Wall clock time and date at job start Mon Mar 30 2020 23:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48496 * 109.47404 * 270.00561 * 3 2 1 5 5 H 1.48509 * 109.46800 * 30.00342 * 3 2 1 6 6 H 1.48502 * 109.47190 * 150.00243 * 3 2 1 7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00222 * 197.35577 * 7 2 1 9 9 N 1.36944 * 119.99723 * 17.35018 * 7 2 1 10 10 C 1.46926 * 120.63025 * 27.68147 * 9 7 2 11 11 C 1.53196 * 108.77330 * 126.41169 * 10 9 7 12 12 C 1.53036 * 109.31153 * 54.63535 * 11 10 9 13 13 C 1.53040 * 109.52564 * 298.63618 * 12 11 10 14 14 H 1.08996 * 109.49977 * 301.40595 * 13 12 11 15 15 C 1.53006 * 109.49618 * 181.31217 * 13 12 11 16 16 N 1.46497 * 109.47016 * 174.99865 * 15 13 12 17 17 C 1.34779 * 119.99775 * 179.97438 * 16 15 13 18 18 O 1.21618 * 119.99908 * 0.02562 * 17 16 15 19 19 C 1.47094 * 119.99926 * 180.02562 * 17 16 15 20 20 C 1.32619 * 124.62167 * 180.02562 * 19 17 16 21 21 C 1.51116 * 110.75879 * 179.97438 * 20 19 17 22 22 C 1.54579 * 104.83950 * 16.60080 * 21 20 19 23 23 C 1.51114 * 124.62045 * 359.72657 * 19 17 16 24 24 C 1.46928 * 120.63130 * 207.70078 * 9 7 2 25 25 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.58637 * 6.62167 * 10 9 7 27 27 H 1.09002 * 109.69767 * 246.26726 * 10 9 7 28 28 H 1.08999 * 109.49381 * 294.67945 * 11 10 9 29 29 H 1.08997 * 109.48976 * 174.58485 * 11 10 9 30 30 H 1.08997 * 109.46301 * 58.65646 * 12 11 10 31 31 H 1.09003 * 109.45735 * 178.62479 * 12 11 10 32 32 H 1.09000 * 109.47034 * 295.00342 * 15 13 12 33 33 H 1.09002 * 109.46784 * 55.00347 * 15 13 12 34 34 H 0.96994 * 120.00052 * 0.02562 * 16 15 13 35 35 H 1.07994 * 124.62063 * 0.02562 * 20 19 17 36 36 H 1.09000 * 110.36005 * 135.43908 * 21 20 19 37 37 H 1.08994 * 110.36474 * 257.64761 * 21 20 19 38 38 H 1.09003 * 110.98060 * 93.06890 * 22 21 20 39 39 H 1.09001 * 110.98352 * 216.87045 * 22 21 20 40 40 H 1.09000 * 110.36622 * 282.23885 * 23 19 17 41 41 H 1.08996 * 110.36748 * 44.55641 * 23 19 17 42 42 H 1.09002 * 109.58312 * 353.37150 * 24 9 7 43 43 H 1.08993 * 109.58721 * 113.65366 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0535 -1.2234 0.2785 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2756 11 6 0.5006 -3.3037 -2.4297 12 6 0.8185 -4.6890 -1.8624 13 6 2.0742 -4.6092 -0.9912 14 1 2.9080 -4.2391 -1.5877 15 6 2.4101 -6.0007 -0.4508 16 7 3.6765 -5.9466 0.2837 17 6 4.1738 -7.0628 0.8524 18 8 3.5715 -8.1149 0.7553 19 6 5.4451 -7.0085 1.5904 20 6 6.0170 -8.0476 2.1836 21 6 7.3116 -7.6395 2.8477 22 6 7.2430 -6.0977 2.9350 23 6 6.2806 -5.7623 1.7705 24 6 1.8192 -3.6547 0.1792 25 1 -0.4850 0.8400 0.0004 26 1 0.0985 -1.3255 -1.6684 27 1 -0.6757 -2.6391 -0.7477 28 1 1.3492 -2.9457 -3.0127 29 1 -0.3802 -3.3656 -3.0687 30 1 -0.0206 -5.0357 -1.2592 31 1 0.9891 -5.3868 -2.6822 32 1 1.6159 -6.3321 0.2181 33 1 2.5015 -6.7006 -1.2814 34 1 4.1567 -5.1074 0.3614 35 1 5.6130 -9.0491 2.1903 36 1 7.3791 -8.0733 3.8454 37 1 8.1629 -7.9494 2.2417 38 1 6.8297 -5.7790 3.8919 39 1 8.2241 -5.6533 2.7676 40 1 6.8423 -5.5475 0.8614 41 1 5.6471 -4.9157 2.0348 42 1 2.7401 -3.5176 0.7461 43 1 1.0480 -4.0678 0.8292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023308005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:36 Heat of formation + Delta-G solvation = -19.153556 kcal Electronic energy + Delta-G solvation = -21840.991627 eV Core-core repulsion = 18692.949909 eV Total energy + Delta-G solvation = -3148.041719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98652 -38.18570 -37.45492 -34.79876 -33.00309 -30.65737 -30.44290 -29.39025 -28.49164 -25.49117 -25.22216 -22.39823 -21.88051 -21.14747 -20.61340 -19.31092 -18.50720 -17.24558 -16.63535 -15.99499 -15.61033 -15.10596 -14.86097 -14.40175 -14.11357 -13.66125 -13.43796 -13.00893 -12.89272 -12.79258 -12.39948 -12.24372 -12.17860 -12.10262 -11.83915 -11.44205 -11.35888 -11.28814 -11.02578 -10.73829 -10.49861 -10.23379 -10.18720 -9.97686 -9.86338 -9.55485 -9.43197 -9.15045 -8.82901 -8.48138 -6.69757 -5.80761 -3.23603 1.31423 3.33764 3.35627 3.36813 3.42458 3.43635 4.32610 4.39133 4.46371 4.78081 4.89959 5.07502 5.11961 5.29390 5.41537 5.43589 5.46374 5.47592 5.58320 5.60883 5.63205 5.74996 5.83238 5.94219 5.96860 5.99950 6.18165 6.24092 6.32854 6.37183 6.39955 6.54063 6.58759 6.70138 6.77322 6.85418 6.95967 7.38817 7.64798 7.66730 7.76693 8.32491 8.42442 9.18866 9.82447 10.39295 11.27480 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.004352 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.746258 B = 6431.733611 C = 7796.084562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.117 4.117 14 H 0.073 0.927 15 C 0.127 3.873 16 N -0.717 5.717 17 C 0.562 3.438 18 O -0.551 6.551 19 C -0.189 4.189 20 C -0.081 4.081 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.095 4.095 24 C 0.154 3.846 25 H 0.254 0.746 26 H 0.086 0.914 27 H 0.017 0.983 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.403 0.597 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.572 -12.099 1.607 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.368 5.368 17 C 0.350 3.650 18 O -0.431 6.431 19 C -0.192 4.192 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.160 4.160 23 C -0.132 4.132 24 C 0.027 3.973 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.239 0.761 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.007 -12.648 1.547 16.838 hybrid contribution 0.530 1.266 -0.018 1.372 sum 11.537 -11.382 1.528 16.279 Atomic orbital electron populations 1.70039 1.05277 1.25514 1.53725 1.25029 0.95262 0.98394 1.00868 0.86302 0.79098 0.83728 0.77693 1.21443 1.21765 1.20452 1.19175 0.92654 0.84897 1.41661 0.91711 1.44047 1.35857 1.01174 1.50309 1.20798 0.88515 0.98425 0.87956 1.22171 1.00094 0.95941 0.99875 1.21341 0.96726 0.97742 0.97967 1.21946 0.98851 0.93574 0.99432 0.90875 1.21478 0.84780 0.97990 0.95484 1.45989 1.24708 1.11497 1.54561 1.17987 0.84619 0.83703 0.78719 1.90770 1.61112 1.30043 1.61140 1.21903 0.96224 0.97831 1.03210 1.24013 0.94375 0.98549 0.93119 1.21473 0.95759 0.96242 1.00846 1.22455 0.99751 0.95033 0.98786 1.21315 0.96833 0.95831 0.99195 1.20888 0.97458 0.86847 0.92100 0.93611 0.89538 0.96461 0.92760 0.93173 0.92459 0.93428 0.91537 0.91951 0.76122 0.84588 0.90356 0.89803 0.90680 0.90540 0.90138 0.90386 0.93221 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 11.19 55.49 0.62 -25.30 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -14.47 2.99 -172.34 -0.52 -14.99 16 10 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 12 C -0.10 -1.65 5.17 -26.69 -0.14 -1.78 16 13 C -0.12 -1.94 2.37 -90.51 -0.21 -2.16 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 15 C 0.13 1.91 5.07 -4.04 -0.02 1.89 16 16 N -0.72 -10.13 5.32 -61.49 -0.33 -10.46 16 17 C 0.56 8.45 7.79 -12.67 -0.10 8.35 16 18 O -0.55 -10.12 16.77 5.26 0.09 -10.03 16 19 C -0.19 -2.25 6.09 -102.73 -0.63 -2.88 16 20 C -0.08 -0.84 10.43 -36.00 -0.38 -1.22 16 21 C -0.11 -0.80 6.80 -26.85 -0.18 -0.99 16 22 C -0.12 -0.95 7.17 -24.98 -0.18 -1.13 16 23 C -0.09 -0.90 6.04 -26.76 -0.16 -1.06 16 24 C 0.15 3.10 5.60 -3.73 -0.02 3.08 16 25 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 5.16 6.70 -40.82 -0.27 4.88 16 35 H 0.14 1.42 8.03 -52.49 -0.42 1.00 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.76 7.82 -51.93 -0.41 0.35 16 42 H 0.05 0.96 7.14 -51.93 -0.37 0.59 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -31.07 341.51 -9.70 -40.77 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.25 Total: 2.29 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.43 Total: -3.72 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.22 Total: -50.75 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.07 -9.70 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023308005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.619 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds