Wall clock time and date at job start Tue Mar 31 2020 00:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.85520 * 23.80746 * 10 9 7 12 12 C 1.53785 * 113.61216 * 154.99972 * 10 9 7 13 13 C 1.53784 * 87.08114 * 139.98211 * 12 10 9 14 14 H 1.09001 * 113.61354 * 89.11995 * 13 12 10 15 15 N 1.46495 * 113.61463 * 220.02150 * 13 12 10 16 16 C 1.34779 * 120.00274 * 205.00198 * 15 13 12 17 17 O 1.21285 * 119.99798 * 359.97438 * 16 15 13 18 18 C 1.50695 * 120.00129 * 179.97438 * 16 15 13 19 19 C 1.52309 * 115.91098 * 111.82944 * 18 16 15 20 20 C 1.51366 * 60.10261 * 106.18994 * 19 18 16 21 21 H 1.09001 * 115.85002 * 251.98459 * 20 19 18 22 22 C 1.52532 * 117.53346 * 111.34421 * 20 19 18 23 23 C 1.52872 * 110.48587 * 270.71146 * 22 20 19 24 24 C 1.53298 * 108.58106 * 53.45727 * 23 22 20 25 25 C 1.52067 * 114.63971 * 325.57923 * 18 16 15 26 26 C 1.53779 * 87.08043 * 334.56708 * 13 12 10 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 29 29 H 1.08999 * 113.61550 * 254.53185 * 12 10 9 30 30 H 1.08996 * 113.61570 * 25.43425 * 12 10 9 31 31 H 0.96995 * 120.00312 * 24.99741 * 15 13 12 32 32 H 1.09001 * 117.53738 * 213.89689 * 19 18 16 33 33 H 1.08999 * 117.53721 * 359.14945 * 19 18 16 34 34 H 1.09007 * 110.05154 * 149.84782 * 22 20 19 35 35 H 1.09005 * 108.21744 * 30.41243 * 22 20 19 36 36 H 1.08999 * 109.61702 * 293.72875 * 23 22 20 37 37 H 1.08998 * 109.77021 * 173.27513 * 23 22 20 38 38 H 1.09000 * 109.61674 * 165.83069 * 24 23 22 39 39 H 1.08998 * 109.76691 * 45.37707 * 24 23 22 40 40 H 1.08994 * 109.26984 * 314.64046 * 25 18 16 41 41 H 1.09000 * 109.26785 * 74.10876 * 25 18 16 42 42 H 1.08995 * 113.61453 * 270.88459 * 26 13 12 43 43 H 1.09003 * 113.61291 * 139.98180 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0658 -3.5638 0.4060 12 6 1.2603 -4.8287 0.5961 13 6 1.8482 -5.6976 -0.5284 14 1 2.7988 -6.1634 -0.2686 15 7 0.8878 -6.6432 -1.1025 16 6 1.3254 -7.7707 -1.6972 17 8 2.5144 -8.0022 -1.7576 18 6 0.3374 -8.7437 -2.2872 19 6 0.3474 -8.8640 -3.8055 20 6 0.9330 -9.9723 -2.9569 21 1 2.0197 -10.0566 -2.9693 22 6 0.1941 -11.3064 -2.9316 23 6 -0.8496 -11.3188 -1.8146 24 6 -1.7526 -10.0906 -1.9761 25 6 -0.9758 -8.8524 -1.5281 26 6 1.9992 -4.4021 -1.3432 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 0.0005 29 1 1.5918 -5.1211 1.5924 30 1 0.1800 -4.7002 0.5291 31 1 -0.0631 -6.4579 -1.0545 32 1 -0.6038 -9.0557 -4.3021 33 1 1.0484 -8.2368 -4.3561 34 1 0.9003 -12.1219 -2.7753 35 1 -0.3035 -11.4387 -3.8924 36 1 -0.3500 -11.2811 -0.8466 37 1 -1.4502 -12.2259 -1.8813 38 1 -2.6430 -10.2072 -1.3583 39 1 -2.0437 -9.9818 -3.0208 40 1 -0.7692 -8.9241 -0.4604 41 1 -1.5761 -7.9628 -1.7188 42 1 1.1210 -4.1570 -1.9403 43 1 2.9273 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022681943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:16 Heat of formation + Delta-G solvation = 0.146060 kcal Electronic energy + Delta-G solvation = -21583.666119 eV Core-core repulsion = 18436.461294 eV Total energy + Delta-G solvation = -3147.204824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88090 -38.98482 -37.49305 -34.13363 -33.36502 -32.79375 -31.04706 -29.80293 -25.54374 -25.11291 -24.68838 -23.76605 -21.91032 -21.57194 -20.44489 -19.47805 -18.44970 -17.52803 -17.06511 -16.18387 -15.29787 -14.91364 -14.69035 -14.56991 -14.24400 -14.19362 -13.97292 -13.59600 -13.09366 -13.01380 -12.62770 -12.32891 -12.18032 -12.04113 -11.91168 -11.29271 -11.26129 -11.15997 -10.91466 -10.75341 -10.61212 -10.51830 -10.32043 -10.26062 -10.07430 -9.89547 -9.69336 -9.47397 -8.90766 -8.71901 -6.99188 -5.80735 -3.09638 2.56190 3.24923 3.42873 3.47312 3.48287 3.63466 4.29011 4.40909 4.52531 4.57393 4.63384 4.79655 4.94988 4.97005 5.06503 5.20250 5.24188 5.25285 5.34176 5.38768 5.47463 5.51866 5.56843 5.62764 5.80980 5.82984 5.83907 5.86765 5.92545 5.97659 6.02304 6.13344 6.14067 6.25330 6.31436 6.53548 6.61369 6.76647 7.07057 7.67804 7.67863 8.34536 8.37948 9.49110 10.05762 10.40425 11.41642 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039310 B = 0.003021 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.123825 B = 9266.753633 C = 9489.870909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.158 4.158 13 C 0.117 3.883 14 H 0.108 0.892 15 N -0.708 5.708 16 C 0.544 3.456 17 O -0.547 6.547 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.115 4.115 21 H 0.113 0.887 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.083 4.083 26 C -0.176 4.176 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.399 0.601 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -22.633 -4.570 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.198 4.198 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.358 5.358 16 C 0.330 3.670 17 O -0.424 6.424 18 C -0.151 4.151 19 C -0.189 4.189 20 C -0.134 4.134 21 H 0.131 0.869 22 C -0.126 4.126 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.120 4.120 26 C -0.218 4.218 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.234 0.766 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.018 -22.582 -4.584 23.239 hybrid contribution -0.337 1.149 -0.057 1.199 sum -3.355 -21.432 -4.640 22.184 Atomic orbital electron populations 1.69649 1.05150 1.25896 1.57467 1.24763 0.95538 0.97805 1.02744 0.86249 0.78538 0.83383 0.77918 1.21675 1.21179 1.21206 1.19276 0.91130 0.84167 1.43017 0.91039 1.42349 1.05674 0.99759 1.87024 1.21352 0.95475 0.84933 0.92637 0.90228 1.23860 1.01182 0.97341 0.97446 1.22501 0.93282 0.87488 0.95538 0.87385 1.45992 1.10508 1.21163 1.58102 1.19637 0.88482 0.81354 0.77492 1.90668 1.16997 1.76254 1.58526 1.21061 0.97624 0.99983 0.96450 1.22835 1.03183 1.02434 0.90414 1.21823 1.00567 0.89385 1.01622 0.86893 1.21046 0.97579 0.94957 0.99024 1.21572 0.97153 0.97844 0.99244 1.21590 0.97999 0.94360 1.01760 1.20824 0.92734 0.98923 0.99520 1.24327 1.01793 0.95191 1.00499 0.93396 0.78095 0.91514 0.89996 0.76595 0.87903 0.88389 0.91223 0.91547 0.91563 0.91743 0.91360 0.91607 0.90936 0.90961 0.90233 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.60 5.40 -52.64 -0.28 -17.89 16 10 C 0.17 3.32 4.48 -67.12 -0.30 3.02 16 11 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 12 C -0.16 -2.52 7.58 -25.92 -0.20 -2.72 16 13 C 0.12 1.80 4.24 -67.12 -0.28 1.52 16 14 H 0.11 1.76 7.47 -51.93 -0.39 1.37 16 15 N -0.71 -9.54 5.25 -53.02 -0.28 -9.82 16 16 C 0.54 7.78 7.27 -10.99 -0.08 7.70 16 17 O -0.55 -9.82 15.67 5.55 0.09 -9.74 16 18 C -0.15 -1.59 2.54 -156.96 -0.40 -1.99 16 19 C -0.15 -1.48 9.21 -27.91 -0.26 -1.74 16 20 C -0.12 -1.17 5.49 -92.16 -0.51 -1.67 16 21 H 0.11 1.35 7.50 -51.93 -0.39 0.96 16 22 C -0.09 -0.68 5.87 -27.04 -0.16 -0.83 16 23 C -0.12 -0.86 5.94 -26.64 -0.16 -1.01 16 24 C -0.12 -0.84 5.70 -26.64 -0.15 -0.99 16 25 C -0.08 -0.70 4.75 -27.27 -0.13 -0.83 16 26 C -0.18 -3.14 7.68 -25.92 -0.20 -3.34 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.39 10.03 7.92 -40.82 -0.32 9.70 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 31 H 0.40 4.55 7.73 -40.82 -0.32 4.24 16 32 H 0.10 0.82 7.28 -51.93 -0.38 0.44 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 36 H 0.07 0.52 8.04 -51.93 -0.42 0.11 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.44 7.13 -51.93 -0.37 0.07 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.56 7.81 -51.93 -0.41 0.15 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -31.58 342.87 -9.85 -41.42 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.17 Total: 11.04 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.07 Total: -10.27 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.16 Total: -54.92 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.58 -9.85 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022681943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.570 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds