Wall clock time and date at job start Tue Mar 31 2020 00:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.85520 * 23.80746 * 10 9 7 12 12 C 1.53785 * 113.61216 * 154.99972 * 10 9 7 13 13 C 1.53784 * 87.08114 * 139.98211 * 12 10 9 14 14 H 1.09001 * 113.61354 * 89.11995 * 13 12 10 15 15 N 1.46495 * 113.61463 * 220.02150 * 13 12 10 16 16 C 1.34779 * 120.00274 * 205.00198 * 15 13 12 17 17 O 1.21285 * 119.99798 * 359.97438 * 16 15 13 18 18 C 1.50695 * 120.00129 * 179.97438 * 16 15 13 19 19 C 1.52309 * 115.91098 * 111.82944 * 18 16 15 20 20 C 1.51366 * 60.10261 * 106.18994 * 19 18 16 21 21 H 1.09001 * 115.85002 * 251.98459 * 20 19 18 22 22 C 1.52532 * 117.53346 * 111.34421 * 20 19 18 23 23 C 1.52872 * 110.48587 * 270.71146 * 22 20 19 24 24 C 1.53298 * 108.58106 * 53.45727 * 23 22 20 25 25 C 1.52067 * 114.63971 * 325.57923 * 18 16 15 26 26 C 1.53779 * 87.08043 * 334.56708 * 13 12 10 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 29 29 H 1.08999 * 113.61550 * 254.53185 * 12 10 9 30 30 H 1.08996 * 113.61570 * 25.43425 * 12 10 9 31 31 H 0.96995 * 120.00312 * 24.99741 * 15 13 12 32 32 H 1.09001 * 117.53738 * 213.89689 * 19 18 16 33 33 H 1.08999 * 117.53721 * 359.14945 * 19 18 16 34 34 H 1.09007 * 110.05154 * 149.84782 * 22 20 19 35 35 H 1.09005 * 108.21744 * 30.41243 * 22 20 19 36 36 H 1.08999 * 109.61702 * 293.72875 * 23 22 20 37 37 H 1.08998 * 109.77021 * 173.27513 * 23 22 20 38 38 H 1.09000 * 109.61674 * 165.83069 * 24 23 22 39 39 H 1.08998 * 109.76691 * 45.37707 * 24 23 22 40 40 H 1.08994 * 109.26984 * 314.64046 * 25 18 16 41 41 H 1.09000 * 109.26785 * 74.10876 * 25 18 16 42 42 H 1.08995 * 113.61453 * 270.88459 * 26 13 12 43 43 H 1.09003 * 113.61291 * 139.98180 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0658 -3.5638 0.4060 12 6 1.2603 -4.8287 0.5961 13 6 1.8482 -5.6976 -0.5284 14 1 2.7988 -6.1634 -0.2686 15 7 0.8878 -6.6432 -1.1025 16 6 1.3254 -7.7707 -1.6972 17 8 2.5144 -8.0022 -1.7576 18 6 0.3374 -8.7437 -2.2872 19 6 0.3474 -8.8640 -3.8055 20 6 0.9330 -9.9723 -2.9569 21 1 2.0197 -10.0566 -2.9693 22 6 0.1941 -11.3064 -2.9316 23 6 -0.8496 -11.3188 -1.8146 24 6 -1.7526 -10.0906 -1.9761 25 6 -0.9758 -8.8524 -1.5281 26 6 1.9992 -4.4021 -1.3432 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 0.0005 29 1 1.5918 -5.1211 1.5924 30 1 0.1800 -4.7002 0.5291 31 1 -0.0631 -6.4579 -1.0545 32 1 -0.6038 -9.0557 -4.3021 33 1 1.0484 -8.2368 -4.3561 34 1 0.9003 -12.1219 -2.7753 35 1 -0.3035 -11.4387 -3.8924 36 1 -0.3500 -11.2811 -0.8466 37 1 -1.4502 -12.2259 -1.8813 38 1 -2.6430 -10.2072 -1.3583 39 1 -2.0437 -9.9818 -3.0208 40 1 -0.7692 -8.9241 -0.4604 41 1 -1.5761 -7.9628 -1.7188 42 1 1.1210 -4.1570 -1.9403 43 1 2.9273 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022681943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:12 Heat of formation + Delta-G solvation = -19.327570 kcal Electronic energy + Delta-G solvation = -21584.510559 eV Core-core repulsion = 18436.461294 eV Total energy + Delta-G solvation = -3148.049264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.84544 -40.21636 -38.72163 -35.82018 -34.35062 -34.04833 -32.09171 -31.41216 -26.81376 -26.53973 -25.82022 -25.04139 -23.21900 -22.34487 -21.50140 -20.86636 -19.42947 -19.07722 -18.37481 -17.59546 -16.52519 -16.19031 -16.16752 -15.74749 -15.36154 -15.00150 -14.86075 -14.82150 -14.57284 -14.25611 -13.65298 -13.54997 -13.33838 -13.17033 -12.94796 -12.88015 -12.78820 -12.28842 -12.19795 -12.08195 -11.92572 -11.78125 -11.73684 -11.53112 -11.41876 -10.99978 -10.88205 -10.64075 -10.61906 -10.01113 -9.00223 -7.96119 -5.24466 1.46200 1.47496 1.49984 1.55953 2.14748 2.56458 2.78935 3.35152 3.50391 3.64224 3.69836 3.75237 3.81622 3.90020 3.94450 4.14160 4.21981 4.28760 4.30676 4.35679 4.53323 4.60289 4.68325 4.75178 4.78840 4.85396 4.87516 4.98918 5.01456 5.11328 5.11514 5.12801 5.24564 5.28044 5.32905 5.37616 5.39831 5.49784 5.52826 5.65352 6.26200 6.55489 7.21683 7.32820 8.07778 8.31822 9.26775 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039310 B = 0.003021 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.123825 B = 9266.753633 C = 9489.870909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.295 1.295 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.151 3.849 11 H 0.079 0.921 12 C -0.138 4.138 13 C 0.134 3.866 14 H 0.103 0.897 15 N -0.700 5.700 16 C 0.539 3.461 17 O -0.589 6.589 18 C -0.152 4.152 19 C -0.144 4.144 20 C -0.117 4.117 21 H 0.087 0.913 22 C -0.085 4.085 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.081 4.081 26 C -0.170 4.170 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.412 0.588 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -24.009 -4.737 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.040 3.960 11 H 0.097 0.903 12 C -0.178 4.178 13 C 0.028 3.972 14 H 0.121 0.879 15 N -0.349 5.349 16 C 0.327 3.673 17 O -0.469 6.469 18 C -0.155 4.155 19 C -0.181 4.181 20 C -0.136 4.136 21 H 0.105 0.895 22 C -0.123 4.123 23 C -0.157 4.157 24 C -0.154 4.154 25 C -0.119 4.119 26 C -0.212 4.212 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.249 0.751 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.938 -24.001 -4.749 24.782 hybrid contribution 0.033 1.507 -0.028 1.507 sum -3.905 -22.495 -4.777 23.326 Atomic orbital electron populations 1.69794 1.06497 1.26199 1.59335 1.25540 0.96400 1.01013 1.03604 0.85243 0.77254 0.79315 0.78144 1.22074 1.20319 1.20655 1.19661 0.91547 0.85421 1.41354 0.90693 1.42482 1.05381 1.00719 1.87476 1.21654 0.95761 0.84199 0.94361 0.90343 1.23660 1.01038 0.94850 0.98226 1.22152 0.93606 0.86961 0.94493 0.87893 1.45874 1.10850 1.20602 1.57617 1.20308 0.88601 0.81647 0.76740 1.90647 1.19033 1.77172 1.60084 1.21094 0.97865 0.99361 0.97157 1.22905 1.03915 1.01657 0.89597 1.21862 0.99550 0.90729 1.01494 0.89493 1.21072 0.97723 0.93285 1.00176 1.21581 0.97076 0.98815 0.98275 1.21601 0.98044 0.93184 1.02536 1.20875 0.91647 1.00432 0.98913 1.24163 1.01089 0.96404 0.99517 0.93938 0.79151 0.89889 0.89314 0.75104 0.85308 0.89965 0.90928 0.89996 0.92719 0.89992 0.90023 0.90717 0.91355 0.89946 0.91061 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.57 13.06 21.65 0.28 -58.28 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.25 -13.75 9.97 84.03 0.84 -12.91 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -35.98 5.40 -320.44 -1.73 -37.71 16 10 C 0.15 5.89 4.48 45.52 0.20 6.09 16 11 H 0.08 3.06 8.10 -2.38 -0.02 3.04 16 12 C -0.14 -4.22 7.58 31.12 0.24 -3.98 16 13 C 0.13 4.02 4.24 45.52 0.19 4.21 16 14 H 0.10 3.30 7.47 -2.39 -0.02 3.28 16 15 N -0.70 -18.14 5.25 -440.04 -2.31 -20.45 16 16 C 0.54 15.19 7.27 87.66 0.64 15.83 16 17 O -0.59 -21.47 15.67 -3.04 -0.05 -21.51 16 18 C -0.15 -3.08 2.54 -53.77 -0.14 -3.21 16 19 C -0.14 -2.60 9.21 29.83 0.27 -2.32 16 20 C -0.12 -2.28 5.49 -11.79 -0.06 -2.34 16 21 H 0.09 2.14 7.50 -2.39 -0.02 2.12 16 22 C -0.09 -1.12 5.87 30.40 0.18 -0.94 16 23 C -0.12 -1.38 5.94 30.65 0.18 -1.20 16 24 C -0.12 -1.26 5.70 30.65 0.17 -1.08 16 25 C -0.08 -1.19 4.75 30.25 0.14 -1.05 16 26 C -0.17 -6.05 7.68 31.12 0.24 -5.81 16 27 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.38 19.78 7.92 -92.71 -0.73 19.05 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 30 H 0.09 2.63 8.09 -2.39 -0.02 2.61 16 31 H 0.41 8.69 7.73 -92.71 -0.72 7.98 16 32 H 0.13 1.65 7.28 -2.39 -0.02 1.64 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.08 0.84 8.05 -2.38 -0.02 0.82 16 36 H 0.05 0.76 8.04 -2.39 -0.02 0.74 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.70 7.13 -2.39 -0.02 0.69 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.04 7.81 -2.39 -0.02 1.02 16 42 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -68.27 342.87 1.34 -66.93 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.45 Total: 35.41 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.57 Total: -12.43 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -3.76 Total: -116.44 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -68.27 1.34 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022681943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.597 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds