Wall clock time and date at job start Tue Mar 31 2020 00:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84970 * 23.81002 * 10 9 7 12 12 C 1.53782 * 113.61423 * 155.00115 * 10 9 7 13 13 C 1.53775 * 87.08063 * 139.98212 * 12 10 9 14 14 H 1.08997 * 113.61529 * 89.12153 * 13 12 10 15 15 N 1.46509 * 113.61157 * 220.02005 * 13 12 10 16 16 C 1.34779 * 119.99557 * 205.00293 * 15 13 12 17 17 O 1.21280 * 119.99978 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99816 * 180.02562 * 16 15 13 19 19 H 1.08997 * 109.26385 * 59.49772 * 18 16 15 20 20 C 1.52876 * 109.26332 * 299.99718 * 18 16 15 21 21 C 1.53306 * 108.58726 * 184.83904 * 20 18 16 22 22 C 1.52883 * 108.57538 * 74.44587 * 21 20 18 23 23 C 1.52708 * 110.15434 * 305.47641 * 22 21 20 24 24 H 1.09002 * 115.38834 * 232.83250 * 23 22 21 25 25 C 1.53645 * 116.03198 * 90.20358 * 23 22 21 26 26 C 1.52065 * 120.52235 * 21.46920 * 23 22 21 27 27 H 1.09002 * 115.93140 * 209.99154 * 26 23 22 28 28 C 1.53777 * 87.08305 * 334.56593 * 13 12 10 29 29 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.61570 * 254.53515 * 12 10 9 32 32 H 1.09005 * 113.61104 * 25.34596 * 12 10 9 33 33 H 0.96993 * 119.99763 * 25.00149 * 15 13 12 34 34 H 1.08994 * 109.61798 * 304.57267 * 20 18 16 35 35 H 1.09002 * 109.61846 * 65.11431 * 20 18 16 36 36 H 1.08997 * 109.61758 * 194.16880 * 21 20 18 37 37 H 1.08999 * 109.62135 * 314.72004 * 21 20 18 38 38 H 1.08995 * 109.35904 * 65.69096 * 22 21 20 39 39 H 1.09001 * 109.35589 * 185.26903 * 22 21 20 40 40 H 1.09001 * 117.53900 * 355.69015 * 25 23 22 41 41 H 1.09002 * 117.54135 * 140.86133 * 25 23 22 42 42 H 1.09001 * 113.61887 * 270.88346 * 28 13 12 43 43 H 1.09001 * 113.61059 * 139.97697 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0658 -3.5640 0.4031 12 6 1.2606 -4.8290 0.5939 13 6 1.8476 -5.6973 -0.5314 14 1 2.7983 -6.1633 -0.2726 15 7 0.8866 -6.6427 -1.1051 16 6 1.3238 -7.7699 -1.7007 17 8 2.5127 -8.0013 -1.7621 18 6 0.3354 -8.7421 -2.2914 19 1 -0.2501 -8.2374 -3.0598 20 6 -0.6005 -9.2413 -1.1905 21 6 -1.5190 -10.3176 -1.7807 22 6 -0.7082 -11.6000 -1.9687 23 6 0.5363 -11.3175 -2.8074 24 1 0.6713 -11.9627 -3.6755 25 6 1.7981 -10.9165 -2.0277 26 6 1.0886 -9.9050 -2.9183 27 1 1.6006 -9.6652 -3.8502 28 6 1.9980 -4.4016 -1.3457 29 1 -0.4850 -0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 1.5928 -5.1218 1.5898 32 1 0.1802 -4.6997 0.5291 33 1 -0.0642 -6.4574 -1.0563 34 1 -0.0138 -9.6669 -0.3765 35 1 -1.2015 -8.4120 -0.8172 36 1 -2.3480 -10.5055 -1.0985 37 1 -1.9030 -9.9828 -2.7443 38 1 -0.4075 -11.9836 -0.9938 39 1 -1.3227 -12.3452 -2.4739 40 1 1.7053 -10.7907 -0.9490 41 1 2.7523 -11.3131 -2.3747 42 1 1.1193 -4.1561 -1.9421 43 1 2.9257 -4.3493 -1.9156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022315370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:34 Heat of formation + Delta-G solvation = -17.394821 kcal Electronic energy + Delta-G solvation = -21571.626629 eV Core-core repulsion = 18423.661174 eV Total energy + Delta-G solvation = -3147.965454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.64406 -40.25730 -38.86168 -36.11756 -34.72156 -33.69764 -32.20235 -31.28425 -26.64811 -26.58400 -25.90816 -24.33911 -23.36150 -22.53754 -21.40734 -20.80623 -19.54294 -19.29236 -17.97631 -17.62640 -17.16510 -16.70362 -16.02067 -15.76957 -15.63401 -15.27294 -14.80650 -14.66461 -14.60208 -14.26109 -13.75844 -13.66758 -13.41984 -13.08293 -12.88244 -12.67334 -12.34995 -12.18852 -12.15534 -12.05765 -11.87804 -11.84546 -11.79107 -11.31919 -11.19813 -11.08670 -10.89097 -10.66510 -10.44419 -10.00799 -9.11210 -8.40839 -5.34705 1.58350 1.63145 1.68539 1.82806 2.12989 2.70486 2.89626 3.36053 3.53925 3.58311 3.68021 3.75096 3.79180 3.83381 4.00590 4.02434 4.11594 4.19979 4.22811 4.26581 4.50872 4.53613 4.62184 4.69555 4.74847 4.76510 4.79250 4.88778 5.04205 5.04344 5.06492 5.08751 5.17193 5.28485 5.29475 5.31988 5.35791 5.48746 5.57057 5.62836 6.49157 6.58456 7.07773 7.26953 7.98181 8.09161 9.11258 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043921 B = 0.002936 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.357729 B = 9535.603535 C = 9846.376642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.103 4.103 3 Si 1.128 2.872 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.336 4.336 8 H 0.065 0.935 9 N -0.735 5.735 10 C 0.153 3.847 11 H 0.074 0.926 12 C -0.139 4.139 13 C 0.139 3.861 14 H 0.103 0.897 15 N -0.707 5.707 16 C 0.513 3.487 17 O -0.579 6.579 18 C -0.068 4.068 19 H 0.116 0.884 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.092 4.092 23 C -0.128 4.128 24 H 0.113 0.887 25 C -0.177 4.177 26 C -0.135 4.135 27 H 0.089 0.911 28 C -0.170 4.170 29 H 0.246 0.754 30 H 0.363 0.637 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.412 0.588 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 -24.587 -3.717 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.294 4.294 3 Si 0.953 3.047 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.375 5.375 10 C 0.043 3.957 11 H 0.092 0.908 12 C -0.178 4.178 13 C 0.033 3.967 14 H 0.121 0.879 15 N -0.357 5.357 16 C 0.301 3.699 17 O -0.458 6.458 18 C -0.089 4.089 19 H 0.134 0.866 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.129 4.129 23 C -0.147 4.147 24 H 0.131 0.869 25 C -0.214 4.214 26 C -0.153 4.153 27 H 0.107 0.893 28 C -0.212 4.212 29 H 0.056 0.944 30 H 0.196 0.804 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.801 -23.086 -3.742 23.555 hybrid contribution -0.155 -1.245 -0.127 1.261 sum -2.956 -24.331 -3.869 24.813 Atomic orbital electron populations 1.70963 1.07078 1.28002 1.56201 1.27166 0.97165 1.04591 1.00518 0.82604 0.73494 0.71650 0.76906 1.21005 1.21896 1.20121 1.20466 0.92384 0.87198 1.46671 0.91690 1.42502 1.04600 1.01589 1.88840 1.21604 0.95587 0.83848 0.94659 0.90770 1.23660 1.00959 0.94845 0.98377 1.22039 0.93716 0.86927 0.94056 0.87949 1.45942 1.10666 1.20950 1.58178 1.21271 0.89743 0.81816 0.77109 1.90665 1.19185 1.76705 1.59263 1.20676 0.95221 0.93634 0.99391 0.86627 1.21641 0.96953 1.00157 0.96168 1.21576 0.97481 0.94103 1.01951 1.21122 0.94349 0.98146 0.99279 1.22413 0.95047 0.95932 1.01264 0.86919 1.22955 0.96678 1.03959 0.97828 1.21413 1.02959 0.90118 1.00842 0.89266 1.24149 1.01046 0.96670 0.99320 0.94383 0.80434 0.90013 0.89242 0.75131 0.92296 0.89685 0.89918 0.90701 0.91664 0.89856 0.89838 0.89598 0.91047 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.49 13.70 21.65 0.30 -60.19 16 2 C -0.10 -5.98 5.50 84.86 0.47 -5.51 16 3 Si 1.13 52.13 29.92 68.60 2.05 54.18 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.34 -18.92 9.97 84.03 0.84 -18.08 16 8 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 9 N -0.74 -36.63 5.40 -320.45 -1.73 -38.36 16 10 C 0.15 6.03 4.48 45.52 0.20 6.24 16 11 H 0.07 2.99 8.10 -2.39 -0.02 2.97 16 12 C -0.14 -4.17 7.58 31.12 0.24 -3.93 16 13 C 0.14 4.05 4.24 45.51 0.19 4.25 16 14 H 0.10 3.22 7.47 -2.39 -0.02 3.20 16 15 N -0.71 -16.94 5.25 -440.03 -2.31 -19.25 16 16 C 0.51 13.27 7.10 87.66 0.62 13.89 16 17 O -0.58 -19.93 15.25 -3.03 -0.05 -19.98 16 18 C -0.07 -1.24 2.58 -11.89 -0.03 -1.27 16 19 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 20 C -0.11 -1.54 4.82 30.66 0.15 -1.39 16 21 C -0.11 -1.18 5.93 30.66 0.18 -1.00 16 22 C -0.09 -1.03 5.83 30.46 0.18 -0.85 16 23 C -0.13 -1.90 6.19 -10.98 -0.07 -1.97 16 24 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 25 C -0.18 -3.53 9.16 30.58 0.28 -3.25 16 26 C -0.13 -2.63 4.69 -11.64 -0.05 -2.69 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 C -0.17 -6.01 7.68 31.12 0.24 -5.77 16 29 H 0.25 15.05 6.77 -92.71 -0.63 14.42 16 30 H 0.36 18.53 6.76 -92.71 -0.63 17.90 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.09 2.56 8.10 -2.38 -0.02 2.54 16 33 H 0.41 7.67 8.23 -92.71 -0.76 6.91 16 34 H 0.06 0.96 7.11 -2.39 -0.02 0.94 16 35 H 0.08 0.95 7.70 -2.39 -0.02 0.93 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.72 8.04 -2.39 -0.02 0.70 16 38 H 0.06 0.76 8.06 -2.39 -0.02 0.74 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.08 1.78 7.26 -2.39 -0.02 1.76 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -70.75 341.29 1.45 -69.29 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.24 Total: 35.65 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 3.43 Total: -21.34 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -3.75 Total: -117.80 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.05 Total: -19.98 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -70.75 1.45 -69.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022315370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.900 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds