Wall clock time and date at job start Tue Mar 31 2020 00:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48500 * 109.47161 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46893 * 299.99482 * 3 2 1 6 6 H 1.48501 * 109.47068 * 59.99468 * 3 2 1 7 7 C 1.38810 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00006 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99899 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99797 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.84984 * 23.81332 * 10 9 7 12 12 C 1.53780 * 113.61016 * 155.00023 * 10 9 7 13 13 C 1.53781 * 87.08106 * 89.20580 * 12 10 9 14 14 H 1.08998 * 113.61479 * 140.05977 * 13 12 10 15 15 N 1.46503 * 113.61372 * 270.88311 * 13 12 10 16 16 C 1.34772 * 119.99695 * 203.46837 * 15 13 12 17 17 O 1.21269 * 120.00639 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99586 * 179.97438 * 16 15 13 19 19 C 1.52303 * 115.91582 * 248.17424 * 18 16 15 20 20 C 1.52067 * 115.31466 * 180.08595 * 18 16 15 21 21 H 1.09004 * 117.25268 * 359.64128 * 20 18 16 22 22 C 1.52749 * 120.59558 * 211.19787 * 20 18 16 23 23 C 1.52882 * 110.12749 * 21.12993 * 22 20 18 24 24 C 1.53298 * 108.73074 * 305.75385 * 23 22 20 25 25 C 1.52073 * 114.63685 * 34.41743 * 18 16 15 26 26 C 1.53785 * 87.17186 * 25.47457 * 13 12 10 27 27 H 0.97005 * 119.99884 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99728 * 0.02562 * 9 7 2 29 29 H 1.09000 * 113.61687 * 334.65631 * 12 10 9 30 30 H 1.09003 * 113.69043 * 203.75974 * 12 10 9 31 31 H 0.97003 * 119.99459 * 23.46497 * 15 13 12 32 32 H 1.09005 * 117.53815 * 1.58317 * 19 18 16 33 33 H 1.08999 * 117.54336 * 146.83872 * 19 18 16 34 34 H 1.09004 * 109.22229 * 261.02755 * 22 20 18 35 35 H 1.08997 * 109.52375 * 141.42729 * 22 20 18 36 36 H 1.09002 * 109.62024 * 185.93485 * 23 22 20 37 37 H 1.08998 * 109.61715 * 65.57343 * 23 22 20 38 38 H 1.09005 * 109.61722 * 194.07904 * 24 23 22 39 39 H 1.08994 * 109.62179 * 314.62024 * 24 23 22 40 40 H 1.08992 * 109.26734 * 45.36161 * 25 18 16 41 41 H 1.09004 * 109.26519 * 285.89173 * 25 18 16 42 42 H 1.08992 * 113.61661 * 89.07864 * 26 13 12 43 43 H 1.08997 * 113.60941 * 219.98089 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0655 -3.5639 0.4061 12 6 1.2600 -4.8287 0.5960 13 6 0.7221 -5.0805 -0.8225 14 1 0.6499 -6.1369 -1.0809 15 7 -0.5020 -4.3353 -1.1268 16 6 -1.3378 -4.7761 -2.0877 17 8 -1.0770 -5.7897 -2.7002 18 6 -2.5973 -4.0098 -2.4004 19 6 -3.9046 -4.6991 -2.0324 20 6 -3.4630 -4.6029 -3.5010 21 1 -3.1092 -5.5181 -3.9757 22 6 -4.3043 -3.6993 -4.4004 23 6 -3.7491 -2.2749 -4.3822 24 6 -3.6571 -1.8010 -2.9272 25 6 -2.4723 -2.5006 -2.2608 26 6 2.0008 -4.4046 -1.3450 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 0.4926 -4.5187 1.3053 30 1 1.8856 -5.6366 0.9755 31 1 -0.7107 -3.5247 -0.6366 32 1 -3.8415 -5.6747 -1.5501 33 1 -4.7345 -4.0686 -1.7134 34 1 -5.3327 -3.6907 -4.0393 35 1 -4.2850 -4.0815 -5.4210 36 1 -4.4139 -1.6158 -4.9404 37 1 -2.7574 -2.2629 -4.8344 38 1 -3.5058 -0.7218 -2.9027 39 1 -4.5764 -2.0563 -2.4003 40 1 -1.5474 -2.1710 -2.7339 41 1 -2.4481 -2.2381 -1.2031 42 1 2.8298 -5.0960 -1.4959 43 1 1.8310 -3.7525 -2.2017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022681945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:19 Heat of formation + Delta-G solvation = 7.511790 kcal Electronic energy + Delta-G solvation = -22754.768736 eV Core-core repulsion = 19607.883313 eV Total energy + Delta-G solvation = -3146.885422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55340 -38.97232 -37.25609 -33.66038 -32.90751 -32.67358 -30.58864 -29.83600 -25.21710 -25.11498 -24.39413 -23.76658 -22.09560 -21.28627 -20.22937 -18.99160 -18.15179 -17.39171 -16.98165 -15.67875 -15.01695 -14.79322 -14.40648 -14.29904 -14.14624 -13.75129 -13.74933 -13.29242 -13.15668 -13.00838 -12.34511 -12.04836 -12.00893 -11.79740 -11.76175 -11.45018 -10.93742 -10.87475 -10.83329 -10.68595 -10.43358 -10.20608 -10.16088 -9.88245 -9.81854 -9.61085 -9.49055 -9.28660 -8.95434 -8.49991 -7.08148 -5.88632 -3.16987 2.84420 3.37527 3.44207 3.45596 3.51195 3.91801 4.50188 4.69024 4.77382 4.88915 5.02420 5.10534 5.14373 5.26931 5.33592 5.35391 5.43145 5.53032 5.58550 5.68006 5.75061 5.83845 5.85504 5.89576 5.98207 6.06857 6.13962 6.17573 6.25070 6.29071 6.32721 6.34389 6.43778 6.50059 6.58694 6.61217 6.71695 6.84670 7.15809 7.64694 7.97774 8.30741 8.63495 9.41415 9.95688 10.29473 11.33905 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.006327 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.804087 B = 4424.674662 C = 5900.546604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.703 5.703 10 C 0.164 3.836 11 H 0.066 0.934 12 C -0.168 4.168 13 C 0.122 3.878 14 H 0.089 0.911 15 N -0.695 5.695 16 C 0.548 3.452 17 O -0.556 6.556 18 C -0.138 4.138 19 C -0.156 4.156 20 C -0.118 4.118 21 H 0.113 0.887 22 C -0.087 4.087 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.082 4.082 26 C -0.187 4.187 27 H 0.256 0.744 28 H 0.379 0.621 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.409 0.591 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 -7.560 -4.022 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.344 5.344 10 C 0.052 3.948 11 H 0.084 0.916 12 C -0.208 4.208 13 C 0.017 3.983 14 H 0.107 0.893 15 N -0.347 5.347 16 C 0.335 3.665 17 O -0.435 6.435 18 C -0.141 4.141 19 C -0.193 4.193 20 C -0.137 4.137 21 H 0.131 0.869 22 C -0.125 4.125 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.119 4.119 26 C -0.229 4.229 27 H 0.066 0.934 28 H 0.214 0.786 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.247 0.753 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.179 -8.092 -4.414 11.683 hybrid contribution 0.163 1.297 0.238 1.328 sum -7.015 -6.795 -4.176 10.622 Atomic orbital electron populations 1.69625 1.04990 1.25741 1.57498 1.24720 0.95608 0.97672 1.02605 0.86103 0.78866 0.83949 0.77157 1.20561 1.21859 1.21846 1.19326 0.91230 0.83779 1.42982 0.90843 1.42215 1.05225 0.99654 1.87301 1.21254 0.95321 0.85548 0.92676 0.91566 1.23859 1.00766 1.00480 0.95654 1.21768 0.84294 0.95666 0.96570 0.89345 1.45826 1.21870 1.29052 1.37983 1.19653 0.83610 0.84217 0.79048 1.90618 1.75733 1.26000 1.51104 1.21129 0.90717 0.96219 1.06044 1.23166 0.95941 1.01477 0.98756 1.22238 1.00121 1.01121 0.90173 0.86910 1.21082 0.98046 0.94568 0.98758 1.21592 1.01492 0.95663 0.97165 1.21541 0.98121 1.00320 0.95306 1.20813 0.99563 0.89107 1.02440 1.24323 0.96429 1.00265 1.01882 0.93449 0.78595 0.91130 0.89176 0.75254 0.88778 0.87874 0.91616 0.91626 0.92061 0.91602 0.91150 0.92061 0.90477 0.90171 0.90516 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.80 13.06 55.49 0.72 -25.08 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.40 9.97 -15.06 -0.15 -6.55 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.70 -16.56 5.19 -52.50 -0.27 -16.83 16 10 C 0.16 3.18 4.57 -66.98 -0.31 2.87 16 11 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 12 C -0.17 -2.72 7.58 -25.92 -0.20 -2.91 16 13 C 0.12 2.12 4.30 -67.11 -0.29 1.83 16 14 H 0.09 1.52 7.50 -51.93 -0.39 1.14 16 15 N -0.69 -12.51 5.01 -53.02 -0.27 -12.78 16 16 C 0.55 9.97 7.26 -10.98 -0.08 9.89 16 17 O -0.56 -11.42 15.62 5.57 0.09 -11.33 16 18 C -0.14 -2.12 2.49 -156.96 -0.39 -2.51 16 19 C -0.16 -2.01 9.29 -26.75 -0.25 -2.26 16 20 C -0.12 -1.60 5.63 -90.88 -0.51 -2.11 16 21 H 0.11 1.67 7.44 -51.93 -0.39 1.29 16 22 C -0.09 -0.98 5.85 -26.92 -0.16 -1.14 16 23 C -0.12 -1.45 5.92 -26.64 -0.16 -1.61 16 24 C -0.12 -1.51 5.71 -26.64 -0.15 -1.67 16 25 C -0.08 -1.28 4.75 -27.27 -0.13 -1.41 16 26 C -0.19 -3.38 7.70 -25.78 -0.20 -3.58 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.38 9.09 5.35 -40.82 -0.22 8.87 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.41 7.66 5.17 -40.82 -0.21 7.45 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 1.16 7.26 -51.93 -0.38 0.78 16 34 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.08 1.34 7.81 -51.93 -0.41 0.94 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -28.99 337.52 -9.69 -38.68 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -6.96 Total: 17.23 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.06 Total: -11.53 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.19 Total: -54.68 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.99 -9.69 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022681945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.188 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds