Wall clock time and date at job start Tue Mar 31 2020 00:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48500 * 109.46923 * 269.99393 * 3 2 1 5 5 H 1.48491 * 109.47254 * 30.00080 * 3 2 1 6 6 H 1.48503 * 109.47073 * 150.00070 * 3 2 1 7 7 C 1.38810 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00683 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99699 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85420 * 23.80164 * 10 9 7 12 12 C 1.53781 * 113.61405 * 154.99879 * 10 9 7 13 13 C 1.53786 * 87.17350 * 140.02258 * 12 10 9 14 14 H 1.08993 * 113.61491 * 89.15923 * 13 12 10 15 15 N 1.46501 * 113.61366 * 220.06429 * 13 12 10 16 16 C 1.34773 * 120.00122 * 204.99908 * 15 13 12 17 17 O 1.21289 * 119.99571 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00316 * 179.97438 * 16 15 13 19 19 C 1.53003 * 109.47285 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.63686 * 54.58678 * 19 18 16 21 21 C 1.53022 * 109.64501 * 293.94762 * 19 18 16 22 22 C 1.50065 * 110.14464 * 190.87698 * 21 19 18 23 23 C 1.29438 * 124.07915 * 17.13371 * 22 21 19 24 24 C 1.50067 * 124.07746 * 359.52885 * 23 22 21 25 25 C 1.53030 * 110.14536 * 17.12797 * 24 23 22 26 26 C 1.53782 * 113.68817 * 252.53446 * 10 9 7 27 27 H 0.97002 * 120.00266 * 0.02562 * 1 2 3 28 28 H 0.96990 * 120.00418 * 359.97438 * 9 7 2 29 29 H 1.09002 * 113.61445 * 254.61257 * 12 10 9 30 30 H 1.09002 * 113.61408 * 25.42988 * 12 10 9 31 31 H 0.97002 * 119.99797 * 24.99368 * 15 13 12 32 32 H 1.09002 * 109.47503 * 300.00170 * 18 16 15 33 33 H 1.09005 * 109.47302 * 60.00162 * 18 16 15 34 34 H 1.09001 * 109.35431 * 311.08711 * 21 19 18 35 35 H 1.08997 * 109.35488 * 70.66733 * 21 19 18 36 36 H 1.08004 * 117.95708 * 197.10578 * 22 21 19 37 37 H 1.07999 * 117.96273 * 179.50450 * 23 22 21 38 38 H 1.09001 * 109.35987 * 256.92909 * 24 23 22 39 39 H 1.08994 * 109.24962 * 137.27170 * 24 23 22 40 40 H 1.08998 * 109.64114 * 190.88132 * 25 24 23 41 41 H 1.09005 * 109.80832 * 70.35371 * 25 24 23 42 42 H 1.08997 * 113.61668 * 334.55345 * 26 10 9 43 43 H 1.08998 * 113.61674 * 105.37854 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0656 -3.5639 0.4059 12 6 1.2601 -4.8288 0.5961 13 6 1.8476 -5.6998 -0.5270 14 1 2.7974 -6.1665 -0.2661 15 7 0.8863 -6.6451 -1.1003 16 6 1.3229 -7.7738 -1.6933 17 8 2.5117 -8.0068 -1.7528 18 6 0.3341 -8.7464 -2.2826 19 6 1.0855 -9.9327 -2.8898 20 1 1.7410 -10.3742 -2.1392 21 6 1.9126 -9.4595 -4.0871 22 6 2.4406 -10.6394 -4.8493 23 6 1.9784 -11.8429 -4.7344 24 6 0.8565 -12.2286 -3.8153 25 6 0.0809 -10.9836 -3.3791 26 6 2.0009 -4.4032 -1.3428 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 1.5908 -5.1202 1.5930 30 1 0.1798 -4.7002 0.5292 31 1 -0.0644 -6.4585 -1.0530 32 1 -0.3360 -9.1024 -1.5000 33 1 -0.2466 -8.2485 -3.0592 34 1 1.2854 -8.8564 -4.7437 35 1 2.7476 -8.8549 -3.7331 36 1 3.2568 -10.4739 -5.5370 37 1 2.4278 -12.6178 -5.3377 38 1 1.2649 -12.7263 -2.9357 39 1 0.1835 -12.9097 -4.3359 40 1 -0.6021 -11.2423 -2.5700 41 1 -0.4838 -10.5860 -4.2224 42 1 1.1232 -4.1590 -1.9410 43 1 2.9291 -4.3499 -1.9117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022549441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:18 Heat of formation + Delta-G solvation = -11.905013 kcal Electronic energy + Delta-G solvation = -21093.329440 eV Core-core repulsion = 17945.602042 eV Total energy + Delta-G solvation = -3147.727398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14562 -38.75542 -37.62464 -34.06437 -33.05038 -32.52275 -30.91858 -29.91387 -27.55238 -25.11657 -24.46594 -23.43593 -22.44601 -21.18201 -20.24074 -19.18659 -18.14508 -17.19042 -16.80748 -16.30160 -15.95215 -15.22294 -14.70618 -14.62229 -14.33726 -14.10422 -13.55887 -13.21982 -13.04579 -12.88117 -12.75015 -12.51340 -12.28566 -12.09169 -11.91549 -11.69765 -11.26486 -10.93765 -10.88345 -10.75039 -10.62719 -10.50391 -10.32616 -10.28707 -10.05286 -9.69791 -9.48944 -9.10326 -8.91592 -8.70774 -6.99715 -5.81488 -3.10290 2.15852 2.73422 3.32827 3.41806 3.47387 3.48697 4.44539 4.49957 4.57000 4.62638 4.87304 4.96050 5.05271 5.13378 5.18024 5.23639 5.29907 5.36936 5.42634 5.46308 5.49111 5.54550 5.62413 5.65402 5.77782 5.86230 5.94989 5.99444 6.10085 6.16824 6.25059 6.25170 6.30954 6.50954 6.53642 6.61049 6.76593 6.83623 7.06714 7.67719 7.67853 8.35952 8.37284 9.48461 10.05172 10.39766 11.40955 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043789 B = 0.002627 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.278047 B =10656.286942 C =10820.566512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.168 3.832 11 H 0.079 0.921 12 C -0.159 4.159 13 C 0.117 3.883 14 H 0.108 0.892 15 N -0.716 5.716 16 C 0.510 3.490 17 O -0.543 6.543 18 C -0.139 4.139 19 C -0.069 4.069 20 H 0.080 0.920 21 C -0.094 4.094 22 C -0.143 4.143 23 C -0.170 4.170 24 C -0.088 4.088 25 C -0.117 4.117 26 C -0.176 4.176 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 -23.163 -6.158 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.199 4.199 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.366 5.366 16 C 0.297 3.703 17 O -0.421 6.421 18 C -0.179 4.179 19 C -0.088 4.088 20 H 0.099 0.901 21 C -0.131 4.131 22 C -0.161 4.161 23 C -0.188 4.188 24 C -0.125 4.125 25 C -0.154 4.154 26 C -0.218 4.218 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.426 -23.137 -6.171 23.950 hybrid contribution -0.363 1.031 -0.154 1.104 sum -0.788 -22.106 -6.325 23.007 Atomic orbital electron populations 1.69655 1.05155 1.25780 1.57557 1.24766 0.95544 0.97824 1.02783 0.86173 0.78687 0.83687 0.77557 1.21671 1.21755 1.20676 1.19319 0.91153 0.84155 1.42862 0.90989 1.42355 1.05674 0.99779 1.87019 1.21350 0.95461 0.84932 0.92688 0.90281 1.23856 1.01161 0.97380 0.97480 1.22490 0.93301 0.87527 0.95461 0.87394 1.46102 1.10425 1.21502 1.58555 1.20680 0.89873 0.81927 0.77868 1.90657 1.17378 1.76054 1.58023 1.21793 0.98295 0.96201 1.01641 1.20939 0.96422 0.93907 0.97569 0.90147 1.20644 1.00662 0.96372 0.95378 1.22121 0.99512 0.94885 0.99598 1.21990 0.99130 0.97055 1.00608 1.20406 0.95930 0.97663 0.98507 1.21687 0.97469 0.95330 1.00941 1.24350 1.01747 0.95251 1.00456 0.93451 0.78112 0.91595 0.90028 0.76704 0.88944 0.88938 0.91370 0.88973 0.88227 0.88363 0.91052 0.91309 0.91638 0.91678 0.90306 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 9 N -0.71 -17.48 5.40 -52.63 -0.28 -17.76 16 10 C 0.17 3.27 4.48 -67.11 -0.30 2.97 16 11 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 12 C -0.16 -2.48 7.58 -25.92 -0.20 -2.68 16 13 C 0.12 1.74 4.25 -67.02 -0.28 1.45 16 14 H 0.11 1.70 7.47 -51.93 -0.39 1.31 16 15 N -0.72 -8.88 5.36 -52.93 -0.28 -9.16 16 16 C 0.51 6.49 7.59 -10.99 -0.08 6.41 16 17 O -0.54 -8.86 13.70 5.55 0.08 -8.79 16 18 C -0.14 -1.24 5.17 -27.89 -0.14 -1.39 16 19 C -0.07 -0.66 1.87 -90.40 -0.17 -0.83 16 20 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 21 C -0.09 -1.00 5.06 -28.18 -0.14 -1.14 16 22 C -0.14 -1.41 9.80 -35.90 -0.35 -1.77 16 23 C -0.17 -1.50 9.80 -35.90 -0.35 -1.85 16 24 C -0.09 -0.67 6.12 -28.17 -0.17 -0.84 16 25 C -0.12 -0.89 5.31 -26.51 -0.14 -1.03 16 26 C -0.18 -3.07 7.69 -25.82 -0.20 -3.27 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.38 9.96 7.92 -40.82 -0.32 9.64 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 31 H 0.40 4.03 8.73 -40.82 -0.36 3.67 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 35 H 0.09 1.21 6.30 -51.93 -0.33 0.89 16 36 H 0.10 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -31.36 346.64 -9.61 -40.97 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.26 Total: 10.71 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.78 Total: -11.29 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.16 Total: -54.05 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.36 -9.61 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022549441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.063 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds