Wall clock time and date at job start Tue Mar 31 2020 00:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48500 * 109.46923 * 269.99393 * 3 2 1 5 5 H 1.48491 * 109.47254 * 30.00080 * 3 2 1 6 6 H 1.48503 * 109.47073 * 150.00070 * 3 2 1 7 7 C 1.38810 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00683 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99699 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85420 * 23.80164 * 10 9 7 12 12 C 1.53781 * 113.61405 * 154.99879 * 10 9 7 13 13 C 1.53786 * 87.17350 * 140.02258 * 12 10 9 14 14 H 1.08993 * 113.61491 * 89.15923 * 13 12 10 15 15 N 1.46501 * 113.61366 * 220.06429 * 13 12 10 16 16 C 1.34773 * 120.00122 * 204.99908 * 15 13 12 17 17 O 1.21289 * 119.99571 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00316 * 179.97438 * 16 15 13 19 19 C 1.53003 * 109.47285 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.63686 * 54.58678 * 19 18 16 21 21 C 1.53022 * 109.64501 * 293.94762 * 19 18 16 22 22 C 1.50065 * 110.14464 * 190.87698 * 21 19 18 23 23 C 1.29438 * 124.07915 * 17.13371 * 22 21 19 24 24 C 1.50067 * 124.07746 * 359.52885 * 23 22 21 25 25 C 1.53030 * 110.14536 * 17.12797 * 24 23 22 26 26 C 1.53782 * 113.68817 * 252.53446 * 10 9 7 27 27 H 0.97002 * 120.00266 * 0.02562 * 1 2 3 28 28 H 0.96990 * 120.00418 * 359.97438 * 9 7 2 29 29 H 1.09002 * 113.61445 * 254.61257 * 12 10 9 30 30 H 1.09002 * 113.61408 * 25.42988 * 12 10 9 31 31 H 0.97002 * 119.99797 * 24.99368 * 15 13 12 32 32 H 1.09002 * 109.47503 * 300.00170 * 18 16 15 33 33 H 1.09005 * 109.47302 * 60.00162 * 18 16 15 34 34 H 1.09001 * 109.35431 * 311.08711 * 21 19 18 35 35 H 1.08997 * 109.35488 * 70.66733 * 21 19 18 36 36 H 1.08004 * 117.95708 * 197.10578 * 22 21 19 37 37 H 1.07999 * 117.96273 * 179.50450 * 23 22 21 38 38 H 1.09001 * 109.35987 * 256.92909 * 24 23 22 39 39 H 1.08994 * 109.24962 * 137.27170 * 24 23 22 40 40 H 1.08998 * 109.64114 * 190.88132 * 25 24 23 41 41 H 1.09005 * 109.80832 * 70.35371 * 25 24 23 42 42 H 1.08997 * 113.61668 * 334.55345 * 26 10 9 43 43 H 1.08998 * 113.61674 * 105.37854 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0656 -3.5639 0.4059 12 6 1.2601 -4.8288 0.5961 13 6 1.8476 -5.6998 -0.5270 14 1 2.7974 -6.1665 -0.2661 15 7 0.8863 -6.6451 -1.1003 16 6 1.3229 -7.7738 -1.6933 17 8 2.5117 -8.0068 -1.7528 18 6 0.3341 -8.7464 -2.2826 19 6 1.0855 -9.9327 -2.8898 20 1 1.7410 -10.3742 -2.1392 21 6 1.9126 -9.4595 -4.0871 22 6 2.4406 -10.6394 -4.8493 23 6 1.9784 -11.8429 -4.7344 24 6 0.8565 -12.2286 -3.8153 25 6 0.0809 -10.9836 -3.3791 26 6 2.0009 -4.4032 -1.3428 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 1.5908 -5.1202 1.5930 30 1 0.1798 -4.7002 0.5292 31 1 -0.0644 -6.4585 -1.0530 32 1 -0.3360 -9.1024 -1.5000 33 1 -0.2466 -8.2485 -3.0592 34 1 1.2854 -8.8564 -4.7437 35 1 2.7476 -8.8549 -3.7331 36 1 3.2568 -10.4739 -5.5370 37 1 2.4278 -12.6178 -5.3377 38 1 1.2649 -12.7263 -2.9357 39 1 0.1835 -12.9097 -4.3359 40 1 -0.6021 -11.2423 -2.5700 41 1 -0.4838 -10.5860 -4.2224 42 1 1.1232 -4.1590 -1.9410 43 1 2.9291 -4.3499 -1.9117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022549441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:18 Heat of formation + Delta-G solvation = -31.236418 kcal Electronic energy + Delta-G solvation = -21094.167713 eV Core-core repulsion = 17945.602042 eV Total energy + Delta-G solvation = -3148.565671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19799 -39.82494 -38.70764 -35.75557 -34.26581 -33.58541 -31.79580 -31.57674 -28.42498 -26.53531 -26.25849 -24.30811 -23.67696 -22.15508 -21.30466 -20.58347 -19.15518 -18.85360 -17.83300 -17.50499 -16.83074 -16.35692 -16.18755 -16.00437 -15.48334 -15.07024 -14.90646 -14.62867 -14.24965 -13.87647 -13.70363 -13.43510 -13.29789 -13.17840 -13.15310 -12.92486 -12.82525 -12.42058 -12.22314 -12.18460 -12.03681 -11.76544 -11.58239 -11.48904 -11.46614 -10.98927 -10.87900 -10.56950 -9.92686 -9.80616 -8.98968 -7.96002 -5.23961 1.43985 1.47691 1.48665 1.57153 1.73248 2.31253 2.57082 3.35751 3.69321 3.74264 3.79352 3.85820 3.89361 3.98222 4.13155 4.26593 4.30860 4.32661 4.45099 4.51048 4.61152 4.72823 4.77554 4.80978 4.85774 4.88922 4.90976 4.98286 5.07390 5.12356 5.15404 5.17604 5.26352 5.39346 5.43321 5.51484 5.54371 5.72114 5.81360 6.11250 6.26658 6.68614 7.33185 7.37408 8.08788 8.32503 9.27098 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043789 B = 0.002627 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.278047 B =10656.286942 C =10820.566512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.149 3.851 11 H 0.076 0.924 12 C -0.139 4.139 13 C 0.136 3.864 14 H 0.102 0.898 15 N -0.709 5.709 16 C 0.506 3.494 17 O -0.583 6.583 18 C -0.131 4.131 19 C -0.068 4.068 20 H 0.060 0.940 21 C -0.092 4.092 22 C -0.168 4.168 23 C -0.162 4.162 24 C -0.093 4.093 25 C -0.111 4.111 26 C -0.170 4.170 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.413 0.587 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -24.862 -6.156 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.038 3.962 11 H 0.094 0.906 12 C -0.179 4.179 13 C 0.030 3.970 14 H 0.120 0.880 15 N -0.360 5.360 16 C 0.295 3.705 17 O -0.463 6.463 18 C -0.170 4.170 19 C -0.087 4.087 20 H 0.078 0.922 21 C -0.129 4.129 22 C -0.186 4.186 23 C -0.180 4.180 24 C -0.129 4.129 25 C -0.149 4.149 26 C -0.212 4.212 27 H 0.060 0.940 28 H 0.208 0.792 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.250 0.750 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.293 -24.885 -6.172 25.672 hybrid contribution -0.020 1.452 -0.187 1.464 sum -1.313 -23.433 -6.359 24.316 Atomic orbital electron populations 1.69795 1.06486 1.26091 1.59485 1.25537 0.96411 1.01010 1.03734 0.85175 0.77783 0.79677 0.77353 1.21597 1.22101 1.19495 1.19690 0.91522 0.85437 1.41074 0.90730 1.42492 1.05379 1.00755 1.87481 1.21669 0.95683 0.84218 0.94607 0.90589 1.23651 1.00997 0.94927 0.98290 1.22081 0.93704 0.87019 0.94158 0.87966 1.45989 1.10769 1.21003 1.58237 1.21413 0.90031 0.82081 0.77011 1.90656 1.19403 1.76864 1.59366 1.21832 0.97491 0.94932 1.02762 1.20904 0.96621 0.94713 0.96458 0.92159 1.20565 0.99851 0.96410 0.96081 1.22154 1.00495 0.95332 1.00621 1.22265 0.98942 0.96717 1.00097 1.20507 0.95809 0.98112 0.98515 1.21673 0.97043 0.94420 1.01743 1.24182 1.01003 0.96647 0.99356 0.93972 0.79170 0.90135 0.89335 0.75014 0.86008 0.86994 0.91112 0.92209 0.88441 0.87266 0.90704 0.89492 0.89700 0.91115 0.91087 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.50 13.06 21.65 0.28 -58.21 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.25 -13.56 9.97 84.03 0.84 -12.72 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -35.78 5.40 -320.43 -1.73 -37.51 16 10 C 0.15 5.73 4.48 45.52 0.20 5.94 16 11 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 12 C -0.14 -4.13 7.58 31.12 0.24 -3.90 16 13 C 0.14 3.90 4.25 45.58 0.19 4.09 16 14 H 0.10 3.13 7.47 -2.39 -0.02 3.11 16 15 N -0.71 -16.28 5.36 -439.75 -2.36 -18.63 16 16 C 0.51 12.19 7.59 87.65 0.67 12.85 16 17 O -0.58 -19.00 13.70 -3.06 -0.04 -19.04 16 18 C -0.13 -1.99 5.17 29.85 0.15 -1.83 16 19 C -0.07 -1.19 1.87 -10.65 -0.02 -1.21 16 20 H 0.06 1.31 7.93 -2.39 -0.02 1.29 16 21 C -0.09 -1.96 5.06 29.66 0.15 -1.81 16 22 C -0.17 -3.28 9.80 27.04 0.27 -3.01 16 23 C -0.16 -2.62 9.80 27.04 0.27 -2.36 16 24 C -0.09 -1.17 6.12 29.66 0.18 -0.99 16 25 C -0.11 -1.36 5.31 30.74 0.16 -1.20 16 26 C -0.17 -5.89 7.69 31.18 0.24 -5.65 16 27 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.38 19.66 7.92 -92.72 -0.73 18.92 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 31 H 0.41 7.24 8.73 -92.71 -0.81 6.44 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.34 8.09 -2.38 -0.02 1.32 16 34 H 0.07 1.40 8.06 -2.39 -0.02 1.38 16 35 H 0.06 1.65 6.30 -2.39 -0.02 1.64 16 36 H 0.10 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.11 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.82 8.13 -2.38 -0.02 0.80 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -68.44 346.64 1.63 -66.81 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.55 Total: 34.16 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.00 Total: -15.60 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -3.81 Total: -114.36 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.04 Total: -19.04 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -68.44 1.63 -66.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022549441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.573 kcal (2) G-P(sol) polarization free energy of solvation -68.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds