Wall clock time and date at job start Tue Mar 31 2020 00:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00117 * 2 1 4 4 H 1.48500 * 109.46883 * 269.99888 * 3 2 1 5 5 H 1.48504 * 109.47018 * 29.99288 * 3 2 1 6 6 H 1.48498 * 109.47565 * 149.99371 * 3 2 1 7 7 C 1.38818 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99436 * 0.02562 * 7 2 1 9 9 N 1.36929 * 120.00081 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99978 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84453 * 336.19983 * 10 9 7 12 12 C 1.53955 * 113.74058 * 107.40263 * 10 9 7 13 13 C 1.53778 * 87.01960 * 139.94718 * 12 10 9 14 14 H 1.08997 * 113.61619 * 89.22409 * 13 12 10 15 15 N 1.46495 * 113.61719 * 220.04964 * 13 12 10 16 16 C 1.34780 * 120.00037 * 254.13887 * 15 13 12 17 17 O 1.21281 * 119.99922 * 359.97438 * 16 15 13 18 18 C 1.50700 * 120.00129 * 179.97438 * 16 15 13 19 19 C 1.51850 * 108.54417 * 57.95477 * 18 16 15 20 20 C 1.53078 * 110.74650 * 187.53185 * 19 18 16 21 21 C 1.51369 * 108.59417 * 274.25535 * 20 19 18 22 22 C 1.29529 * 120.36107 * 71.91818 * 21 20 19 23 23 C 1.51374 * 120.35911 * 359.97438 * 22 21 20 24 24 C 1.51845 * 108.64732 * 181.97696 * 18 16 15 25 25 C 1.53776 * 113.61630 * 204.99834 * 10 9 7 26 26 H 0.96998 * 120.00035 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00576 * 0.02562 * 9 7 2 28 28 H 1.08994 * 113.61542 * 25.42591 * 12 10 9 29 29 H 1.09003 * 113.66353 * 254.47477 * 12 10 9 30 30 H 0.97004 * 120.00127 * 74.12784 * 15 13 12 31 31 H 1.09002 * 108.60404 * 299.99522 * 18 16 15 32 32 H 1.09000 * 109.21815 * 307.85251 * 19 18 16 33 33 H 1.09000 * 109.22208 * 67.19741 * 19 18 16 34 34 H 1.08998 * 109.62551 * 154.51943 * 20 19 18 35 35 H 1.09005 * 109.62083 * 33.98392 * 20 19 18 36 36 H 1.08000 * 119.82233 * 251.89614 * 21 20 19 37 37 H 1.08003 * 119.81948 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.60952 * 168.35954 * 23 22 21 39 39 H 1.09000 * 109.75854 * 47.93101 * 23 22 21 40 40 H 1.08991 * 109.22582 * 292.86040 * 24 18 16 41 41 H 1.09004 * 109.22537 * 52.25268 * 24 18 16 42 42 H 1.09007 * 113.61010 * 105.38895 * 25 10 9 43 43 H 1.09000 * 113.69066 * 334.49868 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4708 0.0011 11 1 3.5278 -3.2970 0.4060 12 6 4.7877 -2.7965 -1.3435 13 6 5.9845 -3.3108 -0.5262 14 1 5.9133 -4.3666 -0.2647 15 7 7.2841 -2.9532 -1.0998 16 6 8.0277 -3.8905 -1.7205 17 8 7.6210 -5.0300 -1.8036 18 6 9.3644 -3.5225 -2.3111 19 6 10.2398 -2.9543 -1.2081 20 6 11.5416 -2.3918 -1.7845 21 6 12.5446 -3.5194 -1.9015 22 6 12.3983 -4.4346 -2.8064 23 6 11.2220 -4.3884 -3.7580 24 6 9.9526 -4.7502 -2.9837 25 6 5.5259 -2.3659 0.5971 26 1 -0.4850 0.8400 -0.0004 27 1 3.8647 -0.3620 0.0014 28 1 5.0149 -1.9150 -1.9429 29 1 4.2793 -3.5759 -1.9111 30 1 7.6095 -2.0418 -1.0332 31 1 9.2106 -2.7514 -3.0661 32 1 9.7002 -2.1575 -0.6963 33 1 10.4749 -3.7436 -0.4941 34 1 11.9331 -1.6212 -1.1205 35 1 11.3520 -1.9671 -2.7704 36 1 13.3871 -3.5609 -1.2271 37 1 13.1190 -5.2354 -2.8818 38 1 11.3756 -5.1054 -4.5645 39 1 11.1236 -3.3857 -4.1739 40 1 10.1950 -5.4938 -2.2246 41 1 9.2191 -5.1677 -3.6735 42 1 5.6127 -2.7982 1.5940 43 1 5.9564 -1.3667 0.5301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023100485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:31 Heat of formation + Delta-G solvation = -23.785929 kcal Electronic energy + Delta-G solvation = -21470.266890 eV Core-core repulsion = 18322.024297 eV Total energy + Delta-G solvation = -3148.242593 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44980 -39.87947 -38.54683 -35.87813 -34.49141 -33.44912 -32.71681 -32.22306 -27.28792 -26.56584 -26.06439 -24.85581 -23.73653 -22.18606 -21.28599 -20.70016 -19.46039 -18.86641 -18.15897 -17.66988 -17.07953 -16.44514 -16.26772 -15.75782 -15.51298 -15.32466 -14.72122 -14.68455 -14.40659 -13.99475 -13.85388 -13.61660 -13.56888 -13.32855 -13.12765 -12.87959 -12.63272 -12.33736 -12.13554 -12.02509 -11.89776 -11.79553 -11.74604 -11.66615 -11.48484 -11.20240 -10.92083 -10.70192 -10.00358 -9.84741 -9.28485 -8.02278 -5.36484 1.38262 1.43486 1.46342 1.50784 1.65150 2.22991 2.49460 3.27271 3.60185 3.61747 3.68496 3.76990 3.82767 3.88694 4.09620 4.14729 4.23238 4.25190 4.30156 4.47778 4.53913 4.63780 4.68662 4.77279 4.84031 4.88329 4.91690 4.95525 5.08058 5.11865 5.13804 5.19742 5.24853 5.32708 5.34560 5.43636 5.65373 5.77232 5.84694 6.09204 6.22230 6.61284 7.07626 7.29531 7.83022 8.03788 9.19344 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.003149 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.676165 B = 8889.563798 C = 9316.611043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.237 4.237 8 H 0.053 0.947 9 N -0.737 5.737 10 C 0.152 3.848 11 H 0.073 0.927 12 C -0.172 4.172 13 C 0.134 3.866 14 H 0.099 0.901 15 N -0.704 5.704 16 C 0.509 3.491 17 O -0.588 6.588 18 C -0.095 4.095 19 C -0.102 4.102 20 C -0.088 4.088 21 C -0.164 4.164 22 C -0.167 4.167 23 C -0.088 4.088 24 C -0.092 4.092 25 C -0.137 4.137 26 H 0.258 0.742 27 H 0.369 0.631 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.414 0.586 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.868 -3.733 -4.274 30.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.368 4.368 8 H 0.071 0.929 9 N -0.378 5.378 10 C 0.042 3.958 11 H 0.091 0.909 12 C -0.214 4.214 13 C 0.028 3.972 14 H 0.117 0.883 15 N -0.355 5.355 16 C 0.297 3.703 17 O -0.468 6.468 18 C -0.117 4.117 19 C -0.139 4.139 20 C -0.125 4.125 21 C -0.182 4.182 22 C -0.185 4.185 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.177 4.177 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.252 0.748 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 29.342 -4.613 -4.300 30.012 hybrid contribution -0.340 0.976 -0.024 1.034 sum 29.003 -3.638 -4.325 29.548 Atomic orbital electron populations 1.69905 1.07372 1.26780 1.59591 1.25609 0.96190 1.01640 1.02508 0.85331 0.78836 0.79029 0.78089 1.20475 1.22477 1.16811 1.19098 0.82883 0.93423 1.41426 0.92869 1.42617 1.02301 1.03689 1.89199 1.21655 0.90969 0.88286 0.94886 0.90886 1.24201 0.97263 1.00653 0.99245 1.22070 0.81472 0.99307 0.94340 0.88275 1.45934 1.19146 1.13348 1.57071 1.21430 0.87100 0.84649 0.77127 1.90675 1.73997 1.22250 1.59896 1.21077 0.90689 1.00392 0.99493 1.21288 0.95688 1.00746 0.96220 1.20837 0.92843 0.96458 1.02393 1.22740 0.99696 0.96929 0.98814 1.22677 0.98602 0.99402 0.97815 1.20806 0.91828 1.02877 0.96978 1.21032 0.96731 0.96069 0.99174 1.23678 0.95292 1.00262 0.98436 0.93347 0.79675 0.90034 0.93330 0.74824 0.86837 0.89636 0.92394 0.89677 0.90009 0.86851 0.87177 0.90748 0.89889 0.92933 0.92473 0.89684 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.36 13.97 21.65 0.30 -63.06 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.96 44.22 27.74 68.60 1.90 46.13 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.24 -9.77 6.52 99.48 0.65 -9.12 16 7 C -0.24 -13.44 10.45 84.04 0.88 -12.56 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 9 N -0.74 -33.08 5.21 -320.16 -1.67 -34.75 16 10 C 0.15 5.50 4.48 45.57 0.20 5.71 16 11 H 0.07 2.83 8.10 -2.39 -0.02 2.81 16 12 C -0.17 -5.55 7.70 31.18 0.24 -5.32 16 13 C 0.13 3.55 4.21 45.52 0.19 3.74 16 14 H 0.10 2.93 7.50 -2.39 -0.02 2.91 16 15 N -0.70 -14.78 5.16 -440.05 -2.27 -17.05 16 16 C 0.51 12.12 7.11 87.66 0.62 12.74 16 17 O -0.59 -19.57 15.41 -3.03 -0.05 -19.62 16 18 C -0.10 -1.52 2.05 -12.30 -0.03 -1.55 16 19 C -0.10 -1.23 4.87 30.24 0.15 -1.08 16 20 C -0.09 -0.84 5.62 30.09 0.17 -0.67 16 21 C -0.16 -1.88 9.34 27.37 0.26 -1.63 16 22 C -0.17 -2.11 9.34 27.37 0.26 -1.86 16 23 C -0.09 -1.13 5.61 30.07 0.17 -0.97 16 24 C -0.09 -1.65 4.28 30.23 0.13 -1.52 16 25 C -0.14 -3.57 7.58 31.12 0.24 -3.33 16 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.37 15.42 5.79 -92.71 -0.54 14.88 16 28 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.41 6.09 7.84 -92.71 -0.73 5.36 16 31 H 0.11 1.39 7.90 -2.39 -0.02 1.37 16 32 H 0.09 0.79 7.10 -2.39 -0.02 0.77 16 33 H 0.06 0.88 7.86 -2.39 -0.02 0.86 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.68 6.69 -2.38 -0.02 0.67 16 36 H 0.11 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.11 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 0.89 6.70 -2.39 -0.02 0.88 16 40 H 0.05 1.11 7.85 -2.39 -0.02 1.09 16 41 H 0.06 1.21 7.81 -2.39 -0.02 1.19 16 42 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.10 2.26 8.09 -2.39 -0.02 2.24 16 Total: -1.00 -72.89 338.77 1.84 -71.05 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.32 Total: 29.13 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 3.94 Total: -11.83 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -3.64 Total: -114.86 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.13 kcal Total: -72.89 1.84 -71.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023100485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.262 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds