Wall clock time and date at job start Tue Mar 31 2020 00:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00141 * 2 1 4 4 H 1.48496 * 109.46858 * 269.99990 * 3 2 1 5 5 H 1.48494 * 109.46810 * 30.00162 * 3 2 1 6 6 H 1.48495 * 109.46917 * 150.00067 * 3 2 1 7 7 C 1.38816 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00125 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99945 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00104 * 179.97438 * 9 7 2 11 11 H 1.08995 * 112.85138 * 336.19908 * 10 9 7 12 12 C 1.53959 * 113.66585 * 107.43793 * 10 9 7 13 13 C 1.53775 * 87.01792 * 139.93427 * 12 10 9 14 14 H 1.08992 * 113.61256 * 89.23333 * 13 12 10 15 15 N 1.46501 * 113.60986 * 220.04909 * 13 12 10 16 16 C 1.34785 * 119.99901 * 254.13259 * 15 13 12 17 17 O 1.21287 * 119.99826 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99875 * 180.02562 * 16 15 13 19 19 C 1.53007 * 109.46875 * 180.02562 * 18 16 15 20 20 H 1.08991 * 109.64023 * 305.42537 * 19 18 16 21 21 C 1.53022 * 109.63711 * 66.06062 * 19 18 16 22 22 C 1.50065 * 110.19829 * 168.92850 * 21 19 18 23 23 C 1.29443 * 124.07980 * 343.32387 * 22 21 19 24 24 C 1.50070 * 124.07366 * 359.94620 * 23 22 21 25 25 C 1.53027 * 110.14693 * 343.13269 * 24 23 22 26 26 C 1.53776 * 113.61472 * 204.99527 * 10 9 7 27 27 H 0.97002 * 120.00042 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00255 * 359.97438 * 9 7 2 29 29 H 1.09007 * 113.61227 * 25.41116 * 12 10 9 30 30 H 1.08996 * 113.66570 * 254.46783 * 12 10 9 31 31 H 0.96999 * 120.00327 * 74.14462 * 15 13 12 32 32 H 1.09004 * 109.47106 * 60.01054 * 18 16 15 33 33 H 1.08998 * 109.47429 * 300.00610 * 18 16 15 34 34 H 1.09002 * 109.36071 * 289.32666 * 21 19 18 35 35 H 1.08994 * 109.36386 * 49.04915 * 21 19 18 36 36 H 1.08004 * 117.96441 * 163.07979 * 22 21 19 37 37 H 1.08002 * 117.96781 * 180.23731 * 23 22 21 38 38 H 1.09000 * 109.35664 * 103.33988 * 24 23 22 39 39 H 1.09003 * 109.36112 * 222.92697 * 24 23 22 40 40 H 1.08997 * 109.64512 * 169.11725 * 25 24 23 41 41 H 1.09001 * 109.64307 * 289.75441 * 25 24 23 42 42 H 1.09003 * 113.61082 * 105.47621 * 26 10 9 43 43 H 1.08998 * 113.62033 * 334.56956 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 1 3.5277 -3.2971 0.4049 12 6 4.7876 -2.7946 -1.3451 13 6 5.9847 -3.3093 -0.5286 14 1 5.9141 -4.3654 -0.2687 15 7 7.2840 -2.9501 -1.1021 16 6 8.0281 -3.8862 -1.7240 17 8 7.6217 -5.0258 -1.8092 18 6 9.3649 -3.5169 -2.3135 19 6 9.9978 -4.7528 -2.9563 20 1 10.0481 -5.5604 -2.2261 21 6 9.1605 -5.1924 -4.1593 22 6 9.9015 -6.2256 -4.9565 23 6 11.1724 -6.4481 -4.8523 24 6 12.0827 -5.7031 -3.9203 25 6 11.4107 -4.4123 -3.4470 26 6 5.5258 -2.3660 0.5959 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 0.0004 29 1 5.0142 -1.9120 -1.9434 30 1 4.2795 -3.5734 -1.9137 31 1 7.6090 -2.0387 -1.0342 32 1 10.0183 -3.1420 -1.5256 33 1 9.2276 -2.7443 -3.0699 34 1 8.2170 -5.6112 -3.8092 35 1 8.9593 -4.3297 -4.7943 36 1 9.3387 -6.8233 -5.6583 37 1 11.6054 -7.2144 -5.4781 38 1 12.3085 -6.3302 -3.0579 39 1 13.0096 -5.4586 -4.4393 40 1 11.9871 -3.9772 -2.6306 41 1 11.3508 -3.7056 -4.2747 42 1 5.6129 -2.7997 1.5922 43 1 5.9547 -1.3662 0.5294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022549439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:15 Heat of formation + Delta-G solvation = -28.341822 kcal Electronic energy + Delta-G solvation = -21166.109348 eV Core-core repulsion = 18017.669197 eV Total energy + Delta-G solvation = -3148.440152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21688 -39.87419 -38.73494 -35.84038 -34.28571 -33.61350 -32.38442 -31.58321 -28.46538 -26.55881 -26.19857 -24.23513 -23.56785 -22.15791 -21.34943 -20.83618 -19.44324 -18.85567 -17.83229 -17.57122 -16.84403 -16.41548 -16.23062 -15.90548 -15.59899 -15.07137 -14.84336 -14.70515 -14.30751 -13.91164 -13.78192 -13.59512 -13.47060 -13.32090 -13.17414 -12.94037 -12.87829 -12.41792 -12.33531 -12.01592 -11.88639 -11.80920 -11.66071 -11.57595 -11.46767 -10.99485 -10.91788 -10.57468 -9.94515 -9.81394 -9.28171 -8.02503 -5.36633 1.37959 1.43198 1.43337 1.50497 1.73697 2.30687 2.49183 3.27081 3.62844 3.68271 3.74566 3.82060 3.84133 3.90976 4.08152 4.17902 4.25791 4.30887 4.44727 4.50709 4.61073 4.72133 4.77351 4.80777 4.84864 4.85514 4.89350 4.97756 5.06919 5.10889 5.13716 5.15477 5.25674 5.36820 5.41029 5.53851 5.69108 5.77158 5.80772 6.10757 6.22059 6.68866 7.07429 7.38586 7.82992 8.03647 9.19105 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038386 B = 0.002808 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.251135 B = 9968.360998 C =10075.697221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.237 4.237 8 H 0.053 0.947 9 N -0.737 5.737 10 C 0.151 3.849 11 H 0.072 0.928 12 C -0.172 4.172 13 C 0.136 3.864 14 H 0.099 0.901 15 N -0.708 5.708 16 C 0.505 3.495 17 O -0.583 6.583 18 C -0.130 4.130 19 C -0.069 4.069 20 H 0.059 0.941 21 C -0.092 4.092 22 C -0.169 4.169 23 C -0.162 4.162 24 C -0.093 4.093 25 C -0.111 4.111 26 C -0.138 4.138 27 H 0.258 0.742 28 H 0.369 0.631 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.415 0.585 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.665 -6.242 -6.151 30.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.260 4.260 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.368 4.368 8 H 0.071 0.929 9 N -0.378 5.378 10 C 0.041 3.959 11 H 0.090 0.910 12 C -0.213 4.213 13 C 0.030 3.970 14 H 0.117 0.883 15 N -0.360 5.360 16 C 0.294 3.706 17 O -0.463 6.463 18 C -0.169 4.169 19 C -0.088 4.088 20 H 0.078 0.922 21 C -0.129 4.129 22 C -0.187 4.187 23 C -0.180 4.180 24 C -0.130 4.130 25 C -0.148 4.148 26 C -0.177 4.177 27 H 0.066 0.934 28 H 0.203 0.797 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.252 0.748 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 29.158 -7.128 -6.192 30.648 hybrid contribution -0.627 1.011 -0.198 1.206 sum 28.531 -6.117 -6.390 29.871 Atomic orbital electron populations 1.69904 1.07362 1.26773 1.59590 1.25613 0.96204 1.01648 1.02526 0.85324 0.78829 0.79022 0.78072 1.20501 1.22461 1.16826 1.19098 0.82896 0.93413 1.41417 0.92888 1.42627 1.02298 1.03707 1.89217 1.21667 0.91002 0.88245 0.94958 0.90951 1.24194 0.97389 1.00591 0.99175 1.22027 0.81627 0.99219 0.94165 0.88272 1.45956 1.19195 1.13508 1.57291 1.21431 0.87383 0.84693 0.77101 1.90669 1.73951 1.22105 1.59580 1.21828 0.92294 1.00163 1.02641 1.20909 0.95232 0.96393 0.96233 0.92229 1.20569 0.98677 0.97787 0.95862 1.22165 0.96227 0.99773 1.00507 1.22263 0.95074 1.00587 1.00117 1.20511 0.98036 0.96128 0.98327 1.21674 0.94082 0.97433 1.01633 1.23675 0.95269 1.00301 0.98463 0.93351 0.79692 0.90127 0.93447 0.74820 0.85896 0.86862 0.92219 0.91064 0.88532 0.87358 0.90763 0.89506 0.89604 0.91078 0.89749 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.47 13.97 21.65 0.30 -63.17 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 44.39 27.74 68.60 1.90 46.29 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.24 -9.82 6.52 99.48 0.65 -9.17 16 7 C -0.24 -13.48 10.45 84.03 0.88 -12.60 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 9 N -0.74 -33.24 5.21 -320.17 -1.67 -34.91 16 10 C 0.15 5.49 4.48 45.58 0.20 5.70 16 11 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 12 C -0.17 -5.56 7.69 31.18 0.24 -5.32 16 13 C 0.14 3.55 4.21 45.51 0.19 3.75 16 14 H 0.10 2.89 7.50 -2.39 -0.02 2.87 16 15 N -0.71 -14.31 5.36 -440.04 -2.36 -16.67 16 16 C 0.51 11.24 7.59 87.65 0.67 11.91 16 17 O -0.58 -18.34 13.72 -3.05 -0.04 -18.38 16 18 C -0.13 -1.74 5.17 29.85 0.15 -1.59 16 19 C -0.07 -1.13 1.87 -10.65 -0.02 -1.15 16 20 H 0.06 1.24 7.93 -2.39 -0.02 1.22 16 21 C -0.09 -1.88 5.05 29.66 0.15 -1.73 16 22 C -0.17 -3.21 9.80 27.04 0.27 -2.95 16 23 C -0.16 -2.55 9.80 27.04 0.27 -2.29 16 24 C -0.09 -1.12 6.12 29.66 0.18 -0.93 16 25 C -0.11 -1.24 5.31 30.74 0.16 -1.07 16 26 C -0.14 -3.58 7.58 31.12 0.24 -3.35 16 27 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.37 15.49 5.79 -92.70 -0.54 14.95 16 29 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.41 5.73 8.71 -92.71 -0.81 4.92 16 32 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.11 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.06 1.61 6.31 -2.39 -0.02 1.59 16 35 H 0.07 1.33 8.06 -2.39 -0.02 1.31 16 36 H 0.10 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.11 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.10 2.26 8.09 -2.39 -0.02 2.24 16 Total: -1.00 -73.56 343.54 1.77 -71.79 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.41 Total: 30.25 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.04 Total: -15.20 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -3.72 Total: -114.75 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.04 Total: -18.38 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Total: -73.56 1.77 -71.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022549439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.449 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds