Wall clock time and date at job start Tue Mar 31 2020 00:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48504 * 109.46615 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47374 * 299.99989 * 3 2 1 6 6 H 1.48495 * 109.47187 * 60.00378 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84718 * 23.52682 * 10 9 7 12 12 C 1.53776 * 113.61435 * 154.72507 * 10 9 7 13 13 C 1.53784 * 87.08158 * 139.97955 * 12 10 9 14 14 H 1.09003 * 113.61207 * 89.11438 * 13 12 10 15 15 N 1.46497 * 113.61477 * 219.93369 * 13 12 10 16 16 C 1.34775 * 120.00002 * 204.99862 * 15 13 12 17 17 O 1.21289 * 119.99851 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00224 * 179.97438 * 16 15 13 19 19 H 1.08998 * 109.35134 * 60.27918 * 18 16 15 20 20 C 1.52874 * 109.35750 * 300.69852 * 18 16 15 21 21 C 1.53306 * 108.58005 * 185.26646 * 20 18 16 22 22 C 1.52870 * 108.59262 * 74.44070 * 21 20 18 23 23 C 1.52070 * 110.51367 * 305.11294 * 22 21 20 24 24 H 1.09000 * 114.63737 * 166.84177 * 23 22 21 25 25 C 1.52306 * 119.84327 * 310.44390 * 23 22 21 26 26 C 1.52069 * 120.02310 * 21.69838 * 23 22 21 27 27 H 1.09002 * 117.25879 * 144.43327 * 26 23 22 28 28 C 1.53776 * 87.07888 * 334.56711 * 13 12 10 29 29 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 31 31 H 1.09008 * 113.61560 * 254.52507 * 12 10 9 32 32 H 1.08997 * 113.61573 * 25.34838 * 12 10 9 33 33 H 0.96998 * 119.99937 * 24.99610 * 15 13 12 34 34 H 1.09008 * 109.61811 * 304.99042 * 20 18 16 35 35 H 1.08994 * 109.62170 * 65.53610 * 20 18 16 36 36 H 1.08999 * 109.61358 * 314.70676 * 21 20 18 37 37 H 1.09006 * 109.76007 * 194.26146 * 21 20 18 38 38 H 1.08995 * 109.26555 * 184.84561 * 22 21 20 39 39 H 1.08997 * 109.26578 * 65.37993 * 22 21 20 40 40 H 1.09007 * 117.53426 * 2.44922 * 25 23 22 41 41 H 1.08995 * 117.53835 * 217.19786 * 25 23 22 42 42 H 1.09009 * 113.61629 * 270.88287 * 28 13 12 43 43 H 1.09007 * 113.61606 * 139.97948 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 3.0675 -3.5627 0.4004 12 6 1.2629 -4.8273 0.6010 13 6 1.8461 -5.6988 -0.5238 14 1 2.7978 -6.1640 -0.2669 15 7 0.8838 -6.6472 -1.0902 16 6 1.3197 -7.7759 -1.6839 17 8 2.5087 -8.0066 -1.7489 18 6 0.3299 -8.7518 -2.2660 19 1 -0.2517 -8.2560 -3.0432 20 6 -0.6120 -9.2364 -1.1638 21 6 -1.5238 -10.3239 -1.7436 22 6 -0.7090 -11.6070 -1.9071 23 6 0.5330 -11.3465 -2.7451 24 1 1.2741 -12.1454 -2.7197 25 6 0.4100 -10.6152 -4.0754 26 6 1.0819 -9.9341 -2.8731 27 1 2.1649 -9.8222 -2.9250 28 6 1.9937 -4.4053 -1.3423 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3881 0.0039 31 1 1.5987 -5.1174 1.5967 32 1 0.1824 -4.6983 0.5396 33 1 -0.0670 -6.4628 -1.0379 34 1 -0.0295 -9.6484 -0.3396 35 1 -1.2173 -8.4032 -0.8070 36 1 -1.9024 -10.0046 -2.7145 37 1 -2.3588 -10.5044 -1.0665 38 1 -1.3223 -12.3624 -2.3982 39 1 -0.4099 -11.9708 -0.9241 40 1 -0.5793 -10.2619 -4.3667 41 1 1.0524 -10.9437 -4.8923 42 1 1.1129 -4.1615 -1.9364 43 1 2.9195 -4.3546 -1.9156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022315369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:31 Heat of formation + Delta-G solvation = -18.601396 kcal Electronic energy + Delta-G solvation = -21444.061787 eV Core-core repulsion = 18296.044012 eV Total energy + Delta-G solvation = -3148.017775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56224 -40.18489 -38.90139 -35.79703 -34.63204 -33.67822 -32.24401 -31.44768 -26.73947 -26.52860 -26.00192 -23.99832 -23.57665 -22.26623 -21.39327 -20.72950 -19.33253 -19.17070 -18.30477 -17.60115 -16.80075 -16.35592 -16.17181 -15.81768 -15.26282 -15.10964 -14.96166 -14.70510 -14.51176 -14.18116 -13.66367 -13.59362 -13.31124 -13.16593 -12.93125 -12.83372 -12.46691 -12.22802 -12.18356 -12.10774 -12.03952 -11.83556 -11.75424 -11.51374 -11.25081 -10.89549 -10.82760 -10.64402 -10.53336 -9.96682 -8.99170 -7.95982 -5.23985 1.47701 1.48132 1.58112 1.63530 2.21499 2.56732 2.84202 3.35808 3.59368 3.62695 3.71328 3.81341 3.86983 3.96537 4.01637 4.18238 4.22874 4.26769 4.30865 4.34217 4.46339 4.50971 4.64450 4.75859 4.87603 4.88418 4.89913 4.92535 5.04155 5.13819 5.14225 5.17668 5.20995 5.27835 5.34720 5.38459 5.43874 5.47442 5.51715 5.68849 6.26762 6.60961 7.27841 7.33349 8.08547 8.32402 9.27282 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041799 B = 0.002879 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.714508 B = 9722.808124 C = 9929.882963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.149 3.851 11 H 0.077 0.923 12 C -0.138 4.138 13 C 0.135 3.865 14 H 0.102 0.898 15 N -0.704 5.704 16 C 0.515 3.485 17 O -0.587 6.587 18 C -0.067 4.067 19 H 0.113 0.887 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.133 4.133 24 H 0.097 0.903 25 C -0.175 4.175 26 C -0.157 4.157 27 H 0.090 0.910 28 C -0.170 4.170 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.413 0.587 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -24.299 -4.034 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.039 3.961 11 H 0.095 0.905 12 C -0.178 4.178 13 C 0.029 3.971 14 H 0.120 0.880 15 N -0.354 5.354 16 C 0.303 3.697 17 O -0.467 6.467 18 C -0.088 4.088 19 H 0.131 0.869 20 C -0.146 4.146 21 C -0.155 4.155 22 C -0.127 4.127 23 C -0.151 4.151 24 H 0.115 0.885 25 C -0.212 4.212 26 C -0.176 4.176 27 H 0.108 0.892 28 C -0.212 4.212 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.250 0.750 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.633 -24.316 -4.065 24.920 hybrid contribution 0.020 1.368 -0.167 1.378 sum -3.613 -22.949 -4.231 23.614 Atomic orbital electron populations 1.69801 1.06472 1.26018 1.59545 1.25529 0.96406 1.00981 1.03744 0.85115 0.78243 0.80011 0.76653 1.19225 1.22154 1.21929 1.19724 0.91528 0.85407 1.40947 0.90709 1.42505 1.05401 1.00748 1.87445 1.21665 0.95738 0.84207 0.94493 0.90472 1.23657 1.01077 0.94830 0.98220 1.22106 0.93635 0.86931 0.94413 0.87982 1.45914 1.10776 1.20628 1.58083 1.21166 0.89638 0.81971 0.76907 1.90640 1.19456 1.76978 1.59620 1.20794 0.95110 0.93342 0.99516 0.86943 1.21592 0.96814 1.00042 0.96151 1.21609 0.97686 0.94142 1.02016 1.20904 0.94203 0.98219 0.99351 1.21949 1.00306 0.93666 0.99177 0.88484 1.23228 1.02467 1.04180 0.91283 1.21999 0.99018 0.93044 1.03540 0.89185 1.24161 1.01112 0.96499 0.99434 0.93975 0.79138 0.90008 0.89242 0.75021 0.92118 0.89678 0.90912 0.89713 0.90037 0.91342 0.87443 0.88707 0.90975 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.37 13.06 21.65 0.28 -58.09 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 3 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.24 -13.47 9.97 84.03 0.84 -12.63 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -35.72 5.40 -320.45 -1.73 -37.45 16 10 C 0.15 5.76 4.48 45.51 0.20 5.97 16 11 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 12 C -0.14 -4.12 7.58 31.12 0.24 -3.89 16 13 C 0.14 3.94 4.24 45.52 0.19 4.13 16 14 H 0.10 3.19 7.46 -2.39 -0.02 3.18 16 15 N -0.70 -17.04 5.25 -440.04 -2.31 -19.35 16 16 C 0.52 13.62 7.15 87.66 0.63 14.25 16 17 O -0.59 -20.67 14.92 -3.06 -0.05 -20.72 16 18 C -0.07 -1.25 2.46 -11.68 -0.03 -1.28 16 19 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16 20 C -0.11 -1.53 5.04 30.65 0.15 -1.37 16 21 C -0.12 -1.24 5.70 30.65 0.17 -1.07 16 22 C -0.09 -1.04 5.93 30.24 0.18 -0.86 16 23 C -0.13 -2.06 6.00 -11.64 -0.07 -2.13 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 C -0.17 -2.67 9.66 30.58 0.30 -2.37 16 26 C -0.16 -3.20 5.48 -10.98 -0.06 -3.26 16 27 H 0.09 2.41 6.79 -2.39 -0.02 2.40 16 28 C -0.17 -5.95 7.68 31.12 0.24 -5.71 16 29 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.38 19.62 7.92 -92.70 -0.73 18.89 16 31 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 33 H 0.41 7.78 8.21 -92.71 -0.76 7.01 16 34 H 0.06 1.01 8.04 -2.38 -0.02 0.99 16 35 H 0.08 0.96 7.68 -2.39 -0.02 0.94 16 36 H 0.07 0.70 7.11 -2.39 -0.02 0.69 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 1.35 7.26 -2.38 -0.02 1.33 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -68.11 342.40 1.18 -66.93 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.49 Total: 34.65 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 3.45 Total: -13.97 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -3.76 Total: -114.89 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -68.11 1.18 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022315369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.328 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds