Wall clock time and date at job start Tue Mar 31 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47473 * 270.00228 * 3 2 1 5 5 H 1.48500 * 109.47376 * 30.00491 * 3 2 1 6 6 H 1.48500 * 109.47368 * 150.00285 * 3 2 1 7 7 C 1.38811 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00413 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99632 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99534 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.85506 * 336.19544 * 10 9 7 12 12 C 1.53780 * 113.61286 * 107.50436 * 10 9 7 13 13 C 1.53783 * 87.08464 * 139.97539 * 12 10 9 14 14 H 1.09002 * 113.68832 * 89.12308 * 13 12 10 15 15 N 1.46499 * 113.61676 * 220.01825 * 13 12 10 16 16 C 1.34777 * 119.99665 * 252.77445 * 15 13 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 13 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 13 19 19 C 1.52999 * 109.47004 * 179.97438 * 18 16 15 20 20 H 1.08996 * 109.35889 * 304.72327 * 19 18 16 21 21 C 1.50076 * 109.35631 * 64.30883 * 19 18 16 22 22 C 1.29440 * 124.07231 * 137.34230 * 21 19 18 23 23 C 1.50069 * 124.08223 * 359.52671 * 22 21 19 24 24 C 1.53025 * 110.14353 * 17.13277 * 23 22 21 25 25 C 1.53027 * 109.36027 * 184.99430 * 19 18 16 26 26 C 1.53783 * 113.60878 * 204.99462 * 10 9 7 27 27 H 0.96998 * 119.99859 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99750 * 359.97438 * 9 7 2 29 29 H 1.08998 * 113.61772 * 25.42693 * 12 10 9 30 30 H 1.09001 * 113.61751 * 254.52751 * 12 10 9 31 31 H 0.97001 * 119.99790 * 72.49158 * 15 13 12 32 32 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 33 33 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 34 34 H 1.07997 * 117.96063 * 317.31525 * 21 19 18 35 35 H 1.08004 * 117.96291 * 179.50585 * 22 21 19 36 36 H 1.09003 * 109.35887 * 256.93064 * 23 22 21 37 37 H 1.09000 * 109.36333 * 137.33751 * 23 22 21 38 38 H 1.08998 * 109.64439 * 190.88275 * 24 23 22 39 39 H 1.09007 * 109.81884 * 70.35441 * 24 23 22 40 40 H 1.08994 * 109.63995 * 310.04287 * 25 19 18 41 41 H 1.08996 * 109.63594 * 70.67695 * 25 19 18 42 42 H 1.09000 * 113.60825 * 105.47645 * 26 10 9 43 43 H 1.08999 * 113.69620 * 334.58355 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 3.0655 -3.5635 -0.4080 12 6 1.9990 -4.4033 1.3404 13 6 1.8478 -5.6981 0.5245 14 1 2.7977 -6.1649 0.2638 15 7 0.8873 -6.6442 1.0977 16 6 1.3253 -7.7694 1.6965 17 8 2.5143 -8.0012 1.7563 18 6 0.3376 -8.7396 2.2916 19 6 1.0903 -9.9227 2.9035 20 1 1.7342 -10.3715 2.1472 21 6 1.9333 -9.4383 4.0468 22 6 2.0431 -10.0555 5.1792 23 6 1.3350 -11.3364 5.5111 24 6 0.8351 -12.0091 4.2308 25 6 0.0835 -10.9648 3.3956 26 6 1.2600 -4.8282 -0.5992 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3880 -0.0016 29 1 1.1208 -4.1587 1.9378 30 1 2.9271 -4.3519 1.9098 31 1 -0.0636 -6.4588 1.0499 32 1 -0.2428 -8.2381 3.0660 33 1 -0.3327 -9.1003 1.5114 34 1 2.4827 -8.5178 3.9163 35 1 2.6846 -9.6219 5.9322 36 1 0.4870 -11.1224 6.1616 37 1 2.0230 -12.0066 6.0264 38 1 0.1621 -12.8277 4.4857 39 1 1.6809 -12.3942 3.6611 40 1 -0.6744 -10.4800 4.0109 41 1 -0.3889 -11.4497 2.5414 42 1 1.5916 -5.1198 -1.5958 43 1 0.1795 -4.7009 -0.5330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022268159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:35 Heat of formation + Delta-G solvation = -30.693617 kcal Electronic energy + Delta-G solvation = -21078.995049 eV Core-core repulsion = 17930.452916 eV Total energy + Delta-G solvation = -3148.542133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21625 -39.83775 -38.73653 -35.76615 -34.27320 -33.47541 -31.85287 -31.79008 -28.36628 -26.55243 -26.27302 -24.18327 -23.12834 -22.69671 -21.37841 -20.63374 -19.15930 -18.81985 -17.92455 -17.51116 -16.89754 -16.40242 -16.21253 -16.01715 -15.37205 -15.08226 -14.92544 -14.60161 -14.32482 -13.82736 -13.57656 -13.46686 -13.32134 -13.19502 -13.16427 -12.97523 -12.82949 -12.37484 -12.22430 -12.18541 -12.06148 -11.75512 -11.69540 -11.50595 -11.39782 -11.01184 -10.88454 -10.57084 -9.93487 -9.85528 -8.99680 -7.96594 -5.24621 1.43171 1.47295 1.48222 1.56732 1.71432 2.30327 2.56569 3.35105 3.67854 3.74005 3.82535 3.85747 3.91202 3.97474 4.05188 4.24964 4.30356 4.32376 4.42956 4.51983 4.55681 4.72001 4.74617 4.83362 4.87299 4.88203 4.89940 4.92903 5.09525 5.12302 5.13744 5.15550 5.25117 5.40055 5.45182 5.50440 5.52763 5.69971 5.83167 6.11066 6.26101 6.66690 7.32595 7.35105 8.08045 8.31805 9.26549 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040072 B = 0.002660 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.566237 B =10523.789199 C =10711.745955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.149 3.851 11 H 0.077 0.923 12 C -0.170 4.170 13 C 0.136 3.864 14 H 0.102 0.898 15 N -0.709 5.709 16 C 0.506 3.494 17 O -0.583 6.583 18 C -0.127 4.127 19 C -0.040 4.040 20 H 0.069 0.931 21 C -0.154 4.154 22 C -0.168 4.168 23 C -0.090 4.090 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.139 4.139 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.413 0.587 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -25.058 6.821 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.039 3.961 11 H 0.095 0.905 12 C -0.213 4.213 13 C 0.030 3.970 14 H 0.120 0.880 15 N -0.360 5.360 16 C 0.295 3.705 17 O -0.464 6.464 18 C -0.167 4.167 19 C -0.059 4.059 20 H 0.087 0.913 21 C -0.172 4.172 22 C -0.186 4.186 23 C -0.126 4.126 24 C -0.158 4.158 25 C -0.148 4.148 26 C -0.178 4.178 27 H 0.060 0.940 28 H 0.208 0.792 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.250 0.750 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.636 -25.075 6.851 26.045 hybrid contribution 0.023 1.651 0.068 1.653 sum -1.613 -23.423 6.918 24.477 Atomic orbital electron populations 1.69796 1.06493 1.26107 1.59463 1.25541 0.96414 1.01024 1.03705 0.85171 0.77676 0.79637 0.77473 1.21279 1.22176 1.19705 1.19691 0.91520 0.85440 1.41121 0.90740 1.42497 1.05381 1.00753 1.87480 1.21671 0.95710 0.84228 0.94525 0.90536 1.24158 1.00956 0.96739 0.99408 1.22066 0.93732 0.86984 0.94201 0.87965 1.45996 1.10779 1.21192 1.58029 1.21399 0.90013 0.82115 0.77001 1.90670 1.19359 1.76801 1.59529 1.21774 0.97498 0.94876 1.02504 1.19816 0.95900 0.94747 0.95449 0.91260 1.22161 0.99789 0.99862 0.95371 1.22240 1.00845 0.98284 0.97227 1.20490 0.99923 0.93891 0.98332 1.21620 1.00225 0.98070 0.95917 1.21672 0.97019 0.95679 1.00479 1.23651 1.01003 0.94880 0.98277 0.93957 0.79162 0.91096 0.93254 0.75006 0.87312 0.85679 0.90247 0.88613 0.89977 0.90571 0.89815 0.92579 0.90718 0.89884 0.90053 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.64 13.06 21.65 0.28 -58.35 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 3 Si 0.97 46.12 29.55 68.60 2.03 48.14 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.25 -13.63 9.97 84.03 0.84 -12.80 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.94 5.40 -320.45 -1.73 -37.67 16 10 C 0.15 5.79 4.48 45.52 0.20 5.99 16 11 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 12 C -0.17 -6.00 7.68 31.12 0.24 -5.76 16 13 C 0.14 3.95 4.24 45.52 0.19 4.14 16 14 H 0.10 3.17 7.47 -2.39 -0.02 3.15 16 15 N -0.71 -16.66 5.35 -440.03 -2.36 -19.01 16 16 C 0.51 12.55 7.46 87.66 0.65 13.21 16 17 O -0.58 -19.46 13.84 -3.04 -0.04 -19.50 16 18 C -0.13 -2.04 5.14 29.85 0.15 -1.88 16 19 C -0.04 -0.74 2.12 -11.73 -0.02 -0.76 16 20 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 21 C -0.15 -3.50 8.41 27.04 0.23 -3.28 16 22 C -0.17 -3.28 9.80 27.04 0.27 -3.02 16 23 C -0.09 -1.23 6.12 29.66 0.18 -1.05 16 24 C -0.12 -1.48 6.01 30.74 0.18 -1.29 16 25 C -0.11 -1.36 5.30 30.74 0.16 -1.19 16 26 C -0.14 -4.15 7.58 31.12 0.24 -3.91 16 27 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.38 19.74 7.92 -92.71 -0.73 19.00 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.41 7.45 8.73 -92.71 -0.81 6.64 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.13 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.08 2.31 6.47 -2.91 -0.02 2.29 16 35 H 0.10 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 0.78 8.13 -2.38 -0.02 0.77 16 40 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 Total: -1.00 -68.97 346.78 1.61 -67.36 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -0.55 Total: 34.45 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.98 Total: -15.40 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.80 Total: -115.04 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.04 Total: -19.50 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -68.97 1.61 -67.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022268159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.665 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds