Wall clock time and date at job start Tue Mar 31 2020 00:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00117 * 2 1 4 4 H 1.48500 * 109.46883 * 269.99888 * 3 2 1 5 5 H 1.48504 * 109.47018 * 29.99288 * 3 2 1 6 6 H 1.48498 * 109.47565 * 149.99371 * 3 2 1 7 7 C 1.38818 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99436 * 0.02562 * 7 2 1 9 9 N 1.36929 * 120.00081 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99978 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84453 * 336.19983 * 10 9 7 12 12 C 1.53955 * 113.74058 * 107.40263 * 10 9 7 13 13 C 1.53778 * 87.01960 * 139.94718 * 12 10 9 14 14 H 1.08997 * 113.61619 * 89.22409 * 13 12 10 15 15 N 1.46495 * 113.61719 * 220.04964 * 13 12 10 16 16 C 1.34780 * 120.00037 * 254.13887 * 15 13 12 17 17 O 1.21281 * 119.99922 * 359.97438 * 16 15 13 18 18 C 1.50700 * 120.00129 * 179.97438 * 16 15 13 19 19 C 1.51850 * 108.54417 * 57.95477 * 18 16 15 20 20 C 1.53078 * 110.74650 * 187.53185 * 19 18 16 21 21 C 1.51369 * 108.59417 * 274.25535 * 20 19 18 22 22 C 1.29529 * 120.36107 * 71.91818 * 21 20 19 23 23 C 1.51374 * 120.35911 * 359.97438 * 22 21 20 24 24 C 1.51845 * 108.64732 * 181.97696 * 18 16 15 25 25 C 1.53776 * 113.61630 * 204.99834 * 10 9 7 26 26 H 0.96998 * 120.00035 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00576 * 0.02562 * 9 7 2 28 28 H 1.08994 * 113.61542 * 25.42591 * 12 10 9 29 29 H 1.09003 * 113.66353 * 254.47477 * 12 10 9 30 30 H 0.97004 * 120.00127 * 74.12784 * 15 13 12 31 31 H 1.09002 * 108.60404 * 299.99522 * 18 16 15 32 32 H 1.09000 * 109.21815 * 307.85251 * 19 18 16 33 33 H 1.09000 * 109.22208 * 67.19741 * 19 18 16 34 34 H 1.08998 * 109.62551 * 154.51943 * 20 19 18 35 35 H 1.09005 * 109.62083 * 33.98392 * 20 19 18 36 36 H 1.08000 * 119.82233 * 251.89614 * 21 20 19 37 37 H 1.08003 * 119.81948 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.60952 * 168.35954 * 23 22 21 39 39 H 1.09000 * 109.75854 * 47.93101 * 23 22 21 40 40 H 1.08991 * 109.22582 * 292.86040 * 24 18 16 41 41 H 1.09004 * 109.22537 * 52.25268 * 24 18 16 42 42 H 1.09007 * 113.61010 * 105.38895 * 25 10 9 43 43 H 1.09000 * 113.69066 * 334.49868 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4708 0.0011 11 1 3.5278 -3.2970 0.4060 12 6 4.7877 -2.7965 -1.3435 13 6 5.9845 -3.3108 -0.5262 14 1 5.9133 -4.3666 -0.2647 15 7 7.2841 -2.9532 -1.0998 16 6 8.0277 -3.8905 -1.7205 17 8 7.6210 -5.0300 -1.8036 18 6 9.3644 -3.5225 -2.3111 19 6 10.2398 -2.9543 -1.2081 20 6 11.5416 -2.3918 -1.7845 21 6 12.5446 -3.5194 -1.9015 22 6 12.3983 -4.4346 -2.8064 23 6 11.2220 -4.3884 -3.7580 24 6 9.9526 -4.7502 -2.9837 25 6 5.5259 -2.3659 0.5971 26 1 -0.4850 0.8400 -0.0004 27 1 3.8647 -0.3620 0.0014 28 1 5.0149 -1.9150 -1.9429 29 1 4.2793 -3.5759 -1.9111 30 1 7.6095 -2.0418 -1.0332 31 1 9.2106 -2.7514 -3.0661 32 1 9.7002 -2.1575 -0.6963 33 1 10.4749 -3.7436 -0.4941 34 1 11.9331 -1.6212 -1.1205 35 1 11.3520 -1.9671 -2.7704 36 1 13.3871 -3.5609 -1.2271 37 1 13.1190 -5.2354 -2.8818 38 1 11.3756 -5.1054 -4.5645 39 1 11.1236 -3.3857 -4.1739 40 1 10.1950 -5.4938 -2.2246 41 1 9.2191 -5.1677 -3.6735 42 1 5.6127 -2.7982 1.5940 43 1 5.9564 -1.3667 0.5301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023100485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:32 Heat of formation + Delta-G solvation = -2.618236 kcal Electronic energy + Delta-G solvation = -21469.348990 eV Core-core repulsion = 18322.024297 eV Total energy + Delta-G solvation = -3147.324693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45774 -38.77245 -37.58807 -34.25708 -33.25564 -32.42543 -31.97969 -30.42660 -26.44406 -25.25362 -24.54425 -24.14551 -22.36600 -21.10225 -20.16051 -19.43570 -18.33096 -17.60591 -17.16460 -16.60141 -16.17901 -15.20437 -14.82036 -14.64748 -14.42769 -14.06081 -13.71021 -13.45173 -13.26901 -13.07536 -12.72281 -12.45196 -12.19842 -12.06638 -11.98905 -11.78071 -11.57353 -11.08729 -11.02492 -10.93394 -10.78662 -10.62506 -10.45584 -10.31047 -10.16415 -9.71816 -9.60059 -9.27872 -8.96200 -8.80450 -7.31028 -5.81182 -3.17307 1.99381 2.64891 3.22092 3.32874 3.35271 3.41592 4.28301 4.46597 4.50139 4.54337 4.72461 4.80068 4.85692 4.91749 5.08583 5.11219 5.15986 5.21919 5.23856 5.35454 5.39552 5.43870 5.52703 5.60390 5.65648 5.74523 5.78539 5.87187 5.93308 6.02362 6.08805 6.10856 6.17629 6.36254 6.38625 6.52379 6.60599 6.63827 6.93268 7.57459 7.95047 8.26830 8.38326 9.15504 9.87780 10.07257 11.37000 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.003149 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.676165 B = 8889.563798 C = 9316.611043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.088 0.912 12 C -0.176 4.176 13 C 0.118 3.882 14 H 0.110 0.890 15 N -0.716 5.716 16 C 0.512 3.488 17 O -0.543 6.543 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.090 4.090 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.093 4.093 24 C -0.094 4.094 25 C -0.161 4.161 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.390 -5.595 -4.344 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.063 3.937 11 H 0.106 0.894 12 C -0.218 4.218 13 C 0.013 3.987 14 H 0.128 0.872 15 N -0.366 5.366 16 C 0.298 3.702 17 O -0.420 6.420 18 C -0.126 4.126 19 C -0.144 4.144 20 C -0.128 4.128 21 C -0.179 4.179 22 C -0.173 4.173 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.201 4.201 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.232 0.768 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 25.779 -6.463 -4.373 26.934 hybrid contribution 0.770 1.719 0.017 1.883 sum 26.549 -4.745 -4.356 27.319 Atomic orbital electron populations 1.69702 1.05122 1.25895 1.57213 1.24705 0.95265 0.97264 1.01882 0.86542 0.79178 0.84985 0.77749 1.21074 1.21672 1.20357 1.19148 0.80599 0.94860 1.43268 0.89027 1.42699 1.04108 1.01803 1.88790 1.21364 0.89285 0.90289 0.92778 0.89418 1.24318 0.96345 1.00882 1.00289 1.22457 0.81088 0.99878 0.95240 0.87215 1.46092 1.20296 1.12490 1.57690 1.20741 0.86135 0.85368 0.77941 1.90686 1.72820 1.20248 1.58249 1.21044 0.92723 1.00087 0.98706 1.21299 0.95218 1.00774 0.97092 1.20820 0.93809 0.96462 1.01674 1.22540 0.99371 0.96938 0.99088 1.22587 0.98403 0.98868 0.97439 1.20854 0.92945 1.02153 0.97084 1.21083 0.96100 0.96245 0.99795 1.23873 0.99263 0.99101 0.97900 0.92988 0.80497 0.90375 0.91801 0.76789 0.88926 0.91171 0.91108 0.91095 0.90795 0.87590 0.87585 0.91201 0.90983 0.91139 0.90689 0.91176 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.10 13.97 55.49 0.78 -28.32 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.69 27.74 -169.99 -4.71 16.98 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.25 -6.94 10.45 -15.06 -0.16 -7.09 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 9 N -0.73 -16.92 5.21 -52.55 -0.27 -17.20 16 10 C 0.17 3.24 4.48 -67.03 -0.30 2.94 16 11 H 0.09 1.67 8.10 -51.93 -0.42 1.24 16 12 C -0.18 -2.94 7.70 -25.83 -0.20 -3.14 16 13 C 0.12 1.68 4.21 -67.12 -0.28 1.39 16 14 H 0.11 1.67 7.50 -51.93 -0.39 1.28 16 15 N -0.72 -8.50 5.16 -53.02 -0.27 -8.78 16 16 C 0.51 6.52 7.11 -10.98 -0.08 6.44 16 17 O -0.54 -9.09 15.41 5.56 0.09 -9.00 16 18 C -0.10 -0.95 2.05 -92.94 -0.19 -1.14 16 19 C -0.11 -0.81 4.87 -27.28 -0.13 -0.94 16 20 C -0.09 -0.59 5.62 -27.51 -0.15 -0.74 16 21 C -0.16 -1.13 9.34 -35.29 -0.33 -1.46 16 22 C -0.15 -1.13 9.34 -35.29 -0.33 -1.46 16 23 C -0.09 -0.69 5.61 -27.53 -0.15 -0.84 16 24 C -0.09 -0.89 4.28 -27.30 -0.12 -1.01 16 25 C -0.16 -2.35 7.58 -25.92 -0.20 -2.54 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.36 8.10 5.79 -40.82 -0.24 7.87 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.40 3.76 7.84 -40.82 -0.32 3.44 16 31 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 32 H 0.07 0.47 7.10 -51.93 -0.37 0.10 16 33 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.46 6.69 -51.93 -0.35 0.11 16 36 H 0.11 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.11 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.49 6.70 -51.93 -0.35 0.14 16 40 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 41 H 0.07 0.80 7.81 -51.93 -0.41 0.39 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.10 8.09 -51.93 -0.42 0.67 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -32.57 338.77 -9.05 -41.62 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.03 Total: 9.14 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.72 Total: -9.55 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.23 Total: -54.29 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.57 -9.05 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023100485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.998 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds