Wall clock time and date at job start Tue Mar 31 2020 00:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84970 * 23.81002 * 10 9 7 12 12 C 1.53782 * 113.61423 * 155.00115 * 10 9 7 13 13 C 1.53775 * 87.08063 * 139.98212 * 12 10 9 14 14 H 1.08997 * 113.61529 * 89.12153 * 13 12 10 15 15 N 1.46509 * 113.61157 * 220.02005 * 13 12 10 16 16 C 1.34779 * 119.99557 * 205.00293 * 15 13 12 17 17 O 1.21280 * 119.99978 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99816 * 180.02562 * 16 15 13 19 19 H 1.08997 * 109.26385 * 59.49772 * 18 16 15 20 20 C 1.52876 * 109.26332 * 299.99718 * 18 16 15 21 21 C 1.53306 * 108.58726 * 184.83904 * 20 18 16 22 22 C 1.52883 * 108.57538 * 74.44587 * 21 20 18 23 23 C 1.52708 * 110.15434 * 305.47641 * 22 21 20 24 24 H 1.09002 * 115.38834 * 232.83250 * 23 22 21 25 25 C 1.53645 * 116.03198 * 90.20358 * 23 22 21 26 26 C 1.52065 * 120.52235 * 21.46920 * 23 22 21 27 27 H 1.09002 * 115.93140 * 209.99154 * 26 23 22 28 28 C 1.53777 * 87.08305 * 334.56593 * 13 12 10 29 29 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.61570 * 254.53515 * 12 10 9 32 32 H 1.09005 * 113.61104 * 25.34596 * 12 10 9 33 33 H 0.96993 * 119.99763 * 25.00149 * 15 13 12 34 34 H 1.08994 * 109.61798 * 304.57267 * 20 18 16 35 35 H 1.09002 * 109.61846 * 65.11431 * 20 18 16 36 36 H 1.08997 * 109.61758 * 194.16880 * 21 20 18 37 37 H 1.08999 * 109.62135 * 314.72004 * 21 20 18 38 38 H 1.08995 * 109.35904 * 65.69096 * 22 21 20 39 39 H 1.09001 * 109.35589 * 185.26903 * 22 21 20 40 40 H 1.09001 * 117.53900 * 355.69015 * 25 23 22 41 41 H 1.09002 * 117.54135 * 140.86133 * 25 23 22 42 42 H 1.09001 * 113.61887 * 270.88346 * 28 13 12 43 43 H 1.09001 * 113.61059 * 139.97697 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0658 -3.5640 0.4031 12 6 1.2606 -4.8290 0.5939 13 6 1.8476 -5.6973 -0.5314 14 1 2.7983 -6.1633 -0.2726 15 7 0.8866 -6.6427 -1.1051 16 6 1.3238 -7.7699 -1.7007 17 8 2.5127 -8.0013 -1.7621 18 6 0.3354 -8.7421 -2.2914 19 1 -0.2501 -8.2374 -3.0598 20 6 -0.6005 -9.2413 -1.1905 21 6 -1.5190 -10.3176 -1.7807 22 6 -0.7082 -11.6000 -1.9687 23 6 0.5363 -11.3175 -2.8074 24 1 0.6713 -11.9627 -3.6755 25 6 1.7981 -10.9165 -2.0277 26 6 1.0886 -9.9050 -2.9183 27 1 1.6006 -9.6652 -3.8502 28 6 1.9980 -4.4016 -1.3457 29 1 -0.4850 -0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 1.5928 -5.1218 1.5898 32 1 0.1802 -4.6997 0.5291 33 1 -0.0642 -6.4574 -1.0563 34 1 -0.0138 -9.6669 -0.3765 35 1 -1.2015 -8.4120 -0.8172 36 1 -2.3480 -10.5055 -1.0985 37 1 -1.9030 -9.9828 -2.7443 38 1 -0.4075 -11.9836 -0.9938 39 1 -1.3227 -12.3452 -2.4739 40 1 1.7053 -10.7907 -0.9490 41 1 2.7523 -11.3131 -2.3747 42 1 1.1193 -4.1561 -1.9421 43 1 2.9257 -4.3493 -1.9156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022315370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:35 Heat of formation + Delta-G solvation = 2.927476 kcal Electronic energy + Delta-G solvation = -21570.745388 eV Core-core repulsion = 18423.661174 eV Total energy + Delta-G solvation = -3147.084213 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68808 -39.09410 -37.64763 -34.37175 -33.59658 -32.65878 -31.26237 -29.51514 -25.67382 -25.20606 -24.19703 -23.05872 -22.48689 -21.54141 -20.33905 -19.45524 -18.56694 -17.45896 -16.97715 -16.60240 -16.01436 -15.17491 -14.88682 -14.49693 -14.07896 -13.93594 -13.73525 -13.66882 -13.59648 -13.16118 -12.81208 -12.44709 -12.16852 -12.01344 -11.63744 -11.41475 -11.16077 -11.02504 -10.85764 -10.70409 -10.58592 -10.48478 -10.32071 -10.24547 -10.00245 -9.96231 -9.46669 -9.16903 -8.92875 -8.75353 -7.07146 -6.14577 -3.14577 2.70407 3.14863 3.50754 3.55326 3.69185 3.70182 4.26558 4.42337 4.47657 4.65782 4.69284 4.83065 4.87554 4.92983 4.99396 5.13578 5.15850 5.20317 5.28258 5.34398 5.36003 5.47797 5.60456 5.67565 5.72572 5.76942 5.81412 5.83761 5.85899 5.95077 6.03936 6.04552 6.08582 6.14280 6.21751 6.44205 6.53963 6.69438 6.98416 7.63486 7.79020 8.32902 8.71390 9.17596 10.03988 10.18614 11.33672 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043921 B = 0.002936 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.357729 B = 9535.603535 C = 9846.376642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.335 4.335 8 H 0.067 0.933 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.081 0.919 12 C -0.160 4.160 13 C 0.119 3.881 14 H 0.109 0.891 15 N -0.716 5.716 16 C 0.515 3.485 17 O -0.538 6.538 18 C -0.076 4.076 19 H 0.099 0.901 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.152 4.152 24 H 0.102 0.898 25 C -0.162 4.162 26 C -0.118 4.118 27 H 0.101 0.899 28 C -0.176 4.176 29 H 0.255 0.745 30 H 0.368 0.632 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 -23.265 -3.685 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.914 3.086 4 H -0.222 1.222 5 H -0.214 1.214 6 H -0.221 1.221 7 C -0.466 4.466 8 H 0.085 0.915 9 N -0.361 5.361 10 C 0.061 3.939 11 H 0.099 0.901 12 C -0.200 4.200 13 C 0.015 3.985 14 H 0.127 0.873 15 N -0.366 5.366 16 C 0.301 3.699 17 O -0.414 6.414 18 C -0.097 4.097 19 H 0.117 0.883 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.127 4.127 23 C -0.170 4.170 24 H 0.120 0.880 25 C -0.198 4.198 26 C -0.137 4.137 27 H 0.119 0.881 28 C -0.218 4.218 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.884 -21.703 -3.712 22.098 hybrid contribution -0.505 -1.567 -0.114 1.650 sum -2.389 -23.269 -3.826 23.702 Atomic orbital electron populations 1.70861 1.06065 1.28403 1.53555 1.25809 0.97045 1.01111 1.00263 0.83193 0.73927 0.75237 0.76281 1.22249 1.21364 1.22082 1.20147 0.92179 0.85808 1.48482 0.91531 1.42368 1.04695 1.00792 1.88290 1.21293 0.95449 0.84416 0.92702 0.90133 1.23868 1.00987 0.97519 0.97634 1.22436 0.93354 0.87485 0.95268 0.87332 1.46074 1.10301 1.21556 1.58636 1.20588 0.89664 0.81674 0.77981 1.90680 1.17169 1.75846 1.57736 1.20656 0.95866 0.94598 0.98587 0.88264 1.21617 0.97166 0.99196 0.97179 1.21573 0.97562 0.94995 1.01358 1.21053 0.94845 0.97448 0.99367 1.22307 0.95520 0.97668 1.01518 0.88028 1.22968 0.95740 1.02937 0.98201 1.21361 1.02069 0.89008 1.01267 0.88091 1.24310 1.01771 0.95319 1.00416 0.93416 0.79861 0.91496 0.90204 0.76809 0.91219 0.91024 0.91411 0.91336 0.91654 0.91551 0.89006 0.89024 0.90422 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.99 13.70 55.49 0.76 -28.23 16 2 C -0.04 -1.30 5.50 -17.43 -0.10 -1.39 16 3 Si 1.08 25.94 29.92 -169.99 -5.09 20.86 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.34 -9.41 9.97 -15.06 -0.15 -9.56 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.90 5.40 -52.64 -0.28 -18.18 16 10 C 0.17 3.45 4.48 -67.12 -0.30 3.15 16 11 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 12 C -0.16 -2.53 7.58 -25.92 -0.20 -2.72 16 13 C 0.12 1.81 4.24 -67.12 -0.28 1.53 16 14 H 0.11 1.75 7.47 -51.93 -0.39 1.36 16 15 N -0.72 -9.15 5.25 -53.02 -0.28 -9.43 16 16 C 0.52 6.92 7.10 -10.98 -0.08 6.85 16 17 O -0.54 -9.26 15.25 5.56 0.08 -9.18 16 18 C -0.08 -0.75 2.58 -92.31 -0.24 -0.99 16 19 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.11 -0.93 4.82 -26.64 -0.13 -1.05 16 21 C -0.12 -0.80 5.93 -26.63 -0.16 -0.96 16 22 C -0.09 -0.63 5.83 -26.94 -0.16 -0.79 16 23 C -0.15 -1.26 6.19 -90.91 -0.56 -1.83 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 25 C -0.16 -1.64 9.16 -26.75 -0.25 -1.88 16 26 C -0.12 -1.21 4.69 -91.93 -0.43 -1.64 16 27 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 28 C -0.18 -3.14 7.68 -25.92 -0.20 -3.34 16 29 H 0.25 7.66 6.77 -40.82 -0.28 7.38 16 30 H 0.37 9.29 6.76 -40.82 -0.28 9.02 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.40 4.18 8.23 -40.82 -0.34 3.85 16 34 H 0.07 0.63 7.11 -51.93 -0.37 0.26 16 35 H 0.07 0.51 7.70 -51.93 -0.40 0.11 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 38 H 0.06 0.46 8.06 -51.93 -0.42 0.04 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.98 7.26 -51.93 -0.38 0.60 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -32.68 341.29 -10.00 -42.67 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.11 Total: 10.99 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -3.22 Total: -14.64 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.20 Total: -55.84 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.09 Total: 20.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.68 -10.00 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022315370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.602 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds