Wall clock time and date at job start Tue Mar 31 2020 00:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48500 * 109.47161 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46893 * 299.99482 * 3 2 1 6 6 H 1.48501 * 109.47068 * 59.99468 * 3 2 1 7 7 C 1.38810 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00006 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99899 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99797 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.84984 * 23.81332 * 10 9 7 12 12 C 1.53780 * 113.61016 * 155.00023 * 10 9 7 13 13 C 1.53781 * 87.08106 * 89.20580 * 12 10 9 14 14 H 1.08998 * 113.61479 * 140.05977 * 13 12 10 15 15 N 1.46503 * 113.61372 * 270.88311 * 13 12 10 16 16 C 1.34772 * 119.99695 * 203.46837 * 15 13 12 17 17 O 1.21269 * 120.00639 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99586 * 179.97438 * 16 15 13 19 19 C 1.52303 * 115.91582 * 248.17424 * 18 16 15 20 20 C 1.52067 * 115.31466 * 180.08595 * 18 16 15 21 21 H 1.09004 * 117.25268 * 359.64128 * 20 18 16 22 22 C 1.52749 * 120.59558 * 211.19787 * 20 18 16 23 23 C 1.52882 * 110.12749 * 21.12993 * 22 20 18 24 24 C 1.53298 * 108.73074 * 305.75385 * 23 22 20 25 25 C 1.52073 * 114.63685 * 34.41743 * 18 16 15 26 26 C 1.53785 * 87.17186 * 25.47457 * 13 12 10 27 27 H 0.97005 * 119.99884 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99728 * 0.02562 * 9 7 2 29 29 H 1.09000 * 113.61687 * 334.65631 * 12 10 9 30 30 H 1.09003 * 113.69043 * 203.75974 * 12 10 9 31 31 H 0.97003 * 119.99459 * 23.46497 * 15 13 12 32 32 H 1.09005 * 117.53815 * 1.58317 * 19 18 16 33 33 H 1.08999 * 117.54336 * 146.83872 * 19 18 16 34 34 H 1.09004 * 109.22229 * 261.02755 * 22 20 18 35 35 H 1.08997 * 109.52375 * 141.42729 * 22 20 18 36 36 H 1.09002 * 109.62024 * 185.93485 * 23 22 20 37 37 H 1.08998 * 109.61715 * 65.57343 * 23 22 20 38 38 H 1.09005 * 109.61722 * 194.07904 * 24 23 22 39 39 H 1.08994 * 109.62179 * 314.62024 * 24 23 22 40 40 H 1.08992 * 109.26734 * 45.36161 * 25 18 16 41 41 H 1.09004 * 109.26519 * 285.89173 * 25 18 16 42 42 H 1.08992 * 113.61661 * 89.07864 * 26 13 12 43 43 H 1.08997 * 113.60941 * 219.98089 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0655 -3.5639 0.4061 12 6 1.2600 -4.8287 0.5960 13 6 0.7221 -5.0805 -0.8225 14 1 0.6499 -6.1369 -1.0809 15 7 -0.5020 -4.3353 -1.1268 16 6 -1.3378 -4.7761 -2.0877 17 8 -1.0770 -5.7897 -2.7002 18 6 -2.5973 -4.0098 -2.4004 19 6 -3.9046 -4.6991 -2.0324 20 6 -3.4630 -4.6029 -3.5010 21 1 -3.1092 -5.5181 -3.9757 22 6 -4.3043 -3.6993 -4.4004 23 6 -3.7491 -2.2749 -4.3822 24 6 -3.6571 -1.8010 -2.9272 25 6 -2.4723 -2.5006 -2.2608 26 6 2.0008 -4.4046 -1.3450 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 0.4926 -4.5187 1.3053 30 1 1.8856 -5.6366 0.9755 31 1 -0.7107 -3.5247 -0.6366 32 1 -3.8415 -5.6747 -1.5501 33 1 -4.7345 -4.0686 -1.7134 34 1 -5.3327 -3.6907 -4.0393 35 1 -4.2850 -4.0815 -5.4210 36 1 -4.4139 -1.6158 -4.9404 37 1 -2.7574 -2.2629 -4.8344 38 1 -3.5058 -0.7218 -2.9027 39 1 -4.5764 -2.0563 -2.4003 40 1 -1.5474 -2.1710 -2.7339 41 1 -2.4481 -2.2381 -1.2031 42 1 2.8298 -5.0960 -1.4959 43 1 1.8310 -3.7525 -2.2017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022681945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:18 Heat of formation + Delta-G solvation = -9.047338 kcal Electronic energy + Delta-G solvation = -22755.486793 eV Core-core repulsion = 19607.883313 eV Total energy + Delta-G solvation = -3147.603480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85721 -40.33767 -38.66679 -35.49281 -34.22623 -33.98443 -31.99566 -31.45807 -26.69225 -26.53589 -25.83844 -25.18877 -23.54060 -22.39221 -21.52219 -20.50687 -19.44236 -19.11943 -18.35570 -17.15984 -16.64876 -16.34522 -15.89129 -15.70864 -15.40706 -15.12443 -14.87949 -14.83278 -14.65424 -14.24589 -13.64962 -13.49800 -13.36761 -13.23040 -12.94850 -12.88178 -12.83317 -12.54249 -12.11270 -11.92736 -11.81256 -11.74418 -11.72462 -11.44773 -11.18177 -10.96371 -10.84351 -10.66505 -10.60782 -9.97039 -9.00516 -7.94021 -5.21809 1.45897 1.47777 1.49306 1.57675 2.15731 2.56098 2.76146 3.37630 3.48454 3.62277 3.69180 3.73760 3.82834 3.90546 4.00139 4.11870 4.25752 4.28998 4.32928 4.36858 4.54840 4.60811 4.71670 4.78504 4.81228 4.85181 4.91958 4.98670 5.01193 5.04893 5.11399 5.19921 5.25820 5.27189 5.33767 5.36446 5.37730 5.49848 5.53773 5.71064 6.28821 6.51449 7.17823 7.35394 8.07177 8.31169 9.28212 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.006327 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.804087 B = 4424.674662 C = 5900.546604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.064 4.064 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.715 5.715 10 C 0.147 3.853 11 H 0.071 0.929 12 C -0.144 4.144 13 C 0.118 3.882 14 H 0.094 0.906 15 N -0.697 5.697 16 C 0.542 3.458 17 O -0.584 6.584 18 C -0.159 4.159 19 C -0.135 4.135 20 C -0.114 4.114 21 H 0.098 0.902 22 C -0.082 4.082 23 C -0.119 4.119 24 C -0.112 4.112 25 C -0.071 4.071 26 C -0.178 4.178 27 H 0.252 0.748 28 H 0.373 0.627 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.404 0.596 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.346 -8.262 -3.955 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.257 4.257 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.356 5.356 10 C 0.036 3.964 11 H 0.089 0.911 12 C -0.183 4.183 13 C 0.013 3.987 14 H 0.112 0.888 15 N -0.348 5.348 16 C 0.330 3.670 17 O -0.465 6.465 18 C -0.162 4.162 19 C -0.172 4.172 20 C -0.132 4.132 21 H 0.116 0.884 22 C -0.119 4.119 23 C -0.157 4.157 24 C -0.149 4.149 25 C -0.108 4.108 26 C -0.220 4.220 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.242 0.758 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.998 -8.823 -4.340 12.675 hybrid contribution 0.507 1.451 0.209 1.551 sum -7.491 -7.372 -4.131 11.293 Atomic orbital electron populations 1.69750 1.05964 1.25912 1.58774 1.25408 0.96463 1.00408 1.03448 0.85187 0.78234 0.80464 0.76490 1.19594 1.22439 1.22007 1.19626 0.91484 0.85041 1.41747 0.90796 1.42339 1.05156 1.00494 1.87572 1.21528 0.95748 0.85054 0.94044 0.91076 1.23760 1.00208 0.99668 0.94667 1.21883 0.83766 0.95683 0.97413 0.88787 1.45933 1.22199 1.28801 1.37900 1.20194 0.84384 0.84024 0.78428 1.90587 1.76599 1.27352 1.52003 1.21085 0.90673 0.95511 1.08958 1.23297 0.94476 1.01333 0.98079 1.22323 0.99372 1.00742 0.90799 0.88353 1.21125 0.98579 0.93189 0.99049 1.21579 1.01022 0.96833 0.96232 1.21545 0.97589 0.99552 0.96245 1.20629 0.99215 0.89882 1.01104 1.24260 0.98051 1.00079 0.99633 0.93934 0.79246 0.91627 0.85388 0.75812 0.88696 0.85429 0.89110 0.90366 0.89683 0.93745 0.91876 0.89858 0.94259 0.92006 0.87551 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.19 13.06 21.65 0.28 -53.91 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.97 44.84 29.55 68.60 2.03 46.87 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.25 -13.22 9.97 84.03 0.84 -12.38 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.72 -34.22 5.19 -320.01 -1.66 -35.88 16 10 C 0.15 5.59 4.57 45.61 0.21 5.80 16 11 H 0.07 2.63 8.10 -2.39 -0.02 2.61 16 12 C -0.14 -4.41 7.58 31.12 0.24 -4.18 16 13 C 0.12 4.02 4.30 45.52 0.20 4.22 16 14 H 0.09 3.14 7.50 -2.39 -0.02 3.12 16 15 N -0.70 -25.72 5.01 -440.04 -2.21 -27.93 16 16 C 0.54 20.13 7.26 87.66 0.64 20.77 16 17 O -0.58 -24.37 15.62 -2.99 -0.05 -24.42 16 18 C -0.16 -4.90 2.49 -53.77 -0.13 -5.04 16 19 C -0.13 -3.23 9.29 30.58 0.28 -2.95 16 20 C -0.11 -2.95 5.63 -10.96 -0.06 -3.01 16 21 H 0.10 2.87 7.44 -2.38 -0.02 2.85 16 22 C -0.08 -1.63 5.85 30.47 0.18 -1.46 16 23 C -0.12 -2.67 5.92 30.65 0.18 -2.48 16 24 C -0.11 -2.84 5.71 30.65 0.17 -2.67 16 25 C -0.07 -2.29 4.75 30.25 0.14 -2.15 16 26 C -0.18 -6.39 7.70 31.21 0.24 -6.15 16 27 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 28 H 0.37 18.46 5.35 -92.71 -0.50 17.97 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.40 15.78 5.17 -92.71 -0.48 15.30 16 32 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.13 2.44 7.26 -2.39 -0.02 2.42 16 34 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.17 8.05 -2.39 -0.02 1.15 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.08 1.76 7.11 -2.39 -0.02 1.74 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 2.18 7.81 -2.39 -0.02 2.16 16 42 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -63.64 337.52 2.02 -61.62 By element: Atomic # 1 Polarization: 48.32 SS G_CDS: 0.03 Total: 48.35 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 3.59 Total: -14.71 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -3.58 Total: -117.71 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.64 2.02 -61.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022681945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.574 kcal (2) G-P(sol) polarization free energy of solvation -63.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds