353 1.20671 0.89864 0.81954 0.77873 1.90679 1.17312 1.75961 1.58161 1.21732 0.98285 0.96071 1.01485 1.19827 0.95689 0.93989 0.96593 0.89499 1.22220 0.98572 1.00376 0.93898 1.22009 1.01573 0.97630 0.97898 1.20425 0.99527 0.95063 0.97589 1.21589 1.00086 0.97597 0.96463 1.21679 0.97638 0.96361 0.99709 1.23858 1.01160 0.97382 0.97467 0.93449 0.78105 0.90271 0.92349 0.76697 0.88844 0.88800 0.86974 0.88232 0.91232 0.91482 0.91803 0.91727 0.91556 0.91599 0.91583 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.53 5.40 -52.64 -0.28 -17.81 16 10 C 0.17 3.29 4.48 -67.12 -0.30 2.98 16 11 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 12 C -0.18 -3.10 7.68 -25.92 -0.20 -3.30 16 13 C 0.12 1.75 4.24 -67.12 -0.28 1.47 16 14 H 0.11 1.71 7.47 -51.93 -0.39 1.32 16 15 N -0.72 -8.97 5.35 -53.01 -0.28 -9.25 16 16 C 0.51 6.59 7.46 -10.99 -0.08 6.51 16 17 O -0.54 -8.99 13.84 5.55 0.08 -8.91 16 18 C -0.14 -1.24 5.14 -27.88 -0.14 -1.38 16 19 C -0.04 -0.42 2.12 -92.06 -0.19 -0.61 16 20 H 0.09 0.96 7.96 -51.93 -0.41 0.55 16 21 C -0.13 -1.51 8.41 -35.90 -0.30 -1.82 16 22 C -0.17 -1.74 9.80 -35.90 -0.35 -2.09 16 23 C -0.09 -0.71 6.12 -28.18 -0.17 -0.88 16 24 C -0.12 -0.89 6.01 -26.51 -0.16 -1.05 16 25 C -0.12 -0.88 5.30 -26.51 -0.14 -1.02 16 26 C -0.16 -2.49 7.58 -25.92 -0.20 -2.68 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.38 9.98 7.92 -40.82 -0.32 9.66 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.40 4.07 8.73 -40.82 -0.36 3.71 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 1.55 6.47 -52.49 -0.34 1.21 16 35 H 0.10 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.51 8.13 -51.92 -0.42 0.09 16 40 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -31.50 346.78 -9.62 -41.11 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.28 Total: 10.77 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.77 Total: -11.22 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.16 Total: -54.24 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.50 -9.62 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022268159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.951 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds